Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8389779.1

Orthogroup ID

OG0000484

Physical Location & Seq

Genomic Coordinates Forward (+)

42 .. 1099

Gene Structure 1058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8389779.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggattggtcaaatgggtgtgtgagaaagactccgctagcttgcaatggcgacaagtttctgaagtactctggggtcaaatttccaaacacagaacaatcctggtttaacaaaagtatgagcctcaaggaatgcgagatggagtgcaccagaaactgttcctgcactgcttattcaaatttgtatattagcgaaggaggaactgggtgcttgatgtggtttggcgatctgattgatatgagaaatctcactgaaaatggacaagatatttacataaggatggcagcatcagaacaagatccagaagactatacaaagatcaatggtaaacttgctaatttcaatgtgaagaaaaggaggatcatattaagctgtatcgtgccatctactggactgctgatcctgggcctagcattctgtctatacatttgccagaagaaacatcaaaaagatggaaaactgacgcacagcaagaaggaagatcttgaattaccattgtttgacttggctactattgtctctgcaaccagcaacttttcaaacgacaataagcttggagaaggtggttttggatgcgtctttaagactgcagagtatggactttggtcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

203

Amino Acids

22.79

Weight (kDa)

7.43

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27290 AT4G27290
fragaria_vesca	FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g21310 FvH4_3g21310
malus_domestica	MD05G1219900.v1.1 MD05G1220200.v1.1 MD05G1230800.v1.1 MD05G1231100.v1.1 MD05G1231700.v1.1 MD05G1232100.v1.1 MD05G1232400.v1.1 MD05G1233000.v1.1 MD10G1202800.v1.1
prunus_persica	Prupe.4G139500_v2.0.a1 Prupe.4G139500_v2.0.a1
pyrus_communis	pycom05g20170 pycom05g20200 pycom05g20230 pycom05g20250 pycom05g20260 pycom05g20280 pycom05g20320 pycom05g20370 pycom05g20380 pycom05g24850 pycom10g17340
rosa_chinensis	RchiOBHm_Chr5g0026351 RchiOBHm_Chr5g0026371 RchiOBHm_Chr5g0026381 RchiOBHm_Chr5g0026411 RchiOBHm_Chr5g0026551 RchiOBHm_Chr5g0036371
rosa_laevigata	RLG00000032923 RLG00000032926 RLG00000032927 RLG00000032928 RLG00000032934 RLG00000033692
rosa_multiflora	Rmu_co8389779.1_g000001 Rmu_sc0000712.1_g000012 Rmu_sc0001017.1_g000026 Rmu_sc0001114.1_g000001 Rmu_sc0001114.1_g000002 Rmu_sc0001114.1_g000008 Rmu_sc0005581.1_g000006 Rmu_sc0005581.1_g000007 Rmu_sc0006059.1_g000052 Rmu_sc0042966.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044440 Rroxscaffold_1G00052930 Rroxscaffold_1G00052980 Rroxscaffold_1G00052990 Rroxscaffold_1G00053000
rosa_rugosa	Rorug05G0092500 Rorug05G0092500 Rorug05G0092500 Rorug05G0092600 Rorug05G0092700 Rorug05G0092700 Rorug05G0093700 Rorug05G0155200 Rorug05G0155800 Rorug05G0155800
rosa_samantha	Rh5AG185700 Rh5AG186300 Rh5BG182600 Rh5BG182900 Rh5BG183600 Rh5BG249400 Rh5CG202000 Rh5CG202100 Rh5CG202200 Rh5CG203400 Rh5CG281200 Rh5DG184400 Rh5DG184500 Rh5DG185900
rosa_wichuraiana	Rw5G016850 Rw5G016870 Rw5G016930 Rw5G022870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	389
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	3 cut(s)	293, 368, 394
AcsI	RAATTY	2 cut(s)	80, 178
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	389
AgsI	TTSAA	4 cut(s)	177, 343, 488, 540
AjnI	CCWGG	2 cut(s)	101, 402
AjuI	GAANNNNNNNTTGG	2 cut(s)	552, 584
AluBI	AGCT	3 cut(s)	41, 372, 553
AluI	AGCT	3 cut(s)	41, 372, 553
Alw21I	GWGCWC	1 cut(s)	149
Alw26I	GTCTC	1 cut(s)	523
Alw44I	GTGCAC	1 cut(s)	145
AlwI	GGATC	3 cut(s)	293, 368, 394
AlwNI	CAGNNNCTG	1 cut(s)	156
AoxI	GGCC	1 cut(s)	406
ApaLI	GTGCAC	1 cut(s)	145
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	2 cut(s)	80, 178
Asp700I	GAANNNNTTC	1 cut(s)	157
AspS9I	GGNCC	1 cut(s)	406
AsuNHI	GCTAGC	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	149
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	4 cut(s)	133, 274, 391, 446
BciT130I	CCWGG	2 cut(s)	103, 404
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	2 cut(s)	38, 410
BfmI	CTRYAG	1 cut(s)	588
BglII	AGATCT	1 cut(s)	481
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
BmcAI	AGTACT	1 cut(s)	68
Bme1390I	CCNGG	2 cut(s)	103, 404
BmgT120I	GGNCC	1 cut(s)	406
BmrFI	CCNGG	2 cut(s)	103, 404
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	2 cut(s)	296, 563
BmtI	GCTAGC	1 cut(s)	41
BmuI	ACTGGG	1 cut(s)	213
BoxI	GACNNNNGTC	1 cut(s)	604
BpiI	GAAGAC	1 cut(s)	312
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
BpuEI	CTTGAG	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	2 cut(s)	208, 394
Bse3DI	GCAATG	1 cut(s)	52
BseBI	CCWGG	2 cut(s)	103, 404
BseDI	CCNNGG	1 cut(s)	403
BseGI	GGATG	2 cut(s)	285, 578
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMI	GCAATG	1 cut(s)	52
BseNI	ACTGG	2 cut(s)	208, 394
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	296
BsgI	GTGCAG	1 cut(s)	148
BshFI	GGCC	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	1 cut(s)	523
BsmI	GAATGC	2 cut(s)	137, 413
BsnI	GGCC	1 cut(s)	408
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	6 cut(s)	226, 298, 318, 360, 399, 481
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	408
BspMAI	CTGCAG	1 cut(s)	592
BspOI	GCTAGC	1 cut(s)	41
BspPI	GGATC	3 cut(s)	293, 368, 394
BsrDI	GCAATG	1 cut(s)	52
BsrI	ACTGG	2 cut(s)	208, 394
BssECI	CCNNGG	1 cut(s)	403
BssMI	GATC	6 cut(s)	226, 298, 318, 360, 399, 481
Bst2UI	CCWGG	2 cut(s)	103, 404
Bst4CI	ACNGT	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	39, 43
BstF5I	GGATG	2 cut(s)	285, 578
BstKTI	GATC	6 cut(s)	229, 301, 321, 363, 402, 484
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	6 cut(s)	226, 298, 318, 360, 399, 481
BstNI	CCWGG	2 cut(s)	103, 404
BstPAI	GACNNNNGTC	1 cut(s)	604
BstSCI	CCNGG	2 cut(s)	101, 402
BstSFI	CTRYAG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	296
BstV2I	GAAGAC	1 cut(s)	312
BstX2I	RGATCY	2 cut(s)	298, 481
BstYI	RGATCY	2 cut(s)	298, 481
BsuRI	GGCC	1 cut(s)	408
BtsCI	GGATG	2 cut(s)	285, 578
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	2 cut(s)	165, 249
Cac8I	GCNNGC	2 cut(s)	39, 43
CaiI	CAGNNNCTG	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	406
CseI	GACGC	2 cut(s)	472, 565
Csp6I	GTAC	1 cut(s)	67
CviJI	RGCY	6 cut(s)	41, 123, 372, 408, 509, 553
