Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0000484

Physical Location & Seq

Genomic Coordinates Reverse (-)

23060265 .. 23061157

Gene Structure 893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g20250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAGGTTCACCAACCCCGGAATACTTGTCCTTAATCACAATAAGAGCACAGTTTGGTCCTCCAACACATCAAGAACTGCACAGAATCCAGTGGCACGTCTTTTGGATTCGGGTAATGTTGTCGTGATAGATAGGAGTGATGATGCCCCTGAGAACTTTCTGTGGCAAAGTTTTGATTACCCTGGTGATACATACTTACCAGGTACGAAACTTGGTAGGAACACAGTTACAGGCTTCAATTGCCATCTTAGATCGTGGAAAAGTCATCAGGATCCTCTTAAGGGTTCGGTCATAAAATTTTGGTCTGGACCATGGAAAGGAGTCCGGTTCAATGGAACGCCTCAGTTAAATCCAAACCCTATATACACATACAGTCTGGTTTCTAAGCCTGATGAAATGTACTACAGTTACAAGCTTCGCAACAGCTCAATCCTTTCGAGGGTGGTGTTAAATTCAGATGGACTTGTGTGGCATTATACATGGATTGATAGAACCAAAGGATGCACACCAAAGTTTCCGAAAGAATGGGATTTGGTGGATTGGTCTCATGGATGTGTGAGAAAGACTTCTCTAAATTGCACTGGAGATGTGTTCCAAAAGTACTCGGGGTTGAAATTTCCTAGCATAGAACAATCCTGGCTTAACAGAAGTATGAACCCCAAGGAATGTGAGATGGTGTGCATGAAGAACTGCTCATGCACGGCTTATACAAATTTGGATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

242

Amino Acids

27.6

Weight (kDa)

