Rorug05G0092700

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000484
Physical Location & Seq
Forward (+)
8159711 .. 8163983
4273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0092700.1

Sequence Viewer

Length: 1047 bp
ATGGACGCTTTAAGAAAACAAGCCAGTAAGCTCAGGGACCAGGTCGCAAAGCAGCAACAGGCTGTGATAAAGCAGTTTGGTGGGACTGGTTATGAAAGCTCAGATGTAATGGTGATAGATGAGGTTGAGATGCAGAGGCATCAGCAGCTTGAGAAACTGTATAGGTCTACTCGTGCAGGAAAGGATTTTCAGAAAGAAATTGTAAAAGCAGCGGAAGCACTGACAGCCATAGGATATAAGCATATTGAAGCAGGGACCAAGTTGTCTGAGGATTGTAGCAGATATGGTGCTGAAAATGTCCACGATAAAATTTTAGCTAAAGGTGCATCTATATATGGTGATGCTCGTAAGCATGTGGAAAAGGAACAAGAAGACTTGAATAAGTTGTTGTCTTCACAGGTTTTAGATCCGTTAAGAGCAATGATACTTGGTGCTCCTTTGGAAGATGCTCGTCATCTTGCTCAACGTTATAGTCGAATGCGGCAGGAAGCAGAGACACAGGCAGTTGAAGTTTCCAGAAGGCTAGCACGAGTTAAAGAAATCCCAAATCCAGAAAATGTTGGAAAGCTGCATGCAGCAGAAACAAAGATGAAAGAAATAAAAGCAAATATGGCAGTTCTGGGTATAGAAGCTTCAGCTGCCTTGGCTGCTGTGGAAGCACAGCAGCAAAGACTAACATTTCAGAGGCTTGTTGCACTGGTTGAAGGAGAAAAGAATTATCATCTGAGAGTGGCTGCTATTCTTGGTGAGGTTGAAGCTGAGATGGTCTCAGAGAAACAGCGTAAGGAGTCTGCTCCTCCTGTGATTCCCCAGGATAGCTTCTCAGAGAAAACAATGTACTTCTTGGCCGAAGCAACTCATTCTTTCACTGCTGCATCGGAGAAGGAACTGAGCTTGTCAGTGGGTGACTACGTTGTTGTGCGAAAGGTGAGCCCATCAGGATGGTCAGAAGGAGAGTGCAAAGGCAAAGGAGGGTGGTTTCCATCGGCATACGTGGAGAAGCGTCAACGGATTCCGTCCACTGATCTTTCTTCTGAAGTTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

348

Amino Acids

38.76

Weight (kDa)

7.11

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_9 PF14604 285 - 333 1.1e-09 Variant SH3 domain
SH3_1 PF00018 285 - 329 9.4e-09 SH3 domain
SH3_2 PF07653 285 - 334 4.5e-08 Variant SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27290 AT4G27290
fragaria_vesca FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g21310 FvH4_3g21310
malus_domestica MD05G1219900.v1.1 MD05G1220200.v1.1 MD05G1230800.v1.1 MD05G1231100.v1.1 MD05G1231700.v1.1 MD05G1232100.v1.1 MD05G1232400.v1.1 MD05G1233000.v1.1 MD10G1202800.v1.1
prunus_persica Prupe.4G139500_v2.0.a1 Prupe.4G139500_v2.0.a1
pyrus_communis pycom05g20170 pycom05g20200 pycom05g20230 pycom05g20250 pycom05g20260 pycom05g20280 pycom05g20320 pycom05g20370 pycom05g20380 pycom05g24850 pycom10g17340
rosa_chinensis RchiOBHm_Chr5g0026351 RchiOBHm_Chr5g0026371 RchiOBHm_Chr5g0026381 RchiOBHm_Chr5g0026411 RchiOBHm_Chr5g0026551 RchiOBHm_Chr5g0036371
rosa_laevigata RLG00000032923 RLG00000032926 RLG00000032927 RLG00000032928 RLG00000032934 RLG00000033692
rosa_multiflora Rmu_co8389779.1_g000001 Rmu_sc0000712.1_g000012 Rmu_sc0001017.1_g000026 Rmu_sc0001114.1_g000001 Rmu_sc0001114.1_g000002 Rmu_sc0001114.1_g000008 Rmu_sc0005581.1_g000006 Rmu_sc0005581.1_g000007 Rmu_sc0006059.1_g000052 Rmu_sc0042966.1_g000001
rosa_roxburghii Rroxscaffold_1G00044440 Rroxscaffold_1G00052930 Rroxscaffold_1G00052980 Rroxscaffold_1G00052990 Rroxscaffold_1G00053000
rosa_rugosa Rorug05G0092500 Rorug05G0092500 Rorug05G0092500 Rorug05G0092600 Rorug05G0092700 Rorug05G0092700 Rorug05G0093700 Rorug05G0155200 Rorug05G0155800 Rorug05G0155800
rosa_samantha Rh5AG185700 Rh5AG186300 Rh5BG182600 Rh5BG182900 Rh5BG183600 Rh5BG249400 Rh5CG202000 Rh5CG202100 Rh5CG202200 Rh5CG203400 Rh5CG281200 Rh5DG184400 Rh5DG184500 Rh5DG185900
rosa_wichuraiana Rw5G016850 Rw5G016870 Rw5G016930 Rw5G022870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 262
AccI GTMKAC 1 cut(s) 167
AciI CCGC 2 cut(s) 212, 481
AclI AACGTT 1 cut(s) 466
AclWI GGATC 1 cut(s) 401
AcoI YGGCCR 1 cut(s) 846
AcsI RAATTY 1 cut(s) 309
AcuI CTGAAG 1 cut(s) 618
AfaI GTAC 1 cut(s) 839
AgsI TTSAA 5 cut(s) 248, 379, 509, 704, 755
AjnI CCWGG 2 cut(s) 39, 810
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 2 cut(s) 488, 772
AlwI GGATC 1 cut(s) 401
AoxI GGCC 1 cut(s) 846
ApoI RAATTY 1 cut(s) 309
AspS9I GGNCC 2 cut(s) 37, 255
AsuHPI GGTGA 5 cut(s) 124, 350, 758, 917, 940
AsuNHI GCTAGC 1 cut(s) 523
AvaII GGWCC 2 cut(s) 37, 255
BanII GRGCYC 1 cut(s) 935
BarI GAAGNNNNNNTAC 2 cut(s) 616, 648
BauI CACGAG 2 cut(s) 171, 528
BbsI GAAGAC 2 cut(s) 378, 384
Bbv12I GWGCWC 1 cut(s) 436
BccI CCATC 4 cut(s) 757, 936, 943, 991
BciT130I CCWGG 2 cut(s) 41, 812
BcoDI GTCTC 2 cut(s) 488, 772
BfaI CTAG 1 cut(s) 524
Bme1390I CCNGG 2 cut(s) 41, 812
Bme18I GGWCC 2 cut(s) 37, 255
BmgT120I GGNCC 2 cut(s) 37, 255
BmiI GGNNCC 2 cut(s) 38, 256
BmrFI CCNGG 2 cut(s) 41, 812
BmsI GCATC 6 cut(s) 120, 148, 331, 335, 436, 884
BmtI GCTAGC 1 cut(s) 527
BpiI GAAGAC 2 cut(s) 378, 384
BplI GAGNNNNNCTC 2 cut(s) 752, 784
Bpu10I CCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 170
BsaAI YACGTR 1 cut(s) 994
