Rh5BG183600

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000484
Physical Location & Seq
Reverse (-)
20192210 .. 20192989
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG183600.1

Sequence Viewer

Length: 780 bp
ATGTCATCATGGAAAAGTCCCCAGGATCCTTCCCAAGGCAACTATACATTTCAAAATGGTCCCAAAGGATATGCAGAGCAGATTATGATGGAGGGTTCGGTCATGAAATTTCGGACCGGACCATGGAATGGAATCCGCTTCAGTGGAGCGCCTCATTTAAGTCCAAATCCAATATACACATACAATCTTCTTTTTGATCATGATGAAGAATATTATTCTTATAAGCTTCTTAACAGGTCAATTCTTTCCAGGCTGGTGTTGGCTCAAGATGGGCTTGTGCACCGATACACATGGATTGATAGAACCCGGGAATGGTTCCTTCATCTAACAGCACAACTTGATAGCTGTGATACCTATGCACTTTGTGCTGCATATGGTGTATGTAATATTGAGAACTCCCCAGCATGTGGGTGCTTGAAAGGATTTTCACCTAAATATCCGAAAGATTGGGAAGTGATGGATTGGTCAAATGGTTGTGTCAGAAAGACTCCACTGAGTTGCAATGGAGACATATTTCAGAAGTACTATGGGGTGAAATTGCCAAGCACAGAACAATCCTGGTTCAACACAAGTATGAACATCAAGGAATGTGAAATGATGTGCACAAAGAACTGTTCCTGCACAGCTTATTCAAATTTGTATATCAGTCAAGGAGGGACTGGGTGCCGGATGTGGTTTGGTGACCTGATTGATATTACTATTAGAAATTTCACTAAAAATGGGGAAGATCTCTATATACGAATGGCCGCATCAGAACTACCTACAGGTATGGAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

259

Amino Acids

29.59

Weight (kDa)

