Rh5CG203400

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
20506848 .. 20508008
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG203400.1

Sequence Viewer

Length: 1161 bp
ATGGTTTCCATTGCAGATGACACATACACAAGTACCTTTCAGTCCCTCAGAGATGGCCAGACCCATGTTTCAACTGGTGGAACCTTTGAGCTTGGATTTTTCACTCCTGAAGGTGCTTCTAATAAGCGATATGTTGGAATATGGTACAAGAATATACCCGTTAACACTGTTGTATGGGTTGCCAACAGAGGCACACCCCTCACTGACTCATCAGGTGTTCTGAAGATCACCAGTCCTGGAATTCTTGTCCTTGTCGACCATAACAAGACAGTTTGGTCCTCCAACACTTCAAGTCCAGCACAGAATCCAGTAGCACAGCTTTTGGATTCAGGAAATCTTGTTGTGATAGATAAGAGTGATAATGTTGACCCATCTGCAGAGAGCTTTCTGTGGCAAAGTTTTGACTACCCAGGTAACACATTGCTACCAGGTATGAAACTTGGTAGAAACACAATTACAGGTTTCAAATGGTTTATGTCATCATGGAAAAGTCCCCAGGATCCTTCCCAAGGCAACTATACATTTCAAAATGGTCCCAAAGGATATGCAGAGCAGATTATGATGGAGGGTTCGGTCATGAAATTTCGGACTGGACCATGGAATGGAATCCGCTTCAGTGGAGCGCCTCATTTAAGTCCAAATCCAATATACATATACAATCTTCTTTTTGATCATGATGAAGAATATTATTCTTATAAGCTTCTTAACAGGTCAATTCTTTCCAGGCTGGTGTTGGCTCAAGATGGGCTTGTGCACCGATACACATGGATTGATAGAACCCGAGAATGGTTCCTTCATCTAACAGCACAACTTGATAGCTGTGATACCTATACACTTTGTGGTGCATATGGTGTATGTAATATTGAGAACTCCCCAGCATGTGGGTGCTTGAAAGGATTTTCACCTAAATATCAGAAAGATTGGGAAGTGATGGATTGGTCAAATGGTTGTGTCAGAAAGACTCCACTGAGTTGCAATGGAGACATATTTCAGAAGTACTATGGGGTGAAATTGCCAAACACAGAACAATCCTGGTTCAACACAAGTATGAACATCAAGGAATGTGAAATGATGTGCACAAAGAACTGTTCCTGCACAGCTTATTCAAATTGTATATCAGTCAAGGAGGGACTGGGTGCCGGATGTGGTTTGGTGACCTGA

Protein Analysis

386

Amino Acids

43.11

Weight (kDa)

