pycom05g20230

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
23054675 .. 23055385
711 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g20230.1

Sequence Viewer

Length: 555 bp
ATGTGCTTGCTTCTCTCCTACTCTTCTTTGCTGCTCATCGTCGCAGCAGTATTCTCCATAGTTGATAGAACCAAAGGTTGGGTTCTTTACCAAACAGCCCAAATTGATAACTGTGAGAACTATGCATTCTGTGGTGTATATGGTGCATTTAGCATTGAAAAGTGCCCGGCTTGTAGCTGTTTGAAAGGATTTACACCAAAGTTTCCGAAAGAATGGGATTTGGTAGATTGGTCTAATGGTTGTGTGAGAAAGACTTCTCTAAATTGCACCGGAGACGTGTTCCAGAAGTACTCAGCGTTGAATTTGCCTACCACAGAACAATCCTGGTTTAATAGAAGTATGAACCTCAAGGAATGTGAGATGGTGTGCATGAAGAACTGCTCTTGCACGGCTTATACAAATTTGGATATCCGGGATGGAGGAACTGGGTGCTTGCTGTGGTACGATACATACTATTTGTTTATGGGAGATTATGTGGACCGTGGCTATTATTCAGTTGAAACAGTGACAGTAAGTATGAGTATTTTTATTTCTACTTATCTTTCAATTAGTTAA

Protein Analysis

185

Amino Acids

20.85

Weight (kDa)

