Rorug05G0092600

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000484
Physical Location & Seq
Reverse (-)
8155702 .. 8158694
2993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0092600.1

Sequence Viewer

Length: 1143 bp
ATGATCAAATATTTCAGCGAAATACGCTCTGGACTCGGGTCTCTCACAGGGTTCAGCAATGTAAAGCCCAGGCCCATTCTCCCTCTTTCAACACTTAAAACCCAAGCTGGGTTTTTCAAAACCTTAAGTTATCGTTGTGATCCTGCAAAAGGTCTCAAATTGTCTCATACCCTTCAATACAATCCTCGTAGACATTCCTGGTTTTTGTCAAGTATAATGTTTGCGAGTTCTGGAAGCTCCATTTGTTGCCAGTCAGGAATTAATCAGATCAAGCCAACTGAAGCAGCTTTGTCGCACGGGGTTGGCTTCTTTAATTGCAGAACTGCTCTCTTGCTGAAGTCTTCATCATTTCTCTCCGCAAGGAATTCTCTACACTACATTGTTGGTTTAAACACGTTCGATGTAAAGTGCTCCCAGAAGCAAAGTAGACAAACTATAACTGCTTCAAAAGCAATTGAGAAGAAAATAATCAAGAAGGTGGGAAGGAATGAGCACCACTTATGGAAGAAAAAAGACTCAGCTGGGTCTGGACAAAAGGCACTCAACCTTGTTAGAATTGTTTCCGATCTTCCCAATGAGAAAGAGGCTATTTTTGGAGCATTGGATAAATGGACAGCTTGGGAGACAGAGTTCCCACTGATTGCAGCAGCTAAGGCTTTGAGAATTCTAAGGAAGAGGAGACAGTGGATGCGTGTAATTCAAGTGGCAAAGTGGATGCTAAGCAAAGGTCAAGGAGCAACAATGGCAACATATGACACCCTTCTACTGGCATTTGATATGGATCATAGGCTAGATGAGGCTGAATCACTGTGGAACATGATTCTGCATACACATACACGCTCTATCTCAAAGCGGCTATTTTCTAGGATGATCTCTTTGTATGATCATCACGAAATGAAAAATAAGATAATAGAGGTATTCGCAGATATGGAGGAGTTGAGTGTAAGACCAGATGAAGATACTGTCAGGAGAGTGGCACGTGCTTTTCAGGAGCTAGGCCAAGAAGACAAGAGCAAACTTGTTTTGAGAAGATATGGGTGTAAATGGAAGTACATTCACTTCGAGGGTGAAAGGGTTAAAGTGAGAACTAATGCATGGGATGAAGATGACATCGTAACCAATTCAAATGGGAGCACAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

380

Amino Acids

43.42

Weight (kDa)

