Rh5BG182900

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000484
Physical Location & Seq
Forward (+)
20085604 .. 20088948
3345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG182900.1

Sequence Viewer

Length: 981 bp
ATGCTTGCCGCAGCAGAAGACAGCACAAGTACATTTCAGTCCATCAAAGACGGCGAGACCATAGTTTCAACCGATGGAACCTTTGAGCTCGGATTCTTCACTCCTGCAGGCGCTTCTGGTATGAAGCTTGGTAGGAACACAGTTACAGGCTTCAATTGGCATCTTACATCATGGAGAAGTCCCTCTGATCCTTCTCAAGGCAACTTCACATTTCAACATGGTCCCAGGGGATATGCAGAACAAGTTCTGAGGGAGGGTTCACACATAAGATTTCGGACTGGACCATGGAATGGAATCCGGTTCAGTGGAACGCCTCATTTAGGTCCAAACTATGTTTACAGATATCAGCTAGTTTTTGATGTTCATGATCATGAAGAATACTATAGCTATAAGCTTCTCAACAGCTCAGTTCTTTCCAGGCTGGTGTTAACTCAAGATGGGCTTCTGCAGCGCTACACATGGATCGATAGAACCCAAAGTTGGTTCCTTTACTTAACAGCACAGATGGATAACTGTGACAATTATGCACTTTGTGGTGCATATGGTGCTTGCAATATTGAGAACTCCCCAGTATGCGGCTGCTTGAAAGGTTTTGTGCCAAAATTTCCAAAAGATTGGGACACAATGGATTGGTCAAATGGGTGTGTGAGGAAGACTCCACTAGCTTGCAATGGCGACAAGTTTCTGAAGTACTCTGGGGTCAAATTTCCAAACACAGAACAATCCTGGTTTAACAAAAGTATGAGCCTCAAGGAATGCGAGATGGAGTGCACCAGAAACTGTTCCTGCACTGCTTATTCAAATTTGTATATTAGCGAAGGAGGAACTGGGTGCTTGATGTGGTTTGGCGATCTGATTGATATGAGAAATCTCACTGAAAATGGACAAGATATTTACATAAGGATGGCAGCATCAGAACAAGATCCTGAAGACTATACAAAGATCAATGCTAGAATTGTTTTAGGTGTTGAAGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

326

Amino Acids

36.89

Weight (kDa)