6.1

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 37 - 145 9e-31 S-locus glycoprotein domain
PAN_2 PF08276 167 - 232 3.4e-19 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27290 AT4G27290
fragaria_vesca FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g21310 FvH4_3g21310
malus_domestica MD05G1219900.v1.1 MD05G1220200.v1.1 MD05G1230800.v1.1 MD05G1231100.v1.1 MD05G1231700.v1.1 MD05G1232100.v1.1 MD05G1232400.v1.1 MD05G1233000.v1.1 MD10G1202800.v1.1
prunus_persica Prupe.4G139500_v2.0.a1 Prupe.4G139500_v2.0.a1
pyrus_communis pycom05g20170 pycom05g20200 pycom05g20230 pycom05g20250 pycom05g20260 pycom05g20280 pycom05g20320 pycom05g20370 pycom05g20380 pycom05g24850 pycom10g17340
rosa_chinensis RchiOBHm_Chr5g0026351 RchiOBHm_Chr5g0026371 RchiOBHm_Chr5g0026381 RchiOBHm_Chr5g0026411 RchiOBHm_Chr5g0026551 RchiOBHm_Chr5g0036371
rosa_laevigata RLG00000032923 RLG00000032926 RLG00000032927 RLG00000032928 RLG00000032934 RLG00000033692
rosa_multiflora Rmu_co8389779.1_g000001 Rmu_sc0000712.1_g000012 Rmu_sc0001017.1_g000026 Rmu_sc0001114.1_g000001 Rmu_sc0001114.1_g000002 Rmu_sc0001114.1_g000008 Rmu_sc0005581.1_g000006 Rmu_sc0005581.1_g000007 Rmu_sc0006059.1_g000052 Rmu_sc0042966.1_g000001
rosa_roxburghii Rroxscaffold_1G00044440 Rroxscaffold_1G00052930 Rroxscaffold_1G00052980 Rroxscaffold_1G00052990 Rroxscaffold_1G00053000
rosa_rugosa Rorug05G0092500 Rorug05G0092500 Rorug05G0092500 Rorug05G0092600 Rorug05G0092700 Rorug05G0092700 Rorug05G0093700 Rorug05G0155200 Rorug05G0155800 Rorug05G0155800
rosa_samantha Rh5AG185700 Rh5AG186300 Rh5BG182600 Rh5BG182900 Rh5BG183600 Rh5BG249400 Rh5CG202000 Rh5CG202100 Rh5CG202200 Rh5CG203400 Rh5CG281200 Rh5DG184400 Rh5DG184500 Rh5DG185900
rosa_wichuraiana Rw5G016850 Rw5G016870 Rw5G016930 Rw5G022870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 222
AccB1I GGYRCC 1 cut(s) 663
AccB7I CCANNNNNTGG 2 cut(s) 128, 407
AciI CCGC 2 cut(s) 136, 747
AclWI GGATC 2 cut(s) 20, 33
AcoI YGGCCR 1 cut(s) 744
AcsI RAATTY 3 cut(s) 107, 634, 706
AcuI CTGAAG 1 cut(s) 124
AdeI CACNNNGTG 1 cut(s) 365
AfaI GTAC 1 cut(s) 524
AfiI CCNNNNNNNGG 5 cut(s) 35, 123, 128, 312, 407
AgsI TTSAA 4 cut(s) 53, 418, 565, 633
AjnI CCWGG 3 cut(s) 21, 248, 557
AluBI AGCT 3 cut(s) 226, 345, 626
AluI AGCT 3 cut(s) 226, 345, 626
Alw21I GWGCWC 2 cut(s) 282, 605
Alw26I GTCTC 1 cut(s) 501
Alw44I GTGCAC 2 cut(s) 278, 601
AlwI GGATC 2 cut(s) 20, 33
Ama87I CYCGRG 1 cut(s) 306
AoxI GGCC 1 cut(s) 744
ApaLI GTGCAC 2 cut(s) 278, 601
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 3 cut(s) 107, 634, 706
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 3 cut(s) 59, 114, 119
AsuC2I CCSGG 2 cut(s) 307, 308
AsuHPI GGTGA 3 cut(s) 420, 544, 692