9.83

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27290 AT4G27290
fragaria_vesca FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g21310 FvH4_3g21310
malus_domestica MD05G1219900.v1.1 MD05G1220200.v1.1 MD05G1230800.v1.1 MD05G1231100.v1.1 MD05G1231700.v1.1 MD05G1232100.v1.1 MD05G1232400.v1.1 MD05G1233000.v1.1 MD10G1202800.v1.1
prunus_persica Prupe.4G139500_v2.0.a1 Prupe.4G139500_v2.0.a1
pyrus_communis pycom05g20170 pycom05g20200 pycom05g20230 pycom05g20250 pycom05g20260 pycom05g20280 pycom05g20320 pycom05g20370 pycom05g20380 pycom05g24850 pycom10g17340
rosa_chinensis RchiOBHm_Chr5g0026351 RchiOBHm_Chr5g0026371 RchiOBHm_Chr5g0026381 RchiOBHm_Chr5g0026411 RchiOBHm_Chr5g0026551 RchiOBHm_Chr5g0036371
rosa_laevigata RLG00000032923 RLG00000032926 RLG00000032927 RLG00000032928 RLG00000032934 RLG00000033692
rosa_multiflora Rmu_co8389779.1_g000001 Rmu_sc0000712.1_g000012 Rmu_sc0001017.1_g000026 Rmu_sc0001114.1_g000001 Rmu_sc0001114.1_g000002 Rmu_sc0001114.1_g000008 Rmu_sc0005581.1_g000006 Rmu_sc0005581.1_g000007 Rmu_sc0006059.1_g000052 Rmu_sc0042966.1_g000001
rosa_roxburghii Rroxscaffold_1G00044440 Rroxscaffold_1G00052930 Rroxscaffold_1G00052980 Rroxscaffold_1G00052990 Rroxscaffold_1G00053000
rosa_rugosa Rorug05G0092500 Rorug05G0092500 Rorug05G0092500 Rorug05G0092600 Rorug05G0092700 Rorug05G0092700 Rorug05G0093700 Rorug05G0155200 Rorug05G0155800 Rorug05G0155800
rosa_samantha Rh5AG185700 Rh5AG186300 Rh5BG182600 Rh5BG182900 Rh5BG183600 Rh5BG249400 Rh5CG202000 Rh5CG202100 Rh5CG202200 Rh5CG203400 Rh5CG281200 Rh5DG184400 Rh5DG184500 Rh5DG185900
rosa_wichuraiana Rw5G016850 Rw5G016870 Rw5G016930 Rw5G022870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 190, 427
AciI CCGC 2 cut(s) 357, 853
AclWI GGATC 2 cut(s) 134, 789
AcsI RAATTY 2 cut(s) 364, 663
AcuI CTGAAG 2 cut(s) 300, 356
AcvI CACGTG 1 cut(s) 980
AfaI GTAC 1 cut(s) 1052
AfiI CCNNNNNNNGG 3 cut(s) 108, 149, 766
AflII CTTAAG 1 cut(s) 124
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 6 cut(s) 90, 118, 176, 447, 701, 1125
AjnI CCWGG 2 cut(s) 68, 197
AloI GAACNNNNNNTCC 2 cut(s) 614, 646
AluBI AGCT 7 cut(s) 107, 237, 287, 521, 617, 650, 994
AluI AGCT 7 cut(s) 107, 237, 287, 521, 617, 650, 994
Alw21I GWGCWC 3 cut(s) 413, 495, 1136
Alw26I GTCTC 5 cut(s) 45, 158, 168, 617, 673
AlwI GGATC 2 cut(s) 134, 789
Ama87I CYCGRG 1 cut(s) 35
AoxI GGCC 2 cut(s) 71, 997
ApeKI GCWGC 3 cut(s) 284, 644, 647
ApoI RAATTY 2 cut(s) 364, 663
AseI ATTAAT 1 cut(s) 261
Asp700I GAANNNNTTC 1 cut(s) 559