4.92

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 19 - 68 2.2e-10 S-locus glycoprotein domain
PAN_2 PF08276 89 - 148 4.1e-17 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27290 AT4G27290
fragaria_vesca FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g21310 FvH4_3g21310
malus_domestica MD05G1219900.v1.1 MD05G1220200.v1.1 MD05G1230800.v1.1 MD05G1231100.v1.1 MD05G1231700.v1.1 MD05G1232100.v1.1 MD05G1232400.v1.1 MD05G1233000.v1.1 MD10G1202800.v1.1
prunus_persica Prupe.4G139500_v2.0.a1 Prupe.4G139500_v2.0.a1
pyrus_communis pycom05g20170 pycom05g20200 pycom05g20230 pycom05g20250 pycom05g20260 pycom05g20280 pycom05g20320 pycom05g20370 pycom05g20380 pycom05g24850 pycom10g17340
rosa_chinensis RchiOBHm_Chr5g0026351 RchiOBHm_Chr5g0026371 RchiOBHm_Chr5g0026381 RchiOBHm_Chr5g0026411 RchiOBHm_Chr5g0026551 RchiOBHm_Chr5g0036371
rosa_laevigata RLG00000032923 RLG00000032926 RLG00000032927 RLG00000032928 RLG00000032934 RLG00000033692
rosa_multiflora Rmu_co8389779.1_g000001 Rmu_sc0000712.1_g000012 Rmu_sc0001017.1_g000026 Rmu_sc0001114.1_g000001 Rmu_sc0001114.1_g000002 Rmu_sc0001114.1_g000008 Rmu_sc0005581.1_g000006 Rmu_sc0005581.1_g000007 Rmu_sc0006059.1_g000052 Rmu_sc0042966.1_g000001
rosa_roxburghii Rroxscaffold_1G00044440 Rroxscaffold_1G00052930 Rroxscaffold_1G00052980 Rroxscaffold_1G00052990 Rroxscaffold_1G00053000
rosa_rugosa Rorug05G0092500 Rorug05G0092500 Rorug05G0092500 Rorug05G0092600 Rorug05G0092700 Rorug05G0092700 Rorug05G0093700 Rorug05G0155200 Rorug05G0155800 Rorug05G0155800
rosa_samantha Rh5AG185700 Rh5AG186300 Rh5BG182600 Rh5BG182900 Rh5BG183600 Rh5BG249400 Rh5CG202000 Rh5CG202100 Rh5CG202200 Rh5CG203400 Rh5CG281200 Rh5DG184400 Rh5DG184500 Rh5DG185900
rosa_wichuraiana Rw5G016850 Rw5G016870 Rw5G016930 Rw5G022870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 78
AcsI RAATTY 2 cut(s) 301, 400
AfaI GTAC 2 cut(s) 290, 443
AfiI CCNNNNNNNGG 1 cut(s) 78
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 5 cut(s) 158, 184, 301, 500, 546
AjiI CACGTC 1 cut(s) 277
AjnI CCWGG 1 cut(s) 323
AjuI GAANNNNNNNTTGG 2 cut(s) 61, 93
AluBI AGCT 1 cut(s) 177
AluI AGCT 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 267
ApeKI GCWGC 2 cut(s) 31, 44
ApoI RAATTY 2 cut(s) 301, 400
Asp700I GAANNNNTTC 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 478
AsuC2I CCSGG 2 cut(s) 167, 413
AvaII GGWCC 1 cut(s) 478
BaeGI GKGCMC 1 cut(s) 167
BbvI GCAGC 2 cut(s) 18, 56
BccI CCATC 2 cut(s) 355, 410
BceAI ACGGC 1 cut(s) 405
BciT130I CCWGG 1 cut(s) 325
BcnI CCSGG 2 cut(s) 167, 413
BcoDI GTCTC 1 cut(s) 267
BisI GCNGC 2 cut(s) 32, 45
BlsI GCNGC 2 cut(s) 33, 46
BmcAI AGTACT 1 cut(s) 290
Bme1390I CCNGG 3 cut(s) 167, 325, 413
Bme18I GGWCC 1 cut(s) 478
BmgBI CACGTC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 478
BmrFI CCNGG 3 cut(s) 167, 325, 413
BmrI ACTGGG 1 cut(s) 435
BmuI ACTGGG 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 332
BpuMI CCSGG 2 cut(s) 167, 413
BsaJI CCNNGG 1 cut(s) 481
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 430
BseBI CCWGG 1 cut(s) 325
BseDI CCNNGG 1 cut(s) 481
BseGI GGATG 1 cut(s) 421
BseLI CCNNNNNNNGG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 306
BseNI ACTGG 1 cut(s) 430
BseSI GKGCMC 1 cut(s) 167
BseXI GCAGC 2 cut(s) 18, 56
BsiSI CCGG 3 cut(s) 167, 270, 412
BslI CCNNNNNNNGG 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 267
BsmBI CGTCTC 1 cut(s) 267
BsmI GAATGC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 305
BsrI ACTGG 1 cut(s) 430
BssECI CCNNGG 1 cut(s) 481
Bst2UI CCWGG 1 cut(s) 325
Bst4CI ACNGT 4 cut(s) 113, 482, 505, 511
Bst6I CTCTTC 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 8, 434
BstDEI CTNAG 1 cut(s) 292
BstDSI CCRYGG 1 cut(s) 481
BstF5I GGATG 1 cut(s) 421
BstMAI GTCTC 1 cut(s) 267
BstNI CCWGG 1 cut(s) 325
BstSCI CCNGG 3 cut(s) 165, 323, 411
BstSLI GKGCMC 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 18, 56
BtgI CCRYGG 1 cut(s) 481
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 1 cut(s) 421
BtsIMutI CAGTG 1 cut(s) 510
Cac8I GCNNGC 2 cut(s) 8, 434
Cfr13I GGNCC 1 cut(s) 478
Csp6I GTAC 2 cut(s) 289, 442
CviAII CATG 1 cut(s) 370
CviJI RGCY 5 cut(s) 98, 170, 177, 392, 486
CviKI_1 RGCY 5 cut(s) 98, 170, 177, 392, 486
CviQI GTAC 2 cut(s) 289, 442
DdeI CTNAG 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
Eco32I GATATC 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 323
EcoRV GATATC 1 cut(s) 409
EcoT22I ATGCAT 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 1 cut(s) 373
FatI CATG 1 cut(s) 369
Fnu4HI GCNGC 2 cut(s) 32, 45
FokI GGATG 1 cut(s) 428
Fsp4HI GCNGC 2 cut(s) 32, 45
GluI GCNGC 2 cut(s) 32, 45
HapII CCGG 3 cut(s) 167, 270, 412
Hin1II CATG 1 cut(s) 373
HpaII CCGG 3 cut(s) 167, 270, 412
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 1 cut(s) 478
Hpy99I CGWCG 1 cut(s) 44
HpyCH4III ACNGT 4 cut(s) 113, 482, 505, 511
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 5 cut(s) 125, 146, 267, 369, 387
HpyF3I CTNAG 1 cut(s) 292
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 1 cut(s) 373
LpnPI CCDG 7 cut(s) 180, 283, 296, 310, 337, 411, 425
Lsp1109I GCAGC 2 cut(s) 18, 56
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 505
MboII GAAGA 2 cut(s) 15, 385
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 5 cut(s) 102, 262, 301, 400, 546
MnlI CCTC 2 cut(s) 356, 413
Mph1103I ATGCAT 1 cut(s) 127
MroXI GAANNNNTTC 1 cut(s) 253
MseI TTAA 2 cut(s) 330, 553
MspI CCGG 3 cut(s) 167, 270, 412
MspR9I CCNGG 3 cut(s) 167, 325, 413
Mva1269I GAATGC 1 cut(s) 125
MvaI CCWGG 1 cut(s) 325
NciI CCSGG 2 cut(s) 167, 413
NlaIII CATG 1 cut(s) 373
NmuCI GTSAC 1 cut(s) 505
NsiI ATGCAT 1 cut(s) 127
PctI GAATGC 1 cut(s) 125
PdmI GAANNNNTTC 1 cut(s) 253
PflMI CCANNNNNTGG 1 cut(s) 78
PfoI TCCNGGA 1 cut(s) 411
PkrI GCNGC 2 cut(s) 33, 46
Psp6I CCWGG 1 cut(s) 323
PspGI CCWGG 1 cut(s) 323
PspPI GGNCC 1 cut(s) 478
RsaI GTAC 2 cut(s) 290, 443
RsaNI GTAC 2 cut(s) 289, 442
SaqAI TTAA 2 cut(s) 330, 553
SatI GCNGC 2 cut(s) 32, 45
Sau96I GGNCC 1 cut(s) 478
ScaI AGTACT 1 cut(s) 290
ScrFI CCNGG 3 cut(s) 167, 325, 413
SduI GDGCHC 1 cut(s) 167
SetI ASST 4 cut(s) 79, 179, 279, 348
SinI GGWCC 1 cut(s) 478
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 5 cut(s) 102, 262, 301, 400, 546
StyD4I CCNGG 3 cut(s) 165, 323, 411
TaaI ACNGT 4 cut(s) 113, 482, 505, 511
TaiI ACGT 1 cut(s) 279
TasI AATT 5 cut(s) 102, 262, 301, 400, 546
TatI WGTACW 1 cut(s) 288
Tru1I TTAA 2 cut(s) 330, 553
Tru9I TTAA 2 cut(s) 330, 553
TscAI CASTG 1 cut(s) 510
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 2 cut(s) 31, 44
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 2 cut(s) 356, 386
TspRI CASTG 1 cut(s) 510
Van91I CCANNNNNTGG 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 478
XapI RAATTY 2 cut(s) 301, 400
XmnI GAANNNNTTC 1 cut(s) 253
ZrmI AGTACT 1 cut(s) 290
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.