5.23

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 91 - 202 1.9e-33 S-locus glycoprotein domain
PAN_2 PF08276 223 - 288 1.1e-20 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27290 AT4G27290
fragaria_vesca FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g21310 FvH4_3g21310
malus_domestica MD05G1219900.v1.1 MD05G1220200.v1.1 MD05G1230800.v1.1 MD05G1231100.v1.1 MD05G1231700.v1.1 MD05G1232100.v1.1 MD05G1232400.v1.1 MD05G1233000.v1.1 MD10G1202800.v1.1
prunus_persica Prupe.4G139500_v2.0.a1 Prupe.4G139500_v2.0.a1
pyrus_communis pycom05g20170 pycom05g20200 pycom05g20230 pycom05g20250 pycom05g20260 pycom05g20280 pycom05g20320 pycom05g20370 pycom05g20380 pycom05g24850 pycom10g17340
rosa_chinensis RchiOBHm_Chr5g0026351 RchiOBHm_Chr5g0026371 RchiOBHm_Chr5g0026381 RchiOBHm_Chr5g0026411 RchiOBHm_Chr5g0026551 RchiOBHm_Chr5g0036371
rosa_laevigata RLG00000032923 RLG00000032926 RLG00000032927 RLG00000032928 RLG00000032934 RLG00000033692
rosa_multiflora Rmu_co8389779.1_g000001 Rmu_sc0000712.1_g000012 Rmu_sc0001017.1_g000026 Rmu_sc0001114.1_g000001 Rmu_sc0001114.1_g000002 Rmu_sc0001114.1_g000008 Rmu_sc0005581.1_g000006 Rmu_sc0005581.1_g000007 Rmu_sc0006059.1_g000052 Rmu_sc0042966.1_g000001
rosa_roxburghii Rroxscaffold_1G00044440 Rroxscaffold_1G00052930 Rroxscaffold_1G00052980 Rroxscaffold_1G00052990 Rroxscaffold_1G00053000
rosa_rugosa Rorug05G0092500 Rorug05G0092500 Rorug05G0092500 Rorug05G0092600 Rorug05G0092700 Rorug05G0092700 Rorug05G0093700 Rorug05G0155200 Rorug05G0155800 Rorug05G0155800
rosa_samantha Rh5AG185700 Rh5AG186300 Rh5BG182600 Rh5BG182900 Rh5BG183600 Rh5BG249400 Rh5CG202000 Rh5CG202100 Rh5CG202200 Rh5CG203400 Rh5CG281200 Rh5DG184400 Rh5DG184500 Rh5DG185900
rosa_wichuraiana Rw5G016850 Rw5G016870 Rw5G016930 Rw5G022870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 290
AciI CCGC 2 cut(s) 9, 576
AclWI GGATC 3 cut(s) 182, 470, 917
AcsI RAATTY 3 cut(s) 602, 704, 802
AcuI CTGAAG 2 cut(s) 707, 948
AdeI CACNNNGTG 1 cut(s) 533
AfaI GTAC 2 cut(s) 31, 692
AfeI AGCGCT 1 cut(s) 452
AfiI CCNNNNNNNGG 5 cut(s) 197, 290, 320, 480, 575
AgsI TTSAA 6 cut(s) 69, 154, 215, 586, 801, 971
AjnI CCWGG 3 cut(s) 224, 416, 725
AjuI GAANNNNNNNTTGG 2 cut(s) 463, 495
AluBI AGCT 7 cut(s) 88, 127, 349, 387, 394, 405, 665
AluI AGCT 7 cut(s) 88, 127, 349, 387, 394, 405, 665
Alw21I GWGCWC 2 cut(s) 90, 773
Alw26I GTCTC 1 cut(s) 50
Alw44I GTGCAC 1 cut(s) 769
AlwI GGATC 3 cut(s) 182, 470, 917
AlwNI CAGNNNCTG 1 cut(s) 780
Aor51HI AGCGCT 1 cut(s) 452
ApaLI GTGCAC 1 cut(s) 769
ApeKI GCWGC 4 cut(s) 11, 448, 579, 908
ApoI RAATTY 3 cut(s) 602, 704, 802
Asp700I GAANNNNTTC 2 cut(s) 243, 781
AspLEI GCGC 2 cut(s) 113, 453
AspS9I GGNCC 3 cut(s) 221, 281, 323
AvaII GGWCC 3 cut(s) 221, 281, 323
BaeGI GKGCMC 1 cut(s) 773
BanII GRGCYC 1 cut(s) 90
BbsI GAAGAC 3 cut(s) 24, 659, 936
Bbv12I GWGCWC 2 cut(s) 90, 773
BbvI GCAGC 4 cut(s) 23, 460, 566, 920
BccI CCATC 6 cut(s) 50, 68, 431, 499, 757, 898
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 3 cut(s) 226, 418, 727
BclI TGATCA 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 3 cut(s) 350, 662, 951
BfmI CTRYAG 3 cut(s) 105, 382, 446
BfoI RGCGCY 2 cut(s) 114, 454
BisI GCNGC 6 cut(s) 9, 12, 449, 577, 580, 909
BlsI GCNGC 6 cut(s) 10, 13, 450, 578, 581, 910
BmcAI AGTACT 1 cut(s) 692
Bme1390I CCNGG 3 cut(s) 226, 418, 727
Bme18I GGWCC 3 cut(s) 221, 281, 323
BmgT120I GGNCC 3 cut(s) 221, 281, 323
BmiI GGNNCC 3 cut(s) 79, 223, 485
BmrFI CCNGG 3 cut(s) 226, 418, 727
BmrI ACTGGG 2 cut(s) 563, 837
BmsI GCATC 2 cut(s) 169, 920
BmuI ACTGGG 2 cut(s) 563, 837
BpiI GAAGAC 3 cut(s) 24, 659, 936
BplI GAGNNNNNCTC 2 cut(s) 640, 672
BpuEI CTTGAG 3 cut(s) 180, 417, 734
Bsa29I ATCGAT 1 cut(s) 465
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 224, 225, 284
BsaWI WCCGGW 1 cut(s) 297
Bsc4I CCNNNNNNNGG 5 cut(s) 197, 290, 320, 480, 575
Bse1I ACTGG 3 cut(s) 283, 569, 832
Bse3DI GCAATG 1 cut(s) 676
BseBI CCWGG 3 cut(s) 226, 418, 727
BseCI ATCGAT 1 cut(s) 465
BseDI CCNNGG 3 cut(s) 224, 225, 284
BseGI GGATG 1 cut(s) 909
BseLI CCNNNNNNNGG 5 cut(s) 197, 290, 320, 480, 575
BseMI GCAATG 1 cut(s) 676
BseMII CTCAG 2 cut(s) 239, 420
BseNI ACTGG 3 cut(s) 283, 569, 832
BseSI GKGCMC 1 cut(s) 773
BseXI GCAGC 4 cut(s) 23, 460, 566, 920
BsgI GTGCAG 1 cut(s) 772
BshVI ATCGAT 1 cut(s) 465
BsiHKAI GWGCWC 2 cut(s) 90, 773
BsiSI CCGG 1 cut(s) 298
BslFI GGGAC 3 cut(s) 165, 207, 632
BslI CCNNNNNNNGG 5 cut(s) 197, 290, 320, 480, 575
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 3 cut(s) 165, 207, 632
BsmI GAATGC 1 cut(s) 761
Bso31I GGTCTC 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 90, 773
Bsp143I GATC 6 cut(s) 187, 367, 462, 850, 922, 942
Bsp19I CCATGG 1 cut(s) 284
BspACI CCGC 2 cut(s) 9, 576
BspCNI CTCAG 2 cut(s) 240, 419
BspDI ATCGAT 1 cut(s) 465
BspHI TCATGA 2 cut(s) 364, 370
BspLI GGNNCC 3 cut(s) 79, 223, 485
BspMAI CTGCAG 2 cut(s) 109, 450
BspPI GGATC 3 cut(s) 182, 470, 917
BspTNI GGTCTC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 676
BsrI ACTGG 3 cut(s) 283, 569, 832
BssECI CCNNGG 3 cut(s) 224, 225, 284
BssMI GATC 6 cut(s) 187, 367, 462, 850, 922, 942
BssT1I CCWWGG 1 cut(s) 284
Bst2UI CCWGG 3 cut(s) 226, 418, 727
Bst4CI ACNGT 3 cut(s) 142, 515, 782
BstAPI GCANNNNNTGC 1 cut(s) 545
BstC8I GCNNGC 4 cut(s) 6, 109, 550, 667
BstDEI CTNAG 2 cut(s) 248, 406
BstDSI CCRYGG 1 cut(s) 284
BstENI CCTNNNNNAGG 2 cut(s) 195, 318
BstF5I GGATG 1 cut(s) 909
BstH2I RGCGCY 2 cut(s) 114, 454
BstHHI GCGC 2 cut(s) 113, 453
BstKTI GATC 6 cut(s) 190, 370, 465, 853, 925, 945
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 6 cut(s) 187, 367, 462, 850, 922, 942
BstMWI GCNNNNNNNGC 2 cut(s) 448, 545
BstNI CCWGG 3 cut(s) 226, 418, 727
BstSCI CCNGG 3 cut(s) 224, 416, 725
BstSFI CTRYAG 3 cut(s) 105, 382, 446
BstSLI GKGCMC 1 cut(s) 773
BstV1I GCAGC 4 cut(s) 23, 460, 566, 920
BstV2I GAAGAC 3 cut(s) 24, 659, 936