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 1079
AvaI CYCGRG 1 cut(s) 35
BarI GAAGNNNNNNTAC 2 cut(s) 1043, 1075
BbrPI CACGTG 1 cut(s) 980
BbsI GAAGAC 2 cut(s) 333, 1011
Bbv12I GWGCWC 3 cut(s) 413, 495, 1136
BbvI GCAGC 3 cut(s) 296, 656, 659
BcgI CGANNNNNNTGC 2 cut(s) 273, 307
BciT130I CCWGG 2 cut(s) 70, 199
BclI TGATCA 2 cut(s) 3, 883
BcoDI GTCTC 5 cut(s) 45, 158, 168, 617, 673
BfaI CTAG 3 cut(s) 791, 864, 995
BfrI CTTAAG 1 cut(s) 124
BisI GCNGC 4 cut(s) 285, 645, 648, 854
BlpI GCTNAGC 1 cut(s) 719
BlsI GCNGC 4 cut(s) 286, 646, 649, 855
Bme1390I CCNGG 2 cut(s) 70, 199
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 72
BmrFI CCNGG 2 cut(s) 70, 199
BmsI GCATC 2 cut(s) 678, 705
BoxI GACNNNNGTC 1 cut(s) 37
BpiI GAAGAC 2 cut(s) 333, 1011
Bpu10I CCTNAGC 1 cut(s) 651
Bpu1102I GCTNAGC 1 cut(s) 719
BsaAI YACGTR 1 cut(s) 980
BsaBI GATNNNNATC 1 cut(s) 780
BsaI GGTCTC 2 cut(s) 45, 158
BsaJI CCNNGG 1 cut(s) 68
BsaXI ACNNNNNCTCC 2 cut(s) 614, 644
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 149, 766
Bse1I ACTGG 2 cut(s) 250, 771
Bse3DI GCAATG 1 cut(s) 64
Bse8I GATNNNNATC 1 cut(s) 780
BseBI CCWGG 2 cut(s) 70, 199
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 4 cut(s) 693, 720, 873, 1105
BseJI GATNNNNATC 1 cut(s) 780
BseLI CCNNNNNNNGG 3 cut(s) 108, 149, 766
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 531
BseNI ACTGG 2 cut(s) 250, 771
BseRI GAGGAG 2 cut(s) 691, 947
BseXI GCAGC 3 cut(s) 296, 656, 659
BseYI CCCAGC 2 cut(s) 107, 521
BshFI GGCC 2 cut(s) 73, 999
BsiHKAI GWGCWC 3 cut(s) 413, 495, 1136
BsiHKCI CYCGRG 1 cut(s) 35
BslI CCNNNNNNNGG 3 cut(s) 108, 149, 766
BsmAI GTCTC 5 cut(s) 45, 158, 168, 617, 673
BsnI GGCC 2 cut(s) 73, 999
Bso31I GGTCTC 2 cut(s) 45, 158
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 3 cut(s) 413, 495, 1136
Bsp143I GATC 7 cut(s) 3, 139, 267, 565, 781, 870, 883
Bsp1720I GCTNAGC 1 cut(s) 719
BspACI CCGC 2 cut(s) 357, 853
BspANI GGCC 2 cut(s) 73, 999
BspCNI CTCAG 1 cut(s) 530
BspPI GGATC 2 cut(s) 134, 789
BspTI CTTAAG 1 cut(s) 124
BspTNI GGTCTC 2 cut(s) 45, 158
BsrDI GCAATG 1 cut(s) 64
BsrI ACTGG 2 cut(s) 250, 771
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 7 cut(s) 3, 139, 267, 565, 781, 870, 883
Bst2UI CCWGG 2 cut(s) 70, 199
Bst4CI ACNGT 3 cut(s) 684, 810, 964
Bst6I CTCTTC 1 cut(s) 668
BstAFI CTTAAG 1 cut(s) 124
BstBAI YACGTR 1 cut(s) 980
BstDEI CTNAG 4 cut(s) 517, 651, 668, 719
BstENI CCTNNNNNAGG 1 cut(s) 147
BstF5I GGATG 4 cut(s) 693, 720, 873, 1105