BsaI GGTCTC 1 cut(s) 772
BsaJI CCNNGG 2 cut(s) 642, 810
Bse1I ACTGG 3 cut(s) 24, 91, 702
Bse3DI GCAATG 1 cut(s) 426
BseBI CCWGG 2 cut(s) 41, 812
BseDI CCNNGG 2 cut(s) 642, 810
BseGI GGATG 1 cut(s) 947
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 8 cut(s) 46, 114, 258, 716, 750, 783, 837, 881
BseNI ACTGG 3 cut(s) 24, 91, 702
BseRI GAGGAG 1 cut(s) 786
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 1 cut(s) 848
BsiHKAI GWGCWC 1 cut(s) 436
BslFI GGGAC 3 cut(s) 50, 97, 268
BsmAI GTCTC 2 cut(s) 488, 772
BsmFI GGGAC 3 cut(s) 50, 97, 268
BsmI GAATGC 1 cut(s) 483
BsnI GGCC 1 cut(s) 848
Bso31I GGTCTC 1 cut(s) 772
Bsp1286I GDGCHC 2 cut(s) 436, 935
Bsp143I GATC 2 cut(s) 406, 1024
BspACI CCGC 2 cut(s) 212, 481
BspANI GGCC 1 cut(s) 848
BspCNI CTCAG 8 cut(s) 45, 113, 259, 717, 751, 782, 836, 882
BspLI GGNNCC 2 cut(s) 38, 256
BspOI GCTAGC 1 cut(s) 527
BspPI GGATC 1 cut(s) 401
BspTNI GGTCTC 1 cut(s) 772
BsrDI GCAATG 1 cut(s) 426
BsrI ACTGG 3 cut(s) 24, 91, 702
BssECI CCNNGG 2 cut(s) 642, 810
BssMI GATC 2 cut(s) 406, 1024
BssSI CACGAG 2 cut(s) 171, 528
BssT1I CCWWGG 1 cut(s) 642
Bst2BI CACGAG 2 cut(s) 171, 528
Bst2UI CCWGG 2 cut(s) 41, 812
Bst4CI ACNGT 1 cut(s) 159
BstBAI YACGTR 1 cut(s) 994
BstC8I GCNNGC 2 cut(s) 525, 573
BstDEI CTNAG 8 cut(s) 32, 100, 267, 725, 759, 769, 823, 890
BstF5I GGATG 1 cut(s) 947
BstKTI GATC 2 cut(s) 409, 1027
BstMAI GTCTC 2 cut(s) 488, 772
BstMBI GATC 2 cut(s) 406, 1024
BstMWI GCNNNNNNNGC 9 cut(s) 145, 215, 224, 323, 611, 638, 644, 647, 656
BstNI CCWGG 2 cut(s) 41, 812
BstNSI RCATGY 2 cut(s) 356, 575
BstSCI CCNGG 2 cut(s) 39, 810
BstV2I GAAGAC 2 cut(s) 378, 384
BstX2I RGATCY 1 cut(s) 406
BstXI CCANNNNNNTGG 1 cut(s) 942
BstYI RGATCY 1 cut(s) 406
BsuRI GGCC 1 cut(s) 848
BtsCI GGATG 1 cut(s) 947
BtsI GCAGTG 1 cut(s) 867
BtsIMutI CAGTG 5 cut(s) 218, 695, 867, 906, 1020
Cac8I GCNNGC 2 cut(s) 525, 573
Cfr13I GGNCC 2 cut(s) 37, 255
CseI GACGC 2 cut(s) 14, 992
CsiI ACCWGGT 1 cut(s) 39
Csp6I GTAC 1 cut(s) 838
CviAII CATG 2 cut(s) 353, 572
CviQI GTAC 1 cut(s) 838
DdeI CTNAG 8 cut(s) 32, 100, 267, 725, 759, 769, 823, 890
DpnI GATC 2 cut(s) 408, 1026
DpnII GATC 2 cut(s) 406, 1024
DrdI GACNNNNNNGTC 1 cut(s) 262
DseDI GACNNNNNNGTC 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 846
Eco130I CCWWGG 1 cut(s) 642
Eco24I GRGCYC 1 cut(s) 935
Eco31I GGTCTC 1 cut(s) 772
Eco47I GGWCC 2 cut(s) 37, 255
Eco57I CTGAAG 1 cut(s) 618
EcoRII CCWGG 2 cut(s) 39, 810
EcoT14I CCWWGG 1 cut(s) 642
EcoT38I GRGCYC 1 cut(s) 935
ErhI CCWWGG 1 cut(s) 642
FaeI CATG 2 cut(s) 356, 575
FaqI GGGAC 3 cut(s) 50, 97, 268
FatI CATG 2 cut(s) 352, 571
FblI GTMKAC 1 cut(s) 167
FokI GGATG 1 cut(s) 954
FriOI GRGCYC 1 cut(s) 935
FspBI CTAG 1 cut(s) 524
HaeIII GGCC 1 cut(s) 848
HgaI GACGC 2 cut(s) 14, 992
Hin1II CATG 2 cut(s) 356, 575
HincII GTYRAC 1 cut(s) 1007
HindII GTYRAC 1 cut(s) 1007
HindIII AAGCTT 1 cut(s) 630
HinfI GANTC 3 cut(s) 788, 805, 1012
HphI GGTGA 5 cut(s) 124, 350, 758, 917, 940
Hpy166II GTNNAC 5 cut(s) 168, 301, 1007, 1020, 1042
Hpy188III TCNNGA 3 cut(s) 516, 551, 939
Hpy8I GTNNAC 5 cut(s) 168, 301, 1007, 1020, 1042
HpyAV CCTTC 4 cut(s) 513, 698, 877, 944
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4IV ACGT 3 cut(s) 466, 912, 993
HpyCH4V TGCA 8 cut(s) 133, 176, 326, 571, 575, 695, 875, 960
HpyF10VI GCNNNNNNNGC 9 cut(s) 145, 215, 224, 323, 611, 638, 644, 647, 656
HpyF3I CTNAG 8 cut(s) 32, 100, 267, 725, 759, 769, 823, 890
HpySE526I ACGT 3 cut(s) 466, 912, 993
Hsp92II CATG 2 cut(s) 356, 575
Kzo9I GATC 2 cut(s) 406, 1024
LmnI GCTCC 2 cut(s) 439, 799
LweI GCATC 6 cut(s) 120, 148, 331, 335, 436, 884
MabI ACCWGGT 1 cut(s) 39
MaeI CTAG 1 cut(s) 524
MaeII ACGT 3 cut(s) 466, 912, 993
MaeIII GTNAC 1 cut(s) 905
MalI GATC 2 cut(s) 408, 1026
MboI GATC 2 cut(s) 406, 1024
MboII GAAGA 4 cut(s) 383, 384, 455, 1023
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 2 cut(s) 436, 935
MluCI AATT 3 cut(s) 198, 309, 715
MlyI GAGTC 1 cut(s) 797
MmeI TCCRAC 1 cut(s) 541
MnlI CCTC 7 cut(s) 115, 129, 262, 678, 742, 807, 965
MseI TTAA 3 cut(s) 11, 413, 534
MslI CAYNNNNRTG 1 cut(s) 940
MspA1I CMGCKG 2 cut(s) 212, 638
MspR9I CCNGG 2 cut(s) 41, 812
Mva1269I GAATGC 1 cut(s) 483
MvaI CCWGG 2 cut(s) 41, 812
MwoI GCNNNNNNNGC 9 cut(s) 145, 215, 224, 323, 611, 638, 644, 647, 656
NdeII GATC 2 cut(s) 406, 1024
NheI GCTAGC 1 cut(s) 523
NlaIII CATG 2 cut(s) 356, 575
NlaIV GGNNCC 2 cut(s) 38, 256
NmuCI GTSAC 1 cut(s) 905
NspI RCATGY 2 cut(s) 356, 575
PaeI GCATGC 1 cut(s) 575
PcsI WCGNNNNNNNCGW 1 cut(s) 472
PctI GAATGC 1 cut(s) 483
PfeI GAWTC 2 cut(s) 805, 1012
PflFI GACNNNGTC 1 cut(s) 41
PleI GAGTC 1 cut(s) 796
PpsI GAGTC 1 cut(s) 796
Ppu21I YACGTR 1 cut(s) 994
Psp1406I AACGTT 1 cut(s) 466
Psp6I CCWGG 2 cut(s) 39, 810
PspGI CCWGG 2 cut(s) 39, 810
PspN4I GGNNCC 2 cut(s) 38, 256
PspPI GGNCC 2 cut(s) 37, 255
PsuI RGATCY 1 cut(s) 406
PsyI GACNNNGTC 1 cut(s) 41
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 1 cut(s) 839
RsaNI GTAC 1 cut(s) 838
RseI CAYNNNNRTG 1 cut(s) 940
SaqAI TTAA 3 cut(s) 11, 413, 534
Sau3AI GATC 2 cut(s) 406, 1024
Sau96I GGNCC 2 cut(s) 37, 255
SchI GAGTC 1 cut(s) 797
ScrFI CCNGG 2 cut(s) 41, 812
SduI GDGCHC 2 cut(s) 436, 935
SexAI ACCWGGT 1 cut(s) 39
SfaNI GCATC 6 cut(s) 120, 148, 331, 335, 436, 884
SinI GGWCC 2 cut(s) 37, 255
SmiMI CAYNNNNRTG 1 cut(s) 940
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SphI GCATGC 1 cut(s) 575
Sse9I AATT 3 cut(s) 198, 309, 715
SsiI CCGC 2 cut(s) 212, 481
SspMI CTAG 1 cut(s) 524
StyD4I CCNGG 2 cut(s) 39, 810
StyI CCWWGG 1 cut(s) 642
TaaI ACNGT 1 cut(s) 159
TaiI ACGT 3 cut(s) 469, 915, 996
TaqI TCGA 1 cut(s) 475
TasI AATT 3 cut(s) 198, 309, 715
TatI WGTACW 1 cut(s) 837
TauI GCSGC 1 cut(s) 484
TfiI GAWTC 2 cut(s) 805, 1012
Tru1I TTAA 3 cut(s) 11, 413, 534
Tru9I TTAA 3 cut(s) 11, 413, 534
TscAI CASTG 5 cut(s) 225, 702, 874, 906, 1027
TseFI GTSAC 1 cut(s) 905
Tsp45I GTSAC 1 cut(s) 905
TspDTI ATGAA 2 cut(s) 108, 605
TspGWI ACGGA 3 cut(s) 399, 1005, 1024
TspRI CASTG 5 cut(s) 225, 702, 874, 906, 1027
Tth111I GACNNNGTC 1 cut(s) 41
VpaK11BI GGWCC 2 cut(s) 37, 255
XapI RAATTY 1 cut(s) 309
XceI RCATGY 2 cut(s) 356, 575
XmiI GTMKAC 1 cut(s) 167
XspI CTAG 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.