AvaI CYCGRG 1 cut(s) 306
AvaII GGWCC 3 cut(s) 59, 114, 119
BaeGI GKGCMC 2 cut(s) 282, 605
BamHI GGATCC 1 cut(s) 25
BanI GGYRCC 1 cut(s) 663
Bbv12I GWGCWC 2 cut(s) 282, 605
BbvI GCAGC 1 cut(s) 355
BccI CCATC 3 cut(s) 82, 263, 451
BciT130I CCWGG 3 cut(s) 23, 250, 559
BclI TGATCA 1 cut(s) 196
BcnI CCSGG 2 cut(s) 307, 308
BcoDI GTCTC 1 cut(s) 501
BfmI CTRYAG 1 cut(s) 762
BfoI RGCGCY 1 cut(s) 152
BglII AGATCT 1 cut(s) 727
BisI GCNGC 2 cut(s) 369, 747
BlsI GCNGC 2 cut(s) 370, 748
BmcAI AGTACT 1 cut(s) 524
Bme1390I CCNGG 5 cut(s) 23, 250, 307, 308, 559
Bme18I GGWCC 3 cut(s) 59, 114, 119
BmeT110I CYCGRG 1 cut(s) 306
BmgT120I GGNCC 3 cut(s) 59, 114, 119
BmiI GGNNCC 4 cut(s) 27, 61, 317, 665
BmrFI CCNGG 5 cut(s) 23, 250, 307, 308, 559
BmrI ACTGGG 1 cut(s) 669
BmsI GCATC 1 cut(s) 758
BmuI ACTGGG 1 cut(s) 669
BpuEI CTTGAG 1 cut(s) 249
BpuMI CCSGG 2 cut(s) 307, 308
BsaJI CCNNGG 4 cut(s) 21, 34, 122, 306
BsaWI WCCGGW 1 cut(s) 116
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 123, 128, 312, 407
Bse1I ACTGG 1 cut(s) 664
Bse3DI GCAATG 1 cut(s) 508
BseBI CCWGG 3 cut(s) 23, 250, 559
BseDI CCNNGG 4 cut(s) 21, 34, 122, 306
BseGI GGATG 1 cut(s) 675
BseLI CCNNNNNNNGG 5 cut(s) 35, 123, 128, 312, 407
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 1 cut(s) 485
BseNI ACTGG 1 cut(s) 664
BseSI GKGCMC 2 cut(s) 282, 605
BseXI GCAGC 1 cut(s) 355
BseYI CCCAGC 1 cut(s) 400
BsgI GTGCAG 1 cut(s) 604
BshFI GGCC 1 cut(s) 746
BshNI GGYRCC 1 cut(s) 663
BsiHKAI GWGCWC 2 cut(s) 282, 605
BsiHKCI CYCGRG 1 cut(s) 306
BsiSI CCGG 3 cut(s) 117, 307, 667
BslFI GGGAC 3 cut(s) 3, 45, 670
BslI CCNNNNNNNGG 5 cut(s) 35, 123, 128, 312, 407
BsmAI GTCTC 1 cut(s) 501
BsmFI GGGAC 3 cut(s) 3, 45, 670
BsnI GGCC 1 cut(s) 746
BsoBI CYCGRG 1 cut(s) 306
Bsp1286I GDGCHC 2 cut(s) 282, 605
Bsp143I GATC 3 cut(s) 25, 196, 727
Bsp19I CCATGG 1 cut(s) 122
BspACI CCGC 2 cut(s) 136, 747
BspANI GGCC 1 cut(s) 746
BspCNI CTCAG 1 cut(s) 486
BspHI TCATGA 3 cut(s) 102, 199, 776
BspLI GGNNCC 4 cut(s) 27, 61, 317, 665
BspPI GGATC 2 cut(s) 20, 33
BspT107I GGYRCC 1 cut(s) 663
BsrDI GCAATG 1 cut(s) 508
BsrI ACTGG 1 cut(s) 664
BssECI CCNNGG 4 cut(s) 21, 34, 122, 306
BssMI GATC 3 cut(s) 25, 196, 727
BssT1I CCWWGG 2 cut(s) 34, 122
Bst2UI CCWGG 3 cut(s) 23, 250, 559
Bst4CI ACNGT 1 cut(s) 614
BstAPI GCANNNNNTGC 1 cut(s) 365
BstDEI CTNAG 1 cut(s) 494
BstDSI CCRYGG 1 cut(s) 122
BstEII GGTNACC 1 cut(s) 680
BstENI CCTNNNNNAGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 675
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 3 cut(s) 28, 199, 730
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 3 cut(s) 25, 196, 727
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstNI CCWGG 3 cut(s) 23, 250, 559