BstX2I RGATCY 1 cut(s) 922
BstXI CCANNNNNNTGG 1 cut(s) 615
BstYI RGATCY 1 cut(s) 922
Bsu15I ATCGAT 1 cut(s) 465
BsuTUI ATCGAT 1 cut(s) 465
BtgI CCRYGG 1 cut(s) 284
BtsCI GGATG 1 cut(s) 909
BtsI GCAGTG 1 cut(s) 789
BtsIMutI CAGTG 3 cut(s) 310, 789, 873
Cac8I GCNNGC 4 cut(s) 6, 109, 550, 667
CaiI CAGNNNCTG 1 cut(s) 780
CciI TCATGA 2 cut(s) 364, 370
CfoI GCGC 2 cut(s) 113, 453
Cfr13I GGNCC 3 cut(s) 221, 281, 323
ClaI ATCGAT 1 cut(s) 465
Csp6I GTAC 2 cut(s) 30, 691
CviAII CATG 6 cut(s) 171, 218, 285, 365, 371, 459
CviQI GTAC 2 cut(s) 30, 691
DdeI CTNAG 2 cut(s) 248, 406
DpnI GATC 6 cut(s) 189, 369, 464, 852, 924, 944
DpnII GATC 6 cut(s) 187, 367, 462, 850, 922, 942
DraIII CACNNNGTG 1 cut(s) 533
Ecl136II GAGCTC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 284
Eco24I GRGCYC 1 cut(s) 90
Eco31I GGTCTC 1 cut(s) 50
Eco32I GATATC 1 cut(s) 344
Eco47I GGWCC 3 cut(s) 221, 281, 323
Eco47III AGCGCT 1 cut(s) 452
Eco53kI GAGCTC 1 cut(s) 88
Eco57I CTGAAG 2 cut(s) 707, 948
EcoICRI GAGCTC 1 cut(s) 88
EcoNI CCTNNNNNAGG 2 cut(s) 195, 318
EcoRII CCWGG 3 cut(s) 224, 416, 725
EcoRV GATATC 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 6 cut(s) 174, 221, 288, 368, 374, 462
FalI AAGNNNNNCTT 2 cut(s) 426, 458
FaqI GGGAC 3 cut(s) 165, 207, 632
FatI CATG 6 cut(s) 170, 217, 284, 364, 370, 458
FauNDI CATATG 1 cut(s) 541
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 6 cut(s) 9, 12, 449, 577, 580, 909
FokI GGATG 1 cut(s) 916
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 6 cut(s) 9, 12, 449, 577, 580, 909
FspBI CTAG 3 cut(s) 350, 662, 951
GlaI GCGC 2 cut(s) 112, 452
GluI GCNGC 6 cut(s) 9, 12, 449, 577, 580, 909
HaeII RGCGCY 2 cut(s) 114, 454
HapII CCGG 1 cut(s) 298
HhaI GCGC 2 cut(s) 113, 453
Hin1II CATG 6 cut(s) 174, 221, 288, 368, 374, 462
Hin6I GCGC 2 cut(s) 111, 451
HinP1I GCGC 2 cut(s) 111, 451
HincII GTYRAC 1 cut(s) 429
HindII GTYRAC 1 cut(s) 429
HindIII AAGCTT 2 cut(s) 125, 392
HinfI GANTC 3 cut(s) 93, 294, 655
HpaI GTTAAC 1 cut(s) 429
HpaII CCGG 1 cut(s) 298
Hpy166II GTNNAC 4 cut(s) 260, 337, 429, 771
Hpy188I TCNGA 7 cut(s) 92, 187, 249, 276, 687, 855, 916
Hpy188III TCNNGA 4 cut(s) 365, 371, 434, 926
Hpy8I GTNNAC 4 cut(s) 260, 337, 429, 771
HpyAV CCTTC 2 cut(s) 201, 812
HpyCH4III ACNGT 3 cut(s) 142, 515, 782
HpyCH4V TGCA 9 cut(s) 107, 236, 448, 527, 539, 552, 669, 771, 789
HpyF10VI GCNNNNNNNGC 2 cut(s) 448, 545
HpyF3I CTNAG 2 cut(s) 248, 406
Hsp92II CATG 6 cut(s) 174, 221, 288, 368, 374, 462
HspAI GCGC 2 cut(s) 111, 451
Ksp22I TGATCA 1 cut(s) 367
KspAI GTTAAC 1 cut(s) 429
Kzo9I GATC 6 cut(s) 187, 367, 462, 850, 922, 942
Lsp1109I GCAGC 4 cut(s) 23, 460, 566, 920
LweI GCATC 2 cut(s) 169, 920
MaeI CTAG 3 cut(s) 350, 662, 951
MaeIII GTNAC 2 cut(s) 142, 515
MalI GATC 6 cut(s) 189, 369, 464, 852, 924, 944
MboI GATC 6 cut(s) 187, 367, 462, 850, 922, 942
MboII GAAGA 5 cut(s) 29, 88, 386, 664, 941
MfeI CAATTG 1 cut(s) 154
MflI RGATCY 1 cut(s) 922
MhlI GDGCHC 2 cut(s) 90, 773
MluCI AATT 6 cut(s) 154, 520, 602, 704, 802, 954
MlyI GAGTC 1 cut(s) 649
MnlI CCTC 7 cut(s) 193, 243, 247, 324, 642, 758, 815
MroXI GAANNNNTTC 2 cut(s) 243, 781
MseI TTAA 4 cut(s) 428, 494, 732, 979
MslI CAYNNNNRTG 2 cut(s) 369, 902
MspI CCGG 1 cut(s) 298
MspR9I CCNGG 3 cut(s) 226, 418, 727
MunI CAATTG 1 cut(s) 154
Mva1269I GAATGC 1 cut(s) 761
MvaI CCWGG 3 cut(s) 226, 418, 727
MwoI GCNNNNNNNGC 2 cut(s) 448, 545
NcoI CCATGG 1 cut(s) 284
NdeI CATATG 1 cut(s) 541
NdeII GATC 6 cut(s) 187, 367, 462, 850, 922, 942
NlaIII CATG 6 cut(s) 174, 221, 288, 368, 374, 462
NlaIV GGNNCC 3 cut(s) 79, 223, 485
NmuCI GTSAC 1 cut(s) 515
PagI TCATGA 2 cut(s) 364, 370
PasI CCCWGGG 1 cut(s) 225
PctI GAATGC 1 cut(s) 761
PdmI GAANNNNTTC 2 cut(s) 243, 781
PfeI GAWTC 2 cut(s) 93, 294
PflMI CCANNNNNTGG 1 cut(s) 290
PkrI GCNGC 6 cut(s) 10, 13, 450, 578, 581, 910
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
Psp124BI GAGCTC 1 cut(s) 90
Psp6I CCWGG 3 cut(s) 224, 416, 725
PspGI CCWGG 3 cut(s) 224, 416, 725
PspN4I GGNNCC 3 cut(s) 79, 223, 485
PspPI GGNCC 3 cut(s) 221, 281, 323
PstI CTGCAG 2 cut(s) 109, 450
PstNI CAGNNNCTG 1 cut(s) 780
PsuI RGATCY 1 cut(s) 922
RsaI GTAC 2 cut(s) 31, 692
RsaNI GTAC 2 cut(s) 30, 691
RseI CAYNNNNRTG 2 cut(s) 369, 902
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 4 cut(s) 428, 494, 732, 979
SatI GCNGC 6 cut(s) 9, 12, 449, 577, 580, 909
Sau3AI GATC 6 cut(s) 187, 367, 462, 850, 922, 942
Sau96I GGNCC 3 cut(s) 221, 281, 323
SbfI CCTGCAGG 1 cut(s) 109
ScaI AGTACT 1 cut(s) 692
SchI GAGTC 1 cut(s) 649
ScrFI CCNGG 3 cut(s) 226, 418, 727
SdaI CCTGCAGG 1 cut(s) 109
SduI GDGCHC 2 cut(s) 90, 773
SfaNI GCATC 2 cut(s) 169, 920
SfcI CTRYAG 3 cut(s) 105, 382, 446
SinI GGWCC 3 cut(s) 221, 281, 323
SmiMI CAYNNNNRTG 2 cut(s) 369, 902
SmlI CTYRAG 3 cut(s) 195, 432, 749
SmoI CTYRAG 3 cut(s) 195, 432, 749
Sse8387I CCTGCAGG 1 cut(s) 109
Sse9I AATT 6 cut(s) 154, 520, 602, 704, 802, 954
SsiI CCGC 2 cut(s) 9, 576
SspI AATATT 1 cut(s) 556
SspMI CTAG 3 cut(s) 350, 662, 951
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 3 cut(s) 224, 416, 725
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 3 cut(s) 142, 515, 782
TaqI TCGA 1 cut(s) 465
TasI AATT 6 cut(s) 154, 520, 602, 704, 802, 954
TatI WGTACW 2 cut(s) 29, 690
TauI GCSGC 2 cut(s) 11, 579
TfiI GAWTC 2 cut(s) 93, 294
Tru1I TTAA 4 cut(s) 428, 494, 732, 979
Tru9I TTAA 4 cut(s) 428, 494, 732, 979
TscAI CASTG 3 cut(s) 310, 796, 880
TseFI GTSAC 1 cut(s) 515
TseI GCWGC 4 cut(s) 11, 448, 579, 908
Tsp45I GTSAC 1 cut(s) 515
TspDTI ATGAA 3 cut(s) 137, 353, 387
TspRI CASTG 3 cut(s) 310, 796, 880
Van91I CCANNNNNTGG 1 cut(s) 290
VneI GTGCAC 1 cut(s) 769
VpaK11BI GGWCC 3 cut(s) 221, 281, 323
XagI CCTNNNNNAGG 2 cut(s) 195, 318
XapI RAATTY 3 cut(s) 602, 704, 802
XmnI GAANNNNTTC 2 cut(s) 243, 781
XspI CTAG 3 cut(s) 350, 662, 951
ZrmI AGTACT 1 cut(s) 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.