CviKI_1	RGCY	6 cut(s)	41, 123, 372, 408, 509, 553
CviQI	GTAC	1 cut(s)	67
DpnI	GATC	6 cut(s)	228, 300, 320, 362, 401, 483
DpnII	GATC	6 cut(s)	226, 298, 318, 360, 399, 481
Eco57I	CTGAAG	1 cut(s)	83
EcoRII	CCWGG	2 cut(s)	101, 402
FaiI	YATR	9 cut(s)	119, 186, 239, 275, 312, 365, 424, 597, 610
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	2 cut(s)	292, 585
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	2 cut(s)	38, 410
GluI	GCNGC	1 cut(s)	285
HaeIII	GGCC	1 cut(s)	408
HgaI	GACGC	2 cut(s)	472, 565
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	147, 329
Hpy188I	TCNGA	3 cut(s)	63, 231, 292
Hpy188III	TCNNGA	2 cut(s)	302, 485
Hpy8I	GTNNAC	2 cut(s)	147, 329
HpyAV	CCTTC	3 cut(s)	188, 469, 554
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	5 cut(s)	45, 147, 165, 524, 590
Kzo9I	GATC	6 cut(s)	226, 298, 318, 360, 399, 481
Lsp1109I	GCAGC	1 cut(s)	296
LweI	GCATC	2 cut(s)	296, 563
MaeI	CTAG	2 cut(s)	38, 410
MalI	GATC	6 cut(s)	228, 300, 320, 362, 401, 483
MboI	GATC	6 cut(s)	226, 298, 318, 360, 399, 481
MboII	GAAGA	4 cut(s)	317, 361, 448, 491
MflI	RGATCY	2 cut(s)	298, 481
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	4 cut(s)	80, 178, 337, 488
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	3 cut(s)	134, 191, 351
MroXI	GAANNNNTTC	1 cut(s)	157
MseI	TTAA	3 cut(s)	108, 368, 582
MslI	CAYNNNNRTG	1 cut(s)	278
MspR9I	CCNGG	2 cut(s)	103, 404
Mva1269I	GAATGC	2 cut(s)	137, 413
MvaI	CCWGG	2 cut(s)	103, 404
NdeII	GATC	6 cut(s)	226, 298, 318, 360, 399, 481
NheI	GCTAGC	1 cut(s)	37
PctI	GAATGC	2 cut(s)	137, 413
PdmI	GAANNNNTTC	1 cut(s)	157
PflMI	CCANNNNNTGG	1 cut(s)	389
PkrI	GCNGC	1 cut(s)	286
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PshAI	GACNNNNGTC	1 cut(s)	604
Psp6I	CCWGG	2 cut(s)	101, 402
PspGI	CCWGG	2 cut(s)	101, 402
PspPI	GGNCC	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	156
PsuI	RGATCY	2 cut(s)	298, 481
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	3 cut(s)	108, 368, 582
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	6 cut(s)	226, 298, 318, 360, 399, 481
Sau96I	GGNCC	1 cut(s)	406
ScaI	AGTACT	1 cut(s)	68
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	2 cut(s)	103, 404
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	4 cut(s)	43, 374, 555, 565
SfaNI	GCATC	2 cut(s)	296, 563
SfcI	CTRYAG	1 cut(s)	588
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	4 cut(s)	80, 178, 337, 488
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	2 cut(s)	38, 410
StyD4I	CCNGG	2 cut(s)	101, 402
TaaI	ACNGT	1 cut(s)	158
TasI	AATT	4 cut(s)	80, 178, 337, 488
TatI	WGTACW	1 cut(s)	66
Tru1I	TTAA	3 cut(s)	108, 368, 582
Tru9I	TTAA	3 cut(s)	108, 368, 582
TscAI	CASTG	2 cut(s)	172, 256
TseI	GCWGC	1 cut(s)	284
TspRI	CASTG	2 cut(s)	172, 256
Van91I	CCANNNNNTGG	1 cut(s)	389
VneI	GTGCAC	1 cut(s)	145
XapI	RAATTY	2 cut(s)	80, 178
XmnI	GAANNNNTTC	1 cut(s)	157
XspI	CTAG	2 cut(s)	38, 410
ZrmI	AGTACT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.