BstNSI RCATGY 1 cut(s) 408
BstPI GGTNACC 1 cut(s) 680
BstSCI CCNGG 5 cut(s) 21, 248, 305, 306, 557
BstSFI CTRYAG 1 cut(s) 762
BstSLI GKGCMC 2 cut(s) 282, 605
BstV1I GCAGC 1 cut(s) 355
BstX2I RGATCY 2 cut(s) 25, 727
BstYI RGATCY 2 cut(s) 25, 727
BsuRI GGCC 1 cut(s) 746
BtgI CCRYGG 1 cut(s) 122
BtsCI GGATG 1 cut(s) 675
BtsIMutI CAGTG 2 cut(s) 148, 491
CciI TCATGA 3 cut(s) 102, 199, 776
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 3 cut(s) 59, 114, 119
Cfr9I CCCGGG 1 cut(s) 306
CpoI CGGWCCG 1 cut(s) 114
Csp6I GTAC 1 cut(s) 523
CspI CGGWCCG 1 cut(s) 114
CviAII CATG 7 cut(s) 9, 103, 123, 200, 291, 405, 777
CviJI RGCY 7 cut(s) 226, 253, 263, 274, 345, 626, 746
CviKI_1 RGCY 7 cut(s) 226, 253, 263, 274, 345, 626, 746
CviQI GTAC 1 cut(s) 523
DdeI CTNAG 1 cut(s) 494
DpnI GATC 3 cut(s) 27, 198, 729
DpnII GATC 3 cut(s) 25, 196, 727
DraIII CACNNNGTG 1 cut(s) 365
EaeI YGGCCR 1 cut(s) 744
Eco130I CCWWGG 2 cut(s) 34, 122
Eco47I GGWCC 3 cut(s) 59, 114, 119
Eco57I CTGAAG 1 cut(s) 124
Eco88I CYCGRG 1 cut(s) 306
Eco91I GGTNACC 1 cut(s) 680
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoO65I GGTNACC 1 cut(s) 680
EcoRII CCWGG 3 cut(s) 21, 248, 557
EcoT14I CCWWGG 2 cut(s) 34, 122
ErhI CCWWGG 2 cut(s) 34, 122
FaeI CATG 7 cut(s) 12, 106, 126, 203, 294, 408, 780
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FaqI GGGAC 3 cut(s) 3, 45, 670
FatI CATG 7 cut(s) 8, 102, 122, 199, 290, 404, 776
FauNDI CATATG 1 cut(s) 373
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 369, 747
FokI GGATG 1 cut(s) 682
Fsp4HI GCNGC 2 cut(s) 369, 747
GlaI GCGC 1 cut(s) 150
GluI GCNGC 2 cut(s) 369, 747
GsaI CCCAGC 1 cut(s) 404
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 1 cut(s) 746
HapII CCGG 3 cut(s) 117, 307, 667
HhaI GCGC 1 cut(s) 151
Hin1II CATG 7 cut(s) 12, 106, 126, 203, 294, 408, 780
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 3 cut(s) 132, 487, 773
HpaII CCGG 3 cut(s) 117, 307, 667
HphI GGTGA 3 cut(s) 420, 544, 692
Hpy166II GTNNAC 2 cut(s) 280, 603
Hpy188I TCNGA 5 cut(s) 114, 441, 482, 519, 754
Hpy188III TCNNGA 4 cut(s) 103, 200, 266, 777
Hpy8I GTNNAC 2 cut(s) 280, 603
HpyAV CCTTC 2 cut(s) 39, 329
HpyCH4III ACNGT 1 cut(s) 614
HpyCH4V TGCA 7 cut(s) 74, 280, 359, 371, 501, 603, 621
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 1 cut(s) 494
Hsp92II CATG 7 cut(s) 12, 106, 126, 203, 294, 408, 780
HspAI GCGC 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 3 cut(s) 25, 196, 727
LmnI GCTCC 1 cut(s) 146
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 1 cut(s) 758
MaeIII GTNAC 1 cut(s) 680
MalI GATC 3 cut(s) 27, 198, 729
MboI GATC 3 cut(s) 25, 196, 727
MboII GAAGA 3 cut(s) 179, 218, 737
MflI RGATCY 2 cut(s) 25, 727
MhlI GDGCHC 2 cut(s) 282, 605
MluCI AATT 5 cut(s) 107, 240, 536, 634, 706
MlyI GAGTC 1 cut(s) 481
MnlI CCTC 3 cut(s) 85, 162, 647
MseI TTAA 2 cut(s) 158, 231
MslI CAYNNNNRTG 2 cut(s) 409, 572
MspI CCGG 3 cut(s) 117, 307, 667
MspR9I CCNGG 5 cut(s) 23, 250, 307, 308, 559
MvaI CCWGG 3 cut(s) 23, 250, 559
MwoI GCNNNNNNNGC 1 cut(s) 365
NciI CCSGG 2 cut(s) 307, 308
NcoI CCATGG 1 cut(s) 122
NdeI CATATG 1 cut(s) 373
NdeII GATC 3 cut(s) 25, 196, 727
NlaIII CATG 7 cut(s) 12, 106, 126, 203, 294, 408, 780
NlaIV GGNNCC 4 cut(s) 27, 61, 317, 665
NmuCI GTSAC 1 cut(s) 680
NspI RCATGY 1 cut(s) 408
PagI TCATGA 3 cut(s) 102, 199, 776
PfeI GAWTC 2 cut(s) 132, 773
PflMI CCANNNNNTGG 2 cut(s) 128, 407
PkrI GCNGC 2 cut(s) 370, 748
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
PsiI TTATAA 1 cut(s) 222
Psp6I CCWGG 3 cut(s) 21, 248, 557
PspEI GGTNACC 1 cut(s) 680
PspFI CCCAGC 1 cut(s) 400
PspGI CCWGG 3 cut(s) 21, 248, 557
PspN4I GGNNCC 4 cut(s) 27, 61, 317, 665
PspPI GGNCC 3 cut(s) 59, 114, 119
PsuI RGATCY 2 cut(s) 25, 727
RsaI GTAC 1 cut(s) 524
RsaNI GTAC 1 cut(s) 523
RseI CAYNNNNRTG 2 cut(s) 409, 572
Rsr2I CGGWCCG 1 cut(s) 114
RsrII CGGWCCG 1 cut(s) 114
SaqAI TTAA 2 cut(s) 158, 231
SatI GCNGC 2 cut(s) 369, 747
Sau3AI GATC 3 cut(s) 25, 196, 727
Sau96I GGNCC 3 cut(s) 59, 114, 119
ScaI AGTACT 1 cut(s) 524
SchI GAGTC 1 cut(s) 481
ScrFI CCNGG 5 cut(s) 23, 250, 307, 308, 559
SduI GDGCHC 2 cut(s) 282, 605
SetI ASST 9 cut(s) 228, 239, 347, 356, 433, 628, 687, 763, 769
SfaNI GCATC 1 cut(s) 758
SfcI CTRYAG 1 cut(s) 762
SinI GGWCC 3 cut(s) 59, 114, 119
SmaI CCCGGG 1 cut(s) 308
SmiMI CAYNNNNRTG 2 cut(s) 409, 572
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
Sse9I AATT 5 cut(s) 107, 240, 536, 634, 706
SsiI CCGC 2 cut(s) 136, 747
SspI AATATT 2 cut(s) 212, 388
StyD4I CCNGG 5 cut(s) 21, 248, 305, 306, 557
StyI CCWWGG 2 cut(s) 34, 122
TaaI ACNGT 1 cut(s) 614
TaqII GACCGA 1 cut(s) 88
TasI AATT 5 cut(s) 107, 240, 536, 634, 706
TatI WGTACW 1 cut(s) 522
TauI GCSGC 1 cut(s) 749
TfiI GAWTC 2 cut(s) 132, 773
Tru1I TTAA 2 cut(s) 158, 231
Tru9I TTAA 2 cut(s) 158, 231
TscAI CASTG 2 cut(s) 148, 498
TseFI GTSAC 1 cut(s) 680
TseI GCWGC 1 cut(s) 368
Tsp45I GTSAC 1 cut(s) 680
TspDTI ATGAA 4 cut(s) 119, 219, 311, 590
TspMI CCCGGG 1 cut(s) 306
TspRI CASTG 2 cut(s) 148, 498
Van91I CCANNNNNTGG 2 cut(s) 128, 407
VneI GTGCAC 2 cut(s) 278, 601
VpaK11BI GGWCC 3 cut(s) 59, 114, 119
XagI CCTNNNNNAGG 1 cut(s) 33
XapI RAATTY 3 cut(s) 107, 634, 706
XceI RCATGY 1 cut(s) 408
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XmaI CCCGGG 1 cut(s) 306
ZrmI AGTACT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.