9.06

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	3 - 87	3.4e-25	D-mannose binding lectin
S_locus_glycop	PF00954	101 - 166	9.3e-11	S-locus glycoprotein domain
PAN_2	PF08276	193 - 240	3.7e-10	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27290 AT4G27290
fragaria_vesca	FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g21310 FvH4_3g21310
malus_domestica	MD05G1219900.v1.1 MD05G1220200.v1.1 MD05G1230800.v1.1 MD05G1231100.v1.1 MD05G1231700.v1.1 MD05G1232100.v1.1 MD05G1232400.v1.1 MD05G1233000.v1.1 MD10G1202800.v1.1
prunus_persica	Prupe.4G139500_v2.0.a1 Prupe.4G139500_v2.0.a1
pyrus_communis	pycom05g20170 pycom05g20200 pycom05g20230 pycom05g20250 pycom05g20260 pycom05g20280 pycom05g20320 pycom05g20370 pycom05g20380 pycom05g24850 pycom10g17340
rosa_chinensis	RchiOBHm_Chr5g0026351 RchiOBHm_Chr5g0026371 RchiOBHm_Chr5g0026381 RchiOBHm_Chr5g0026411 RchiOBHm_Chr5g0026551 RchiOBHm_Chr5g0036371
rosa_laevigata	RLG00000032923 RLG00000032926 RLG00000032927 RLG00000032928 RLG00000032934 RLG00000033692
rosa_multiflora	Rmu_co8389779.1_g000001 Rmu_sc0000712.1_g000012 Rmu_sc0001017.1_g000026 Rmu_sc0001114.1_g000001 Rmu_sc0001114.1_g000002 Rmu_sc0001114.1_g000008 Rmu_sc0005581.1_g000006 Rmu_sc0005581.1_g000007 Rmu_sc0006059.1_g000052 Rmu_sc0042966.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044440 Rroxscaffold_1G00052930 Rroxscaffold_1G00052980 Rroxscaffold_1G00052990 Rroxscaffold_1G00053000
rosa_rugosa	Rorug05G0092500 Rorug05G0092500 Rorug05G0092500 Rorug05G0092600 Rorug05G0092700 Rorug05G0092700 Rorug05G0093700 Rorug05G0155200 Rorug05G0155800 Rorug05G0155800
rosa_samantha	Rh5AG185700 Rh5AG186300 Rh5BG182600 Rh5BG182900 Rh5BG183600 Rh5BG249400 Rh5CG202000 Rh5CG202100 Rh5CG202200 Rh5CG203400 Rh5CG281200 Rh5DG184400 Rh5DG184500 Rh5DG185900
rosa_wichuraiana	Rw5G016850 Rw5G016870 Rw5G016930 Rw5G022870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	266, 279
AcsI	RAATTY	4 cut(s)	296, 451, 614, 712
AfaI	GTAC	3 cut(s)	205, 401, 602
AfiI	CCNNNNNNNGG	3 cut(s)	281, 317, 439
AflII	CTTAAG	1 cut(s)	278
AgsI	TTSAA	3 cut(s)	238, 331, 613
AjiI	CACGTC	1 cut(s)	98
AjnI	CCWGG	3 cut(s)	181, 199, 635
AluBI	AGCT	2 cut(s)	415, 426
AluI	AGCT	2 cut(s)	415, 426
Alw21I	GWGCWC	1 cut(s)	50
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	2 cut(s)	266, 279
Ama87I	CYCGRG	1 cut(s)	604
ApoI	RAATTY	4 cut(s)	296, 451, 614, 712
Asp700I	GAANNNNTTC	1 cut(s)	565
AspS9I	GGNCC	2 cut(s)	57, 308
AsuC2I	CCSGG	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	604
AvaII	GGWCC	2 cut(s)	57, 308
BamHI	GGATCC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	50
BccI	CCATC	3 cut(s)	252, 452, 667
BceAI	ACGGC	1 cut(s)	717
BciT130I	CCWGG	3 cut(s)	183, 201, 637
BcnI	CCSGG	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	2 cut(s)	621, 724
BfmI	CTRYAG	1 cut(s)	403
BfrI	CTTAAG	1 cut(s)	278
BmcAI	AGTACT	1 cut(s)	602
Bme1390I	CCNGG	4 cut(s)	18, 183, 201, 637
