Rmu_sc0042966.1_g000001

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042966.1
Physical Location & Seq
Forward (+)
878 .. 1647
770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042966.1_g000001.1.cds

Sequence Viewer

Length: 770 bp
atgatcacagcaatggtttccattgcagatgacacatacacaagtacctttcagtccctcagagatggccagacccatgtttcaactggtggaacctttgagcttggatttttcactcctgaaggtgcttctaataagcgatatgttggcatatggtacaagaatatacccgttaacactgttgtatgggttgccaacagagacacacccctcactgactcatcaggtgttctgaagatcaccagtcctggaattcttgtccttgtcgaccataacaagacagtttggtcctccaacacttcaagtccagcacagaatccagtggctcagcttttggattcaggaaatcttgttgtgatagataagagtgataatgttgacccatctgcagagagctctctgtggcaaagttttgactacccaggtgatacattgctaccaggtatgaaacttggtagaagcacaattacaggtttcaaatcgttcatgtcatcatggaaaagtccccaggatccttcccaaggcaactatacatttcaacatggtcccaaaggatatgcagagcagattatgatggagggttcggtcatgaaatttcggactggaccatggaatggcatccgcttcagtggagcgcctcatttaagtccaaatccaatatacacatacaatcttctttttgatcatggtgaagaatattattcttataaacttcttaacaggtcaattctttccaggctggtgttggctcaagatgggcttgtgcaccg

Protein Analysis

257

Amino Acids

28.4

Weight (kDa)