BstKTI GATC 7 cut(s) 6, 142, 270, 568, 784, 873, 886
BstMAI GTCTC 5 cut(s) 45, 158, 168, 617, 673
BstMBI GATC 7 cut(s) 3, 139, 267, 565, 781, 870, 883
BstMWI GCNNNNNNNGC 4 cut(s) 24, 449, 653, 743
BstNI CCWGG 2 cut(s) 70, 199
BstPAI GACNNNNGTC 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 68, 197
BstV1I GCAGC 3 cut(s) 296, 656, 659
BstV2I GAAGAC 2 cut(s) 333, 1011
BsuRI GGCC 2 cut(s) 73, 999
BtsCI GGATG 4 cut(s) 693, 720, 873, 1105
BtsIMutI CAGTG 3 cut(s) 635, 689, 806
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 1051
CviAII CATG 2 cut(s) 817, 1095
CviQI GTAC 1 cut(s) 1051
DdeI CTNAG 4 cut(s) 517, 651, 668, 719
DpnI GATC 7 cut(s) 5, 141, 269, 567, 783, 872, 885
DpnII GATC 7 cut(s) 3, 139, 267, 565, 781, 870, 883
DraI TTTAAA 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 668
EarI CTCTTC 1 cut(s) 668
Eco31I GGTCTC 2 cut(s) 45, 158
Eco57I CTGAAG 2 cut(s) 300, 356
Eco72I CACGTG 1 cut(s) 980
Eco88I CYCGRG 1 cut(s) 35
EcoNI CCTNNNNNAGG 1 cut(s) 147
EcoRI GAATTC 2 cut(s) 364, 663
EcoRII CCWGG 2 cut(s) 68, 197
EcoT22I ATGCAT 1 cut(s) 1096
FaeI CATG 2 cut(s) 820, 1098
FatI CATG 2 cut(s) 816, 1094
FauNDI CATATG 1 cut(s) 751
FbaI TGATCA 2 cut(s) 3, 883
FblI GTMKAC 2 cut(s) 190, 427
Fnu4HI GCNGC 4 cut(s) 285, 645, 648, 854
FokI GGATG 4 cut(s) 700, 727, 880, 1112
Fsp4HI GCNGC 4 cut(s) 285, 645, 648, 854
FspBI CTAG 3 cut(s) 791, 864, 995
GluI GCNGC 4 cut(s) 285, 645, 648, 854
GsaI CCCAGC 2 cut(s) 111, 525
HaeIII GGCC 2 cut(s) 73, 999
Hin1II CATG 2 cut(s) 820, 1098
HinfI GANTC 4 cut(s) 33, 515, 803, 820
HphI GGTGA 1 cut(s) 1079
Hpy166II GTNNAC 2 cut(s) 191, 428
Hpy188I TCNGA 3 cut(s) 267, 565, 1142
Hpy188III TCNNGA 8 cut(s) 30, 231, 255, 472, 528, 890, 967, 989
Hpy8I GTNNAC 2 cut(s) 191, 428
HpyAV CCTTC 4 cut(s) 182, 469, 477, 770
HpyCH4III ACNGT 3 cut(s) 684, 810, 964
HpyCH4IV ACGT 2 cut(s) 395, 979
HpyCH4V TGCA 5 cut(s) 146, 318, 644, 826, 1094
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 449, 653, 743
HpyF3I CTNAG 4 cut(s) 517, 651, 668, 719
HpySE526I ACGT 2 cut(s) 395, 979
Hsp92II CATG 2 cut(s) 820, 1098
Ksp22I TGATCA 2 cut(s) 3, 883
Kzo9I GATC 7 cut(s) 3, 139, 267, 565, 781, 870, 883
LmnI GCTCC 6 cut(s) 242, 416, 596, 734, 991, 1131
Lsp1109I GCAGC 3 cut(s) 296, 656, 659
LweI GCATC 2 cut(s) 678, 705
MaeI CTAG 3 cut(s) 791, 864, 995
MaeII ACGT 2 cut(s) 395, 979
MaeIII GTNAC 1 cut(s) 1114
MalI GATC 7 cut(s) 5, 141, 269, 567, 783, 872, 885
MboI GATC 7 cut(s) 3, 139, 267, 565, 781, 870, 883
MboII GAAGA 9 cut(s) 333, 472, 517, 560, 685, 968, 1016, 1041, 1115
MfeI CAATTG 1 cut(s) 453
MhlI GDGCHC 3 cut(s) 413, 495, 1136
MluCI AATT 9 cut(s) 158, 258, 313, 364, 453, 555, 663, 696, 1120
MlyI GAGTC 2 cut(s) 27, 509
MnlI CCTC 8 cut(s) 93, 195, 577, 669, 790, 907, 925, 1057
Mph1103I ATGCAT 1 cut(s) 1096
MroXI GAANNNNTTC 1 cut(s) 559
MseI TTAA 6 cut(s) 96, 125, 261, 312, 389, 1077
MspA1I CMGCKG 1 cut(s) 521
MspCI CTTAAG 1 cut(s) 124
MspR9I CCNGG 2 cut(s) 70, 199
MssI GTTTAAAC 1 cut(s) 390
MunI CAATTG 1 cut(s) 453
MvaI CCWGG 2 cut(s) 70, 199
MwoI GCNNNNNNNGC 4 cut(s) 24, 449, 653, 743
NdeI CATATG 1 cut(s) 751
NdeII GATC 7 cut(s) 3, 139, 267, 565, 781, 870, 883
NlaIII CATG 2 cut(s) 820, 1098
NsiI ATGCAT 1 cut(s) 1096
PdmI GAANNNNTTC 1 cut(s) 559
PfeI GAWTC 2 cut(s) 803, 820
PkrI GCNGC 4 cut(s) 286, 646, 649, 855
PleI GAGTC 2 cut(s) 27, 509
PmaCI CACGTG 1 cut(s) 980
PmeI GTTTAAAC 1 cut(s) 390
PmlI CACGTG 1 cut(s) 980
PpsI GAGTC 2 cut(s) 27, 509
Ppu21I YACGTR 1 cut(s) 980
PshAI GACNNNNGTC 1 cut(s) 37
PshBI ATTAAT 1 cut(s) 261
Psp6I CCWGG 2 cut(s) 68, 197
PspCI CACGTG 1 cut(s) 980
PspFI CCCAGC 2 cut(s) 107, 521
PspGI CCWGG 2 cut(s) 68, 197
PspPI GGNCC 1 cut(s) 72
PvuII CAGCTG 1 cut(s) 521
RsaI GTAC 1 cut(s) 1052
RsaNI GTAC 1 cut(s) 1051
SaqAI TTAA 6 cut(s) 96, 125, 261, 312, 389, 1077
SatI GCNGC 4 cut(s) 285, 645, 648, 854
Sau3AI GATC 7 cut(s) 3, 139, 267, 565, 781, 870, 883
Sau96I GGNCC 1 cut(s) 72
SchI GAGTC 2 cut(s) 27, 509
ScrFI CCNGG 2 cut(s) 70, 199
SduI GDGCHC 3 cut(s) 413, 495, 1136
SfaNI GCATC 2 cut(s) 678, 705
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 9 cut(s) 158, 258, 313, 364, 453, 555, 663, 696, 1120
SsiI CCGC 2 cut(s) 357, 853
SspI AATATT 1 cut(s) 11
SspMI CTAG 3 cut(s) 791, 864, 995
StyD4I CCNGG 2 cut(s) 68, 197
TaaI ACNGT 3 cut(s) 684, 810, 964
TaiI ACGT 2 cut(s) 398, 982
TaqI TCGA 2 cut(s) 399, 1062
TasI AATT 9 cut(s) 158, 258, 313, 364, 453, 555, 663, 696, 1120
TatI WGTACW 1 cut(s) 1050
TauI GCSGC 1 cut(s) 856
TfiI GAWTC 2 cut(s) 803, 820
Tru1I TTAA 6 cut(s) 96, 125, 261, 312, 389, 1077
Tru9I TTAA 6 cut(s) 96, 125, 261, 312, 389, 1077
TscAI CASTG 3 cut(s) 642, 689, 813
TseI GCWGC 3 cut(s) 284, 644, 647
TspDTI ATGAA 4 cut(s) 333, 911, 969, 1116
TspRI CASTG 3 cut(s) 642, 689, 813
Vha464I CTTAAG 1 cut(s) 124
VspI ATTAAT 1 cut(s) 261
XagI CCTNNNNNAGG 1 cut(s) 147
XapI RAATTY 2 cut(s) 364, 663
XmiI GTMKAC 2 cut(s) 190, 427
XmnI GAANNNNTTC 1 cut(s) 559
XspI CTAG 3 cut(s) 791, 864, 995
Zsp2I ATGCAT 1 cut(s) 1096
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.