Bme18I	GGWCC	2 cut(s)	57, 308
BmeT110I	CYCGRG	1 cut(s)	604
BmgBI	CACGTC	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	57, 308
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	4 cut(s)	18, 183, 201, 637
BmsI	GCATC	2 cut(s)	133, 491
BpmI	CTGGAG	1 cut(s)	603
BpuMI	CCSGG	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	549
BsaJI	CCNNGG	4 cut(s)	16, 181, 311, 660
BsaWI	WCCGGW	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	3 cut(s)	281, 317, 439
Bse1I	ACTGG	2 cut(s)	89, 586
BseBI	CCWGG	3 cut(s)	183, 201, 637
BseDI	CCNNGG	4 cut(s)	16, 181, 311, 660
BseGI	GGATG	2 cut(s)	506, 557
BseLI	CCNNNNNNNGG	3 cut(s)	281, 317, 439
BseMII	CTCAG	2 cut(s)	141, 356
BseNI	ACTGG	2 cut(s)	89, 586
BsgI	GTGCAG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	604
BsiSI	CCGG	2 cut(s)	18, 325
BslI	CCNNNNNNNGG	3 cut(s)	281, 317, 439
BsmAI	GTCTC	1 cut(s)	549
Bso31I	GGTCTC	1 cut(s)	549
BsoBI	CYCGRG	1 cut(s)	604
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	251, 271
Bsp19I	CCATGG	1 cut(s)	311
BspCNI	CTCAG	2 cut(s)	142, 355
BspLI	GGNNCC	1 cut(s)	273
BspPI	GGATC	2 cut(s)	266, 279
BspTI	CTTAAG	1 cut(s)	278
BspTNI	GGTCTC	1 cut(s)	549
BsrI	ACTGG	2 cut(s)	89, 586
BssECI	CCNNGG	4 cut(s)	16, 181, 311, 660
BssMI	GATC	2 cut(s)	251, 271
BssT1I	CCWWGG	2 cut(s)	311, 660
Bst2UI	CCWGG	3 cut(s)	183, 201, 637
Bst4CI	ACNGT	4 cut(s)	52, 226, 374, 407
BstAFI	CTTAAG	1 cut(s)	278
BstDEI	CTNAG	4 cut(s)	150, 248, 342, 384
BstDSI	CCRYGG	1 cut(s)	311
BstF5I	GGATG	2 cut(s)	506, 557
BstKTI	GATC	2 cut(s)	254, 274
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	2 cut(s)	251, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	240
BstNI	CCWGG	3 cut(s)	183, 201, 637
BstSCI	CCNGG	4 cut(s)	16, 181, 199, 635
BstSFI	CTRYAG	1 cut(s)	403
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BtgI	CCRYGG	1 cut(s)	311
BtrI	CACGTC	1 cut(s)	98
BtsCI	GGATG	2 cut(s)	506, 557
BtsIMutI	CAGTG	2 cut(s)	96, 579
Cfr13I	GGNCC	2 cut(s)	57, 308
CsiI	ACCWGGT	1 cut(s)	199
Csp6I	GTAC	3 cut(s)	204, 400, 601
CviAII	CATG	5 cut(s)	312, 480, 548, 682, 696
CviJI	RGCY	6 cut(s)	234, 388, 415, 426, 640, 704
CviKI_1	RGCY	6 cut(s)	234, 388, 415, 426, 640, 704
CviQI	GTAC	3 cut(s)	204, 400, 601
DdeI	CTNAG	4 cut(s)	150, 248, 342, 384
DpnI	GATC	2 cut(s)	253, 273
DpnII	GATC	2 cut(s)	251, 271
Eco130I	CCWWGG	2 cut(s)	311, 660
Eco31I	GGTCTC	1 cut(s)	549
Eco32I	GATATC	1 cut(s)	721
Eco47I	GGWCC	2 cut(s)	57, 308
Eco88I	CYCGRG	1 cut(s)	604
EcoRII	CCWGG	3 cut(s)	181, 199, 635
EcoRV	GATATC	1 cut(s)	721
EcoT14I	CCWWGG	2 cut(s)	311, 660
ErhI	CCWWGG	2 cut(s)	311, 660
FaeI	CATG	5 cut(s)	315, 483, 551, 685, 699
FatI	CATG	5 cut(s)	311, 479, 547, 681, 695
FokI	GGATG	2 cut(s)	513, 564
FspBI	CTAG	2 cut(s)	621, 724
GsuI	CTGGAG	1 cut(s)	603
HapII	CCGG	2 cut(s)	18, 325
Hin1II	CATG	5 cut(s)	315, 483, 551, 685, 699
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	3 cut(s)	85, 107, 321
HpaII	CCGG	2 cut(s)	18, 325