6.29

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27290 AT4G27290
fragaria_vesca FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g21310 FvH4_3g21310
malus_domestica MD05G1219900.v1.1 MD05G1220200.v1.1 MD05G1230800.v1.1 MD05G1231100.v1.1 MD05G1231700.v1.1 MD05G1232100.v1.1 MD05G1232400.v1.1 MD05G1233000.v1.1 MD10G1202800.v1.1
prunus_persica Prupe.4G139500_v2.0.a1 Prupe.4G139500_v2.0.a1
pyrus_communis pycom05g20170 pycom05g20200 pycom05g20230 pycom05g20250 pycom05g20260 pycom05g20280 pycom05g20320 pycom05g20370 pycom05g20380 pycom05g24850 pycom10g17340
rosa_chinensis RchiOBHm_Chr5g0026351 RchiOBHm_Chr5g0026371 RchiOBHm_Chr5g0026381 RchiOBHm_Chr5g0026411 RchiOBHm_Chr5g0026551 RchiOBHm_Chr5g0036371
rosa_laevigata RLG00000032923 RLG00000032926 RLG00000032927 RLG00000032928 RLG00000032934 RLG00000033692
rosa_multiflora Rmu_co8389779.1_g000001 Rmu_sc0000712.1_g000012 Rmu_sc0001017.1_g000026 Rmu_sc0001114.1_g000001 Rmu_sc0001114.1_g000002 Rmu_sc0001114.1_g000008 Rmu_sc0005581.1_g000006 Rmu_sc0005581.1_g000007 Rmu_sc0006059.1_g000052 Rmu_sc0042966.1_g000001
rosa_roxburghii Rroxscaffold_1G00044440 Rroxscaffold_1G00052930 Rroxscaffold_1G00052980 Rroxscaffold_1G00052990 Rroxscaffold_1G00053000
rosa_rugosa Rorug05G0092500 Rorug05G0092500 Rorug05G0092500 Rorug05G0092600 Rorug05G0092700 Rorug05G0092700 Rorug05G0093700 Rorug05G0155200 Rorug05G0155800 Rorug05G0155800
rosa_samantha Rh5AG185700 Rh5AG186300 Rh5BG182600 Rh5BG182900 Rh5BG183600 Rh5BG249400 Rh5CG202000 Rh5CG202100 Rh5CG202200 Rh5CG203400 Rh5CG281200 Rh5DG184400 Rh5DG184500 Rh5DG185900
rosa_wichuraiana Rw5G016850 Rw5G016870 Rw5G016930 Rw5G022870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 708
AasI GACNNNNNNGTC 1 cut(s) 286
AccB7I CCANNNNNTGG 1 cut(s) 614
AccI GTMKAC 1 cut(s) 267
AciI CCGC 1 cut(s) 622
AclWI GGATC 2 cut(s) 506, 519
AcoI YGGCCR 1 cut(s) 67
AcsI RAATTY 2 cut(s) 252, 593
AcuI CTGAAG 3 cut(s) 141, 254, 610
AfaI GTAC 2 cut(s) 46, 158
AfiI CCNNNNNNNGG 2 cut(s) 521, 614
AgsI TTSAA 4 cut(s) 84, 303, 478, 539
AjnI CCWGG 5 cut(s) 247, 421, 439, 507, 734
AluBI AGCT 3 cut(s) 103, 331, 396
AluI AGCT 3 cut(s) 103, 331, 396
Alw21I GWGCWC 2 cut(s) 398, 768
Alw26I GTCTC 1 cut(s) 195
Alw44I GTGCAC 1 cut(s) 764
AlwI GGATC 2 cut(s) 506, 519
AoxI GGCC 1 cut(s) 67
ApaLI GTGCAC 1 cut(s) 764
ApoI RAATTY 2 cut(s) 252, 593
AspLEI GCGC 1 cut(s) 637
AspS9I GGNCC 3 cut(s) 288, 545, 605
AsuHPI GGTGA 3 cut(s) 232, 437, 701
AvaII GGWCC 3 cut(s) 288, 545, 605
BaeGI GKGCMC 1 cut(s) 768
BaeI ACNNNNGTAYC 2 cut(s) 28, 61
BalI TGGCCA 1 cut(s) 69
BamHI GGATCC 1 cut(s) 511
BanII GRGCYC 1 cut(s) 398
BarI GAAGNNNNNNTAC 2 cut(s) 451, 483
Bbv12I GWGCWC 2 cut(s) 398, 768
BccI CCATC 4 cut(s) 59, 391, 568, 749
BciT130I CCWGG 5 cut(s) 249, 423, 441, 509, 736
BclI TGATCA 2 cut(s) 3, 682
BcoDI GTCTC 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 387
BfoI RGCGCY 1 cut(s) 638
BlpI GCTNAGC 1 cut(s) 327
Bme1390I CCNGG 5 cut(s) 249, 423, 441, 509, 736
Bme18I GGWCC 3 cut(s) 288, 545, 605
BmgT120I GGNCC 3 cut(s) 288, 545, 605
BmiI GGNNCC 3 cut(s) 94, 513, 547
BmrFI CCNGG 5 cut(s) 249, 423, 441, 509, 736
BmsI GCATC 1 cut(s) 627
Bpu1102I GCTNAGC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 735
BsaJI CCNNGG 4 cut(s) 421, 507, 520, 608
Bsc4I CCNNNNNNNGG 2 cut(s) 521, 614
Bse1I ACTGG 4 cut(s) 91, 243, 320, 607
Bse3DI GCAATG 3 cut(s) 18, 21, 431
BseBI CCWGG 5 cut(s) 249, 423, 441, 509, 736
BseDI CCNNGG 4 cut(s) 421, 507, 520, 608
BseGI GGATG 1 cut(s) 618
BseLI CCNNNNNNNGG 2 cut(s) 521, 614
BseMI GCAATG 3 cut(s) 18, 21, 431
BseMII CTCAG 2 cut(s) 73, 341
BseNI ACTGG 4 cut(s) 91, 243, 320, 607
BseSI GKGCMC 1 cut(s) 768
BshFI GGCC 1 cut(s) 69
BsiHKAI GWGCWC 2 cut(s) 398, 768
BslFI GGGAC 3 cut(s) 40, 489, 531
BslI CCNNNNNNNGG 2 cut(s) 521, 614
BsmAI GTCTC 1 cut(s) 195
BsmFI GGGAC 3 cut(s) 40, 489, 531
BsnI GGCC 1 cut(s) 69
Bsp1286I GDGCHC 2 cut(s) 398, 768
Bsp143I GATC 4 cut(s) 3, 237, 511, 682
Bsp1720I GCTNAGC 1 cut(s) 327
Bsp19I CCATGG 1 cut(s) 608
BspACI CCGC 1 cut(s) 622
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 2 cut(s) 72, 340
BspHI TCATGA 1 cut(s) 588
BspLI GGNNCC 3 cut(s) 94, 513, 547
BspMAI CTGCAG 1 cut(s) 391
BspPI GGATC 2 cut(s) 506, 519
BsrDI GCAATG 3 cut(s) 18, 21, 431
BsrI ACTGG 4 cut(s) 91, 243, 320, 607
BssECI CCNNGG 4 cut(s) 421, 507, 520, 608
BssMI GATC 4 cut(s) 3, 237, 511, 682
BssT1I CCWWGG 2 cut(s) 520, 608
Bst2UI CCWGG 5 cut(s) 249, 423, 441, 509, 736
Bst4CI ACNGT 2 cut(s) 181, 283
BstDEI CTNAG 2 cut(s) 59, 327
BstDSI CCRYGG 1 cut(s) 608
BstENI CCTNNNNNAGG 1 cut(s) 519
BstF5I GGATG 1 cut(s) 618
BstH2I RGCGCY 1 cut(s) 638
BstHHI GCGC 1 cut(s) 637
BstKTI GATC 4 cut(s) 6, 240, 514, 685
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 4 cut(s) 3, 237, 511, 682
BstNI CCWGG 5 cut(s) 249, 423, 441, 509, 736
BstSCI CCNGG 5 cut(s) 247, 421, 439, 507, 734
BstSFI CTRYAG 1 cut(s) 387
BstSLI GKGCMC 1 cut(s) 768
BstX2I RGATCY 1 cut(s) 511
BstYI RGATCY 1 cut(s) 511
BsuRI GGCC 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 608
BtsCI GGATG 1 cut(s) 618
BtsIMutI CAGTG 4 cut(s) 177, 213, 327, 634
CciI TCATGA 1 cut(s) 588
CfoI GCGC 1 cut(s) 637
Cfr13I GGNCC 3 cut(s) 288, 545, 605
CsiI ACCWGGT 1 cut(s) 439
Csp6I GTAC 2 cut(s) 45, 157
CviAII CATG 7 cut(s) 77, 487, 495, 542, 589, 609, 686
CviJI RGCY 8 cut(s) 69, 103, 326, 331, 396, 739, 749, 760
CviKI_1 RGCY 8 cut(s) 69, 103, 326, 331, 396, 739, 749, 760
CviQI GTAC 2 cut(s) 45, 157
DdeI CTNAG 2 cut(s) 59, 327
DpnI GATC 4 cut(s) 5, 239, 513, 684
DpnII GATC 4 cut(s) 3, 237, 511, 682
DrdI GACNNNNNNGTC 1 cut(s) 286
DseDI GACNNNNNNGTC 1 cut(s) 286
EaeI YGGCCR 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 396
Eco130I CCWWGG 2 cut(s) 520, 608
Eco24I GRGCYC 1 cut(s) 398
Eco47I GGWCC 3 cut(s) 288, 545, 605
Eco53kI GAGCTC 1 cut(s) 396
Eco57I CTGAAG 3 cut(s) 141, 254, 610
EcoICRI GAGCTC 1 cut(s) 396
EcoNI CCTNNNNNAGG 1 cut(s) 519
EcