Rmu_sc0001017.1_g000026

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001017.1
OG0000484
Physical Location & Seq
Forward (+)
117333 .. 118502
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001017.1_g000026.1.cds

Sequence Viewer

Length: 1170 bp
atgaggtattcgagtattacagtcatgaaaaatccattgaaggttttaattaggatgtgctttcatcctatttgctcttttctgctcatcattacagcgatattttccacagtgggaggcagcacaagtacatttcagtccgttagagatggccagactatagtttcaactactggaaactttgagcttggattttttagtcctgctactggttctaataaccgataccttgggatatggtacaagaagatatcggctaccatagtgtgggttgccaacagagaagcaccccttactgattcatcaggtgttctgcaggtcaccgaccctggaattcttgtccttctcaaccataacaagagcatagtttggtcctcaaacacatcaagatctgcagagaatccagtggcccagcttttggattcaggaaatcttgttgtaacagacggcagtgatacagaccctgagaacttcttgtggcaaagttttgactacccaagtgatacactcctaccaggtatgaagcttggttggaacaaagttactggcttcagtaggcatcttacctcatggaacagtccacaggatccttctctaggaaaatatacatatgaacttgatcgcagaggatatggagaagaaattttgaagaaggattcagttatgatatggcgaactggaccatggaatggaatccgattcagtggcacgcctcatttaactccaaactccatattcacatacaatcttgtttttgatgatcatgatgaagaatattatatttttgagcttcttaacagctcagtttattcaagagtgatcctcactccagatgggcgtgtgcagcgctacacatggattgatacaacccaaacttggggatttctttatcaaacagctttaattgataactgcgacagttatgcattctgtggtccaaatggtgcatgcagtattgacagttccccagtatgtcgctgcttgaatggatttcaacccaaaaatccaaaggactgggatgtagtggattggtcaaatggctgtgtgagaaggactccactaaattcagtaaattgcagcggtgacttgtttgagaagtactctgcagtgaaattgccaaacaccgccctaatggaagggccgggccgggcgggtttagggcgggcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

389

Amino Acids

43.39

Weight (kDa)

5.99

Isoelectric Point (pI)

30.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27290 AT4G27290
fragaria_vesca FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g21310 FvH4_3g21310
malus_domestica MD05G1219900.v1.1 MD05G1220200.v1.1 MD05G1230800.v1.1 MD05G1231100.v1.1 MD05G1231700.v1.1 MD05G1232100.v1.1 MD05G1232400.v1.1 MD05G1233000.v1.1 MD10G1202800.v1.1
prunus_persica Prupe.4G139500_v2.0.a1 Prupe.4G139500_v2.0.a1
pyrus_communis pycom05g20170 pycom05g20200 pycom05g20230 pycom05g20250 pycom05g20260 pycom05g20280 pycom05g20320 pycom05g20370 pycom05g20380 pycom05g24850 pycom10g17340
rosa_chinensis RchiOBHm_Chr5g0026351 RchiOBHm_Chr5g0026371 RchiOBHm_Chr5g0026381 RchiOBHm_Chr5g0026411 RchiOBHm_Chr5g0026551 RchiOBHm_Chr5g0036371
rosa_laevigata RLG00000032923 RLG00000032926 RLG00000032927 RLG00000032928 RLG00000032934 RLG00000033692
rosa_multiflora Rmu_co8389779.1_g000001 Rmu_sc0000712.1_g000012 Rmu_sc0001017.1_g000026 Rmu_sc0001114.1_g000001 Rmu_sc0001114.1_g000002 Rmu_sc0001114.1_g000008 Rmu_sc0005581.1_g000006 Rmu_sc0005581.1_g000007 Rmu_sc0006059.1_g000052 Rmu_sc0042966.1_g000001
rosa_roxburghii Rroxscaffold_1G00044440 Rroxscaffold_1G00052930 Rroxscaffold_1G00052980 Rroxscaffold_1G00052990 Rroxscaffold_1G00053000
rosa_rugosa Rorug05G0092500 Rorug05G0092500 Rorug05G0092500 Rorug05G0092600 Rorug05G0092700 Rorug05G0092700 Rorug05G0093700 Rorug05G0155200 Rorug05G0155800 Rorug05G0155800
rosa_samantha Rh5AG185700 Rh5AG186300 Rh5BG182600 Rh5BG182900 Rh5BG183600 Rh5BG249400 Rh5CG202000 Rh5CG202100 Rh5CG202200 Rh5CG203400 Rh5CG281200 Rh5DG184400 Rh5DG184500 Rh5DG185900
rosa_wichuraiana Rw5G016850 Rw5G016870 Rw5G016930 Rw5G022870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 307
AccB7I CCANNNNNTGG 3 cut(s) 267, 418, 689
AciI CCGC 4 cut(s) 1080, 1125, 1151, 1162
AclWI GGATC 3 cut(s) 581, 594, 814
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 3 cut(s) 333, 642, 1063
AcuI CTGAAG 1 cut(s) 535
AfaI GTAC 3 cut(s) 130, 242, 1100
AfeI AGCGCT 1 cut(s) 848
AfiI CCNNNNNNNGG 7 cut(s) 209, 267, 418, 596, 689, 876, 877
AgsI TTSAA 6 cut(s) 40, 168, 649, 813, 985, 995
AjnI CCWGG 2 cut(s) 328, 514
AluBI AGCT 6 cut(s) 187, 415, 526, 790, 801, 899
AluI AGCT 6 cut(s) 187, 415, 526, 790, 801, 899
AlwI GGATC 3 cut(s) 581, 594, 814
AlwNI CAGNNNCTG 1 cut(s) 464
Aor51HI AGCGCT 1 cut(s) 848
AoxI GGCC 4 cut(s) 151, 408, 1139, 1144
ApeKI GCWGC 4 cut(s) 120, 844, 978, 1077
ApoI RAATTY 3 cut(s) 333, 642, 1063
AspLEI GCGC 1 cut(s) 849
AspS9I GGNCC 6 cut(s) 372, 409, 680, 935, 1139, 1144
AsuC2I CCSGG 2 cut(s) 1143, 1148
AsuHPI GGTGA 2 cut(s) 313, 1094
AvaII GGWCC 3 cut(s) 372, 680, 935
BalI TGGCCA 1 cut(s) 153
BamHI GGATCC 1 cut(s) 586
BbvI GCAGC 4 cut(s) 132, 856, 965, 1089
BccI CCATC 2 cut(s) 143, 827
BceAI ACGGC 1 cut(s) 463
BcgI CGANNNNNNTGC 2 cut(s) 905, 939
BciT130I CCWGG 2 cut(s) 330, 516
BclI TGATCA 1 cut(s) 760
BcnI CCSGG 2 cut(s) 1143, 1148
BfaI CTAG 1 cut(s) 596
BfmI CTRYAG 4 cut(s) 159, 314, 393, 1104
BfoI RGCGCY 1 cut(s) 850
BfuAI ACCTGC 1 cut(s) 307
BglII AGATCT 1 cut(s) 389
BisI GCNGC 4 cut(s) 121, 845, 979, 1078
BlsI GCNGC 4 cut(s) 122, 846, 980, 1079
BmcAI AGTACT 1 cut(s) 1100
Bme1390I CCNGG 4 cut(s) 330, 516, 1143, 1148
Bme18I GGWCC 3 cut(s) 372, 680, 935
BmgT120I GGNCC 6 cut(s) 372, 409, 680, 935, 1139, 1144
BmiI GGNNCC 1 cut(s) 588
BmrFI CCNGG 4 cut(s) 330, 516, 1143, 1148
BmrI ACTGGG 2 cut(s) 962, 1024
BmsI GCATC 1 cut(s) 568
BmuI ACTGGG 2 cut(s) 962, 1024
BplI GAGNNNNNCTC 6 cut(s) 807, 839, 1039, 1071, 1085, 1117
BpmI CTGGAG 1 cut(s) 813
BpuMI CCSGG 2 cut(s) 1143, 1148
BsaJI CCNNGG 3 cut(s) 229, 328, 683
Bsc4I CCNNNNNNNGG 7 cut(s) 209, 267, 418, 596, 689, 876, 877
Bse1I ACTGG 7 cut(s) 178, 214, 404, 550, 682, 968, 1019
BseBI CCWGG 2 cut(s) 330, 516
BseDI CCNNGG 3 cut(s) 229, 328, 683
BseGI GGATG 3 cut(s) 60, 64, 1024
BseLI CCNNNNNNNGG 7 cut(s) 209, 267, 418, 596, 689, 876, 877
BseMII CTCAG 2 cut(s) 456, 816
BseNI ACTGG 7 cut(s) 178, 214, 404, 550, 682, 968, 1019
BseXI GCAGC 4 cut(s) 132, 856, 965, 1089
BseYI CCCAGC 1 cut(s) 411
BsgI GTGCAG 1 cut(s) 863
BshFI GGCC 4 cut(s) 153, 410, 1141, 1146
BsiSI CCGG 2 cut(s) 1142, 1147
BslI CCNNNNNNNGG 7 cut(s) 209, 267, 418, 596, 689, 876, 877
BsmI GAATGC 1 cut(s) 926
BsnI GGCC 4 cut(s) 153, 410, 1141, 1146
Bsp143I GATC 5 cut(s) 389, 586, 619, 760, 819
Bsp19I CCATGG 1 cut(s) 683
BspACI CCGC 4 cut(s) 1080, 1125, 1151, 1162
BspANI GGCC 4 cut(s) 153, 410, 1141, 1146
BspCNI CTCAG 2 cut(s) 457, 815
BspHI TCATGA 2 cut(s) 24, 763
BspLI GGNNCC 1 cut(s) 588
BspMAI CTGCAG 3 cut(s) 318, 397, 1108
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 3 cut(s) 581, 594, 814
BsrI ACTGG 7 cut(s) 178, 214, 404, 550, 682, 968, 1019
BssECI CCNNGG 3 cut(s) 229, 328, 683
BssMI GATC 5 cut(s) 389, 586, 619, 760, 819
BssT1I CCWWGG 2 cut(s) 229, 683
Bst2UI CCWGG 2 cut(s) 330, 516
Bst4CI ACNGT 5 cut(s) 22, 112, 578, 920, 962
BstC8I GCNNGC 3 cut(s) 710, 949, 1164
BstDEI CTNAG 3 cut(s) 465, 802, 1167
BstDSI CCRYGG 1 cut(s) 683
BstEII GGTNACC 1 cut(s) 319
BstENI CCTNNNNNAGG 1 cut(s) 594
BstF5I GGATG 3 cut(s) 60, 64, 1024
BstH2I RGCGCY 1 cut(s) 850
BstHHI GCGC 1 cut(s) 849
BstKTI GATC 5 cut(s) 392, 589, 622, 763, 822
BstMBI GATC 5 cut(s) 389, 586, 619, 760, 819
BstMWI GCNNNNNNNGC 1 cut(s) 844
BstNI CCWGG 2 cut(s) 330, 516
BstNSI RCATGY 1 cut(s) 951
BstPI GGTNACC 1 cut(s) 319
BstSCI CCNGG 4 cut(s) 328, 514, 1141, 1146
BstSFI CTRYAG 4 cut(s) 159, 314, 393, 1104
BstV1I GCAGC 4 cut(s) 132, 856, 965, 1089
BstX2I RGATCY 2 cut(s) 389, 586
BstXI CCANNNNNNTGG 1 cut(s) 1014
BstYI RGATCY 2 cut(s) 389, 586
BsuRI GGCC 4 cut(s) 153, 410, 1141, 1146
BtgI CCRYGG 1 cut(s) 683
BtsCI GGATG 3 cut(s) 60, 64, 1024
BtsI GCAGTG 2 cut(s) 457, 1113
BtsIMutI CAGTG 5 cut(s) 117, 411, 457, 709, 1113
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 3 cut(s) 710, 949, 1164
CaiI CAGNNNCTG 1 cut(s) 464
CciI TCATGA 2 cut(s) 24, 763
CfoI GCGC 1 cut(s) 849
Cfr13I GGNCC 6 cut(s) 372, 409, 680, 935, 1139, 1144
CsiI ACCWGGT 1 cut(s) 514
Csp6I GTAC 3 cut(s) 129, 241, 1099
CviAII CATG 6 cut(s) 25, 570, 684, 764, 855, 948
CviQI GTAC 3 cut(s) 129, 241, 1099
DdeI CTNAG 3 cut(s) 465, 802, 1167
DpnI GATC 5 cut(s) 391, 588, 621, 762, 821
DpnII GATC 5 cut(s) 389, 586, 619, 760, 819
EaeI YGGCCR 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 229, 683
Eco32I GATATC 1 cut(s) 252
Eco47I GGWCC 3 cut(s) 372, 680, 935
Eco47III AGCGCT 1 cut(s) 848
Eco57I CTGAAG 1 cut(s) 535
Eco91I GGTNACC 1 cut(s) 319
EcoNI CCTNNNNNAGG 1 cut(s) 594
EcoO65I GGTNACC 1 cut(s) 319
EcoRI GAATTC 1 cut(s) 333
EcoRII CCWGG 2 cut(s) 328, 514
EcoRV GATATC 1 cut(s) 252
EcoT14I CCWWGG 2 cut(s) 229, 683
EcoT22I ATGCAT 1 cut(s) 928
ErhI CCWWGG 2 cut(s) 229, 683
FaeI CATG 6 cut(s) 28, 573, 687, 767, 858, 951
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FatI CATG 6 cut(s) 24, 569, 683, 763, 854, 947
FauI CCCGC 2 cut(s) 1144, 1155
FauNDI CATATG 1 cut(s) 610
FbaI TGATCA 1 cut(s) 760
Fnu4HI GCNGC 4 cut(s) 121, 845, 979, 1078
FokI GGATG 3 cut(s) 51, 67, 1031
Fsp4HI GCNGC 4 cut(s) 121, 845, 979, 1078
FspBI CTAG 1 cut(s) 596
GlaI GCGC 1 cut(s) 848
GluI GCNGC 4 cut(s) 121, 845, 979, 1078
GsaI CCCAGC 1 cut(s) 415
GsuI CTGGAG 1 cut(s) 813
HaeII RGCGCY 1 cut(s) 850
HaeIII GGCC 4 cut(s) 153, 410, 1141, 1146
HapII CCGG 2 cut(s) 1142, 1147
HhaI GCGC 1 cut(s) 849
Hin1II CATG 6 cut(s) 28, 573, 687, 767, 858, 951
Hin6I GCGC 1 cut(s) 847
HinP1I GCGC 1 cut(s) 847
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 7 cut(s) 299, 400, 422, 656, 693, 699, 1054
HpaII CCGG 2 cut(s) 1142, 1147
HphI GGTGA 2 cut(s) 313, 1094
Hpy166II GTNNAC 1 cut(s) 581
Hpy188I TCNGA 1 cut(s) 698
Hpy188III TCNNGA 6 cut(s) 25, 387, 426, 764, 813, 830
Hpy8I GTNNAC 1 cut(s) 581
HpyAV CCTTC 6 cut(s) 34, 353, 600, 646, 1044, 1130
HpyCH4III ACNGT 5 cut(s) 22, 112, 578, 920, 962
HpyCH4V TGCA 8 cut(s) 316, 395, 844, 926, 947, 951, 1077, 1106
HpyF10VI GCNNNNNNNGC 1 cut(s) 844
HpyF3I CTNAG 3 cut(s) 465, 802, 1167
Hsp92II CATG 6 cut(s) 28, 573, 687, 767, 858, 951
HspAI GCGC 1 cut(s) 847
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 5 cut(s) 389, 586, 619, 760, 819
Lsp1109I GCAGC 4 cut(s) 132, 856, 965, 1089
LweI GCATC 1 cut(s) 568
MabI ACCWGGT 1 cut(s) 514
MaeI CTAG 1 cut(s) 596
MaeIII GTNAC 4 cut(s) 319, 439, 541, 1082
MalI GATC 5 cut(s) 391, 588, 621, 762, 821
MboI GATC 5 cut(s) 389, 586, 619, 760, 819
MboII GAAGA 4 cut(s) 259, 650, 661, 782
MflI RGATCY 2 cut(s) 389, 586
MlsI TGGCCA 1 cut(s) 153
MluCI AATT 7 cut(s) 48, 333, 642, 903, 1063, 1072, 1112
MluNI TGGCCA 1 cut(s) 153
MlyI GAGTC 1 cut(s) 1048
MmeI TCCRAC 1 cut(s) 512
MnlI CCTC 6 cut(s) 110, 385, 577, 620, 723, 833
Mox20I TGGCCA 1 cut(s) 153
Mph1103I ATGCAT 1 cut(s) 928
MscI TGGCCA 1 cut(s) 153
MseI TTAA 4 cut(s) 47, 719, 795, 902
Msp20I TGGCCA 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 1080
MspI CCGG 2 cut(s) 1142, 1147
MspR9I CCNGG 4 cut(s) 330, 516, 1143, 1148
Mva1269I GAATGC 1 cut(s) 926
MvaI CCWGG 2 cut(s) 330, 516
MwoI GCNNNNNNNGC 1 cut(s) 844
NciI CCSGG 2 cut(s) 1143, 1148
NcoI CCATGG 1 cut(s) 683
NdeI CATATG 1 cut(s) 610
NdeII GATC 5 cut(s) 389, 586, 619, 760, 819
NlaIII CATG 6 cut(s) 28, 573, 687, 767, 858, 951
NlaIV GGNNCC 1 cut(s) 588
NmuCI GTSAC 2 cut(s) 319, 1082
NsiI ATGCAT 1 cut(s) 928
NspI RCATGY 1 cut(s) 951
PaeI GCATGC 1 cut(s) 951
PagI TCATGA 2 cut(s) 24, 763
PctI GAATGC 1 cut(s) 926
PfeI GAWTC 6 cut(s) 299, 400, 422, 656, 693, 699
PflMI CCANNNNNTGG 3 cut(s) 267, 418, 689
PkrI GCNGC 4 cut(s) 122, 846, 980, 1079
PleI GAGTC 1 cut(s) 1048
PpsI GAGTC 1 cut(s) 1048
Psp6I CCWGG 2 cut(s) 328, 514
PspEI GGTNACC 1 cut(s) 319
PspFI CCCAGC 1 cut(s) 411
PspGI CCWGG 2 cut(s) 328, 514
PspN4I GGNNCC 1 cut(s) 588
PspPI GGNCC 6 cut(s) 372, 409, 680, 935, 1139, 1144
PsrI GAACNNNNNNTAC 2 cut(s) 946, 978
PstI CTGCAG 3 cut(s) 318, 397, 1108
PstNI CAGNNNCTG 1 cut(s) 464
PsuI RGATCY 2 cut(s) 389, 586
RsaI GTAC 3 cut(s) 130, 242, 1100
RsaNI GTAC 3 cut(s) 129, 241, 1099
SaqAI TTAA 4 cut(s) 47, 719, 795, 902
SatI GCNGC 4 cut(s) 121, 845, 979, 1078
Sau3AI GATC 5 cut(s) 389, 586, 619, 760, 819
Sau96I GGNCC 6 cut(s) 372, 409, 680, 935, 1139, 1144
ScaI AGTACT 1 cut(s) 1100
SchI GAGTC 1 cut(s) 1048
ScrFI CCNGG 4 cut(s) 330, 516, 1143, 1148
SexAI ACCWGGT 1 cut(s) 514
SfaNI GCATC 1 cut(s) 568
SfcI CTRYAG 4 cut(s) 159, 314, 393, 1104
SinI GGWCC 3 cut(s) 372, 680, 935
SphI GCATGC 1 cut(s) 951
Sse9I AATT 7 cut(s) 48, 333, 642, 903, 1063, 1072, 1112
SsiI CCGC 4 cut(s) 1080, 1125, 1151, 1162
SspI AATATT 1 cut(s) 776
SspMI CTAG 1 cut(s) 596
StyD4I CCNGG 4 cut(s) 328, 514, 1141, 1146
StyI CCWWGG 2 cut(s) 229, 683
TaaI ACNGT 5 cut(s) 22, 112, 578, 920, 962
TaqI TCGA 1 cut(s) 11
TasI AATT 7 cut(s) 48, 333, 642, 903, 1063, 1072, 1112
TatI WGTACW 2 cut(s) 128, 1098
TfiI GAWTC 6 cut(s) 299, 400, 422, 656, 693, 699
Tru1I TTAA 4 cut(s) 47, 719, 795, 902
Tru9I TTAA 4 cut(s) 47, 719, 795, 902
TscAI CASTG 5 cut(s) 117, 411, 457, 709, 1113
TseFI GTSAC 2 cut(s) 319, 1082
TseI GCWGC 4 cut(s) 120, 844, 978, 1077
Tsp45I GTSAC 2 cut(s) 319, 1082
TspDTI ATGAA 6 cut(s) 41, 53, 291, 536, 627, 783
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 5 cut(s) 117, 411, 457, 709, 1113
Van91I CCANNNNNTGG 3 cut(s) 267, 418, 689
VpaK11BI GGWCC 3 cut(s) 372, 680, 935
XagI CCTNNNNNAGG 1 cut(s) 594
XapI RAATTY 3 cut(s) 333, 642, 1063
XceI RCATGY 1 cut(s) 951
XspI CTAG 1 cut(s) 596
ZrmI AGTACT 1 cut(s) 1100
Zsp2I ATGCAT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.