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	2 cut(s)	457, 519
Hpy188III	TCNNGA	4 cut(s)	72, 124, 269, 306
Hpy8I	GTNNAC	1 cut(s)	9
HpyCH4III	ACNGT	4 cut(s)	52, 226, 374, 407
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	5 cut(s)	80, 504, 579, 681, 699
HpyF10VI	GCNNNNNNNGC	1 cut(s)	240
HpyF3I	CTNAG	4 cut(s)	150, 248, 342, 384
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	5 cut(s)	315, 483, 551, 685, 699
Kzo9I	GATC	2 cut(s)	251, 271
LweI	GCATC	2 cut(s)	133, 491
MabI	ACCWGGT	1 cut(s)	199
MaeI	CTAG	2 cut(s)	621, 724
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	2 cut(s)	226, 407
MalI	GATC	2 cut(s)	253, 273
MboI	GATC	2 cut(s)	251, 271
MboII	GAAGA	1 cut(s)	697
MfeI	CAATTG	1 cut(s)	238
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	6 cut(s)	238, 296, 451, 574, 614, 712
MlyI	GAGTC	1 cut(s)	330
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	4 cut(s)	70, 285, 351, 432
MroXI	GAANNNNTTC	1 cut(s)	565
MseI	TTAA	5 cut(s)	33, 279, 347, 449, 642
MslI	CAYNNNNRTG	1 cut(s)	552
MspCI	CTTAAG	1 cut(s)	278
MspI	CCGG	2 cut(s)	18, 325
MspR9I	CCNGG	4 cut(s)	18, 183, 201, 637
MunI	CAATTG	1 cut(s)	238
MvaI	CCWGG	3 cut(s)	183, 201, 637
MwoI	GCNNNNNNNGC	1 cut(s)	240
NciI	CCSGG	1 cut(s)	18
NcoI	CCATGG	1 cut(s)	311
NdeII	GATC	2 cut(s)	251, 271
NlaIII	CATG	5 cut(s)	315, 483, 551, 685, 699
NlaIV	GGNNCC	1 cut(s)	273
PdmI	GAANNNNTTC	1 cut(s)	565
PfeI	GAWTC	2 cut(s)	85, 107
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
Psp6I	CCWGG	3 cut(s)	181, 199, 635
PspGI	CCWGG	3 cut(s)	181, 199, 635
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	2 cut(s)	57, 308
PsuI	RGATCY	1 cut(s)	271
RsaI	GTAC	3 cut(s)	205, 401, 602
RsaNI	GTAC	3 cut(s)	204, 400, 601
RseI	CAYNNNNRTG	1 cut(s)	552
SaqAI	TTAA	5 cut(s)	33, 279, 347, 449, 642
Sau3AI	GATC	2 cut(s)	251, 271
Sau96I	GGNCC	2 cut(s)	57, 308
ScaI	AGTACT	1 cut(s)	602
SchI	GAGTC	1 cut(s)	330
ScrFI	CCNGG	4 cut(s)	18, 183, 201, 637
SduI	GDGCHC	1 cut(s)	50
SetI	ASST	5 cut(s)	8, 100, 205, 417, 428
SexAI	ACCWGGT	1 cut(s)	199
SfaNI	GCATC	2 cut(s)	133, 491
SfcI	CTRYAG	1 cut(s)	403
SinI	GGWCC	2 cut(s)	57, 308
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	6 cut(s)	238, 296, 451, 574, 614, 712
SspMI	CTAG	2 cut(s)	621, 724
StyD4I	CCNGG	4 cut(s)	16, 181, 199, 635
StyI	CCWWGG	2 cut(s)	311, 660
TaaI	ACNGT	4 cut(s)	52, 226, 374, 407
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	437
TaqII	GACCGA	1 cut(s)	277
TasI	AATT	6 cut(s)	238, 296, 451, 574, 614, 712
TatI	WGTACW	2 cut(s)	399, 600
TfiI	GAWTC	2 cut(s)	85, 107
Tru1I	TTAA	5 cut(s)	33, 279, 347, 449, 642
Tru9I	TTAA	5 cut(s)	33, 279, 347, 449, 642
TscAI	CASTG	2 cut(s)	96, 586
TspDTI	ATGAA	3 cut(s)	408, 668, 698
TspRI	CASTG	2 cut(s)	96, 586
Vha464I	CTTAAG	1 cut(s)	278
VpaK11BI	GGWCC	2 cut(s)	57, 308
XapI	RAATTY	4 cut(s)	296, 451, 614, 712
XmnI	GAANNNNTTC	1 cut(s)	565
XspI	CTAG	2 cut(s)	621, 724
ZrmI	AGTACT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.