6.31

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 56 - 163 1.9e-36 D-mannose binding lectin
S_locus_glycop PF00954 195 - 303 1.5e-31 S-locus glycoprotein domain
PAN_2 PF08276 325 - 382 9e-12 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27290 AT4G27290
fragaria_vesca FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g21310 FvH4_3g21310
malus_domestica MD05G1219900.v1.1 MD05G1220200.v1.1 MD05G1230800.v1.1 MD05G1231100.v1.1 MD05G1231700.v1.1 MD05G1232100.v1.1 MD05G1232400.v1.1 MD05G1233000.v1.1 MD10G1202800.v1.1
prunus_persica Prupe.4G139500_v2.0.a1 Prupe.4G139500_v2.0.a1
pyrus_communis pycom05g20170 pycom05g20200 pycom05g20230 pycom05g20250 pycom05g20260 pycom05g20280 pycom05g20320 pycom05g20370 pycom05g20380 pycom05g24850 pycom10g17340
rosa_chinensis RchiOBHm_Chr5g0026351 RchiOBHm_Chr5g0026371 RchiOBHm_Chr5g0026381 RchiOBHm_Chr5g0026411 RchiOBHm_Chr5g0026551 RchiOBHm_Chr5g0036371
rosa_laevigata RLG00000032923 RLG00000032926 RLG00000032927 RLG00000032928 RLG00000032934 RLG00000033692
rosa_multiflora Rmu_co8389779.1_g000001 Rmu_sc0000712.1_g000012 Rmu_sc0001017.1_g000026 Rmu_sc0001114.1_g000001 Rmu_sc0001114.1_g000002 Rmu_sc0001114.1_g000008 Rmu_sc0005581.1_g000006 Rmu_sc0005581.1_g000007 Rmu_sc0006059.1_g000052 Rmu_sc0042966.1_g000001
rosa_roxburghii Rroxscaffold_1G00044440 Rroxscaffold_1G00052930 Rroxscaffold_1G00052980 Rroxscaffold_1G00052990 Rroxscaffold_1G00053000
rosa_rugosa Rorug05G0092500 Rorug05G0092500 Rorug05G0092500 Rorug05G0092600 Rorug05G0092700 Rorug05G0092700 Rorug05G0093700 Rorug05G0155200 Rorug05G0155800 Rorug05G0155800
rosa_samantha Rh5AG185700 Rh5AG186300 Rh5BG182600 Rh5BG182900 Rh5BG183600 Rh5BG249400 Rh5CG202000 Rh5CG202100 Rh5CG202200 Rh5CG203400 Rh5CG281200 Rh5DG184400 Rh5DG184500 Rh5DG185900
rosa_wichuraiana Rw5G016850 Rw5G016870 Rw5G016930 Rw5G022870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 696
AasI GACNNNNNNGTC 1 cut(s) 274
AccB1I GGYRCC 1 cut(s) 1136
AccB7I CCANNNNNTGG 2 cut(s) 602, 881
AccI GTMKAC 1 cut(s) 255
AciI CCGC 1 cut(s) 610
AclWI GGATC 2 cut(s) 494, 507
AcoI YGGCCR 1 cut(s) 55
AcsI RAATTY 2 cut(s) 240, 581
AcuI CTGAAG 3 cut(s) 129, 242, 598
AdeI CACNNNGTG 1 cut(s) 839
AfaI GTAC 3 cut(s) 34, 146, 998
AfiI CCNNNNNNNGG 4 cut(s) 509, 602, 786, 881
AgsI TTSAA 7 cut(s) 72, 291, 466, 527, 892, 1039, 1107
AjnI CCWGG 6 cut(s) 235, 409, 427, 495, 722, 1031
AluBI AGCT 6 cut(s) 91, 319, 384, 700, 819, 1100
AluI AGCT 6 cut(s) 91, 319, 384, 700, 819, 1100
Alw21I GWGCWC 2 cut(s) 756, 1079
Alw26I GTCTC 1 cut(s) 975
Alw44I GTGCAC 2 cut(s) 752, 1075
AlwI GGATC 2 cut(s) 494, 507
Ama87I CYCGRG 1 cut(s) 780
AoxI GGCC 1 cut(s) 55
ApaLI GTGCAC 2 cut(s) 752, 1075
ApoI RAATTY 2 cut(s) 240, 581
AspLEI GCGC 1 cut(s) 625
AspS9I GGNCC 3 cut(s) 276, 533, 593
AsuHPI GGTGA 3 cut(s) 220, 894, 1018
AvaI CYCGRG 1 cut(s) 780
AvaII GGWCC 3 cut(s) 276, 533, 593
BaeGI GKGCMC 2 cut(s) 756, 1079
BaeI ACNNNNGTAYC 2 cut(s) 16, 49
BalI TGGCCA 1 cut(s) 57
BamHI GGATCC 1 cut(s) 499
BanI GGYRCC 1 cut(s) 1136
Bbv12I GWGCWC 2 cut(s) 756, 1079
BccI CCATC 5 cut(s) 47, 379, 556, 737, 925
BciT130I CCWGG 6 cut(s) 237, 411, 429, 497, 724, 1033
BclI TGATCA 1 cut(s) 670
BcoDI GTCTC 1 cut(s) 975
BfmI CTRYAG 1 cut(s) 375
BfoI RGCGCY 1 cut(s) 626
BmcAI AGTACT 1 cut(s) 998
Bme1390I CCNGG 6 cut(s) 237, 411, 429, 497, 724, 1033
Bme18I GGWCC 3 cut(s) 276, 533, 593
BmeT110I CYCGRG 1 cut(s) 780
BmgT120I GGNCC 3 cut(s) 276, 533, 593
BmiI GGNNCC 5 cut(s) 82, 501, 535, 791, 1138
BmrFI CCNGG 6 cut(s) 237, 411, 429, 497, 724, 1033
BmrI ACTGGG 1 cut(s) 1142
BmuI ACTGGG 1 cut(s) 1142
BpuEI CTTGAG 1 cut(s) 723
BsaJI CCNNGG 4 cut(s) 409, 495, 508, 596
Bsc4I CCNNNNNNNGG 4 cut(s) 509, 602, 786, 881
Bse1I ACTGG 5 cut(s) 79, 231, 308, 595, 1137
Bse3DI GCAATG 3 cut(s) 9, 419, 982
BseBI CCWGG 6 cut(s) 237, 411, 429, 497, 724, 1033
BseDI CCNNGG 4 cut(s) 409, 495, 508, 596
BseGI GGATG 1 cut(s) 1148
BseLI CCNNNNNNNGG 4 cut(s) 509, 602, 786, 881
BseMI GCAATG 3 cut(s) 9, 419, 982
BseMII CTCAG 2 cut(s) 61, 959
BseNI ACTGG 5 cut(s) 79, 231, 308, 595, 1137
BseSI GKGCMC 2 cut(s) 756, 1079
BseYI CCCAGC 1 cut(s) 874
BsgI GTGCAG 1 cut(s) 1078
BshFI GGCC 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 1136
BsiHKAI GWGCWC 2 cut(s) 756, 1079
BsiHKCI CYCGRG 1 cut(s) 780
BsiSI CCGG 1 cut(s) 1140
BslFI GGGAC 4 cut(s) 28, 477, 519, 1143
BslI CCNNNNNNNGG 4 cut(s) 509, 602, 786, 881
BsmAI GTCTC 1 cut(s) 975
BsmFI GGGAC 4 cut(s) 28, 477, 519, 1143
BsnI GGCC 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 780
Bsp1286I GDGCHC 2 cut(s) 756, 1079
Bsp143I GATC 3 cut(s) 225, 499, 670
Bsp19I CCATGG 1 cut(s) 596
BspACI CCGC 1 cut(s) 610
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 2 cut(s) 60, 960
BspHI TCATGA 2 cut(s) 576, 673
BspLI GGNNCC 5 cut(s) 82, 501, 535, 791, 1138
BspMAI CTGCAG 1 cut(s) 379
BspPI GGATC 2 cut(s) 494, 507
BspT107I GGYRCC 1 cut(s) 1136
BsrDI GCAATG 3 cut(s) 9, 419, 982
BsrI ACTGG 5 cut(s) 79, 231, 308, 595, 1137
BssECI CCNNGG 4 cut(s) 409, 495, 508, 596
BssMI GATC 3 cut(s) 225, 499, 670
BssT1I CCWWGG 2 cut(s) 508, 596
Bst2UI CCWGG 6 cut(s) 237, 411, 429, 497, 724, 1033
Bst4CI ACNGT 3 cut(s) 169, 271, 1088
BstDEI CTNAG 2 cut(s) 47, 968
BstDSI CCRYGG 1 cut(s) 596
BstEII GGTNACC 1 cut(s) 1153
BstENI CCTNNNNNAGG 1 cut(s) 507
BstF5I GGATG 1 cut(s) 1148
BstH2I RGCGCY 1 cut(s) 626
BstHHI GCGC 1 cut(s) 625
BstKTI GATC 3 cut(s) 228, 502, 673
BstMAI GTCTC 1 cut(s) 975
BstMBI GATC 3 cut(s) 225, 499, 670
BstNI CCWGG 6 cut(s) 237, 411, 429, 497, 724, 1033
BstNSI RCATGY 1 cut(s) 882
BstPI GGTNACC 1 cut(s) 1153
BstSCI CCNGG 6 cut(s) 235, 409, 427, 495, 722, 1031
BstSFI CTRYAG 1 cut(s) 375
BstSLI GKGCMC 2 cut(s) 756, 1079
BstX2I RGATCY 1 cut(s) 499
BstYI RGATCY 1 cut(s) 499
BsuRI GGCC 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 596
BtsCI GGATG 1 cut(s) 1148
BtsIMutI CAGTG 4 cut(s) 165, 201, 622, 965
CciI TCATGA 2 cut(s) 576, 673
CfoI GCGC 1 cut(s) 625
Cfr13I GGNCC 3 cut(s) 276, 533, 593
CsiI ACCWGGT 1 cut(s) 427
Csp6I GTAC 3 cut(s) 33, 145, 997
CviAII CATG 7 cut(s) 65, 483, 577, 597, 674, 765, 879
CviQI GTAC 3 cut(s) 33, 145, 997
DdeI CTNAG 2 cut(s) 47, 968
DpnI GATC 3 cut(s) 227, 501, 672
DpnII GATC 3 cut(s) 225, 499, 670
DraIII CACNNNGTG 1 cut(s) 839
DrdI GACNNNNNNGTC 1 cut(s) 274
DseDI GACNNNNNNGTC 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 508, 596
Eco47I GGWCC 3 cut(s) 276, 533, 593
Eco57I CTGAAG 3 cut(s) 129, 242, 598
Eco88I CYCGRG 1 cut(s) 780
Eco91I GGTNACC 1 cut(s) 1153
EcoNI CCTNNNNNAGG 1 cut(s) 507
EcoO65I GGTNACC 1 cut(s) 1153
EcoRI GAATTC 1 cut(s) 240
EcoRII CCWGG 6 cut(s) 235, 409, 427, 495, 722, 1031
EcoT14I CCWWGG 2 cut(s) 508, 596
ErhI CCWWGG 2 cut(s) 508, 596
FaeI CATG 7 cut(s) 68, 486, 580, 600, 677, 768, 882
FalI AAGNNNNNCTT 2 cut(s) 732, 764
FaqI GGGAC 4 cut(s) 28, 477, 519, 1143
FatI CATG 7 cut(s) 64, 482, 576, 596, 673, 764, 878
FauNDI CATATG 1 cut(s) 847
FbaI TGATCA 1 cut(s) 670
FblI GTMKAC 1 cut(s) 255
FokI GGATG 1 cut(s) 1155
GlaI GCGC 1 cut(s) 624
GsaI CCCAGC 1 cut(s) 878
HaeII RGCGCY 1 cut(s) 626
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 1140
HhaI GCGC 1 cut(s) 625
Hin1II CATG 7 cut(s) 68, 486, 580, 600, 677, 768, 882
Hin6I GCGC 1 cut(s) 623
HinP1I GCGC 1 cut(s) 623
HincII GTYRAC 3 cut(s) 163, 256, 367
HindII GTYRAC 3 cut(s) 163, 256, 367
HindIII AAGCTT 1 cut(s) 698
HinfI GANTC 5 cut(s) 206, 304, 326, 606, 961
HpaI GTTAAC 1 cut(s) 163
HpaII CCGG 1 cut(s) 1140
HphI GGTGA 3 cut(s) 220, 894, 1018
Hpy166II GTNNAC 5 cut(s) 163, 256, 367, 754, 1077
Hpy188I TCNGA 6 cut(s) 50, 222, 588, 915, 956, 993
Hpy188III TCNNGA 5 cut(s) 107, 330, 577, 674, 740
Hpy8I GTNNAC 5 cut(s) 163, 256, 367, 754, 1077
HpyAV CCTTC 3 cut(s) 104, 513, 803
HpyCH4III ACNGT 3 cut(s) 169, 271, 1088
HpyCH4V TGCA 8 cut(s) 14, 377, 548, 754, 845, 975, 1077, 1095
HpyF3I CTNAG 2 cut(s) 47, 968
Hsp92II CATG 7 cut(s) 68, 486, 580, 600, 677, 768, 882
HspAI GCGC 1 cut(s) 623
Ksp22I TGATCA 1 cut(s) 670
KspAI GTTAAC 1 cut(s) 163
Kzo9I GATC 3 cut(s) 225, 499, 670
LmnI GCTCC 1 cut(s) 620
MabI ACCWGGT 1 cut(s) 427
MaeIII GTNAC 2 cut(s) 413, 1153
MalI GATC 3 cut(s) 227, 501, 672
MboI GATC 3 cut(s) 225, 499, 670
MboII GAAGA 3 cut(s) 235, 653, 692
MflI RGATCY 1 cut(s) 499
MhlI GDGCHC 2 cut(s) 756, 1079
MlsI TGGCCA 1 cut(s) 57
MluCI AATT 6 cut(s) 240, 453, 581, 714, 1010, 1108
MluNI TGGCCA 1 cut(s) 57
MlyI GAGTC 2 cut(s) 200, 955
MmeI TCCRAC 2 cut(s) 115, 306
MnlI CCTC 7 cut(s) 56, 182, 209, 289, 559, 636, 1120
Mox20I TGGCCA 1 cut(s) 57
MscI TGGCCA 1 cut(s) 57
MseI TTAA 3 cut(s) 162, 632, 705
MslI CAYNNNNRTG 2 cut(s) 883, 1046
Msp20I TGGCCA 1 cut(s) 57
MspI CCGG 1 cut(s) 1140
MspR9I CCNGG 6 cut(s) 237, 411, 429, 497, 724, 1033
MvaI CCWGG 6 cut(s) 237, 411, 429, 497, 724, 1033
NcoI CCATGG 1 cut(s) 596
NdeI CATATG 1 cut(s) 847
NdeII GATC 3 cut(s) 225, 499, 670
NlaIII CATG 7 cut(s) 68, 486, 580, 600, 677, 768, 882
NlaIV GGNNCC 5 cut(s) 82, 501, 535, 791, 1138
NmuCI GTSAC 1 cut(s) 1153
NspI RCATGY 1 cut(s) 882
PagI TCATGA 2 cut(s) 576, 673
PfeI GAWTC 3 cut(s) 304, 326, 606
PflMI CCANNNNNTGG 2 cut(s) 602, 881
PfoI TCCNGGA 1 cut(s) 235
PleI GAGTC 2 cut(s) 200, 955
PpsI GAGTC 2 cut(s) 200, 955
PsiI TTATAA 1 cut(s) 696
Psp6I CCWGG 6 cut(s) 235, 409, 427, 495, 722, 1031
PspEI GGTNACC 1 cut(s) 1153
PspFI CCCAGC 1 cut(s) 874
PspGI CCWGG 6 cut(s) 235, 409, 427, 495, 722, 1031
PspN4I GGNNCC 5 cut(s) 82, 501, 535, 791, 1138
PspPI GGNCC 3 cut(s) 276, 533, 593
PstI CTGCAG 1 cut(s) 379
PsuI RGATCY 1 cut(s) 499
RsaI GTAC 3 cut(s) 34, 146, 998
RsaNI GTAC 3 cut(s) 33, 145, 997
RseI CAYNNNNRTG 2 cut(s) 883, 1046
SalI GTCGAC 1 cut(s) 254
SaqAI TTAA 3 cut(s) 162, 632, 705
Sau3AI GATC 3 cut(s) 225, 499, 670
Sau96I GGNCC 3 cut(s) 276, 533, 593
ScaI AGTACT 1 cut(s) 998
SchI GAGTC 2 cut(s) 200, 955
ScrFI CCNGG 6 cut(s) 237, 411, 429, 497, 724, 1033
SduI GDGCHC 2 cut(s) 756, 1079
SexAI ACCWGGT 1 cut(s) 427
SfcI CTRYAG 1 cut(s) 375
SinI GGWCC 3 cut(s) 276, 533, 593
SmiMI CAYNNNNRTG 2 cut(s) 883, 1046
SmlI CTYRAG 1 cut(s) 738
SmoI CTYRAG 1 cut(s) 738
Sse9I AATT 6 cut(s) 240, 453, 581, 714, 1010, 1108
SsiI CCGC 1 cut(s) 610
SspI AATATT 2 cut(s) 686, 862
StyD4I CCNGG 6 cut(s) 235, 409, 427, 495, 722, 1031
StyI CCWWGG 2 cut(s) 508, 596
TaaI ACNGT 3 cut(s) 169, 271, 1088
TaqI TCGA 1 cut(s) 255
TaqII GACCGA 1 cut(s) 562
TasI AATT 6 cut(s) 240, 453, 581, 714, 1010, 1108
TatI WGTACW 1 cut(s) 996
TfiI GAWTC 3 cut(s) 304, 326, 606
Tru1I TTAA 3 cut(s) 162, 632, 705
Tru9I TTAA 3 cut(s) 162, 632, 705
TscAI CASTG 4 cut(s) 172, 208, 622, 972
TseFI GTSAC 1 cut(s) 1153
Tsp45I GTSAC 1 cut(s) 1153
TspDTI ATGAA 5 cut(s) 449, 593, 693, 785, 1064
TspRI CASTG 4 cut(s) 172, 208, 622, 972
Van91I CCANNNNNTGG 2 cut(s) 602, 881
VneI GTGCAC 2 cut(s) 752, 1075
VpaK11BI GGWCC 3 cut(s) 276, 533, 593
XagI CCTNNNNNAGG 1 cut(s) 507
XapI RAATTY 2 cut(s) 240, 581
XceI RCATGY 1 cut(s) 882
XcmI CCANNNNNNNNNTGG 2 cut(s) 71, 730
XmiI GTMKAC 1 cut(s) 255
ZrmI AGTACT 1 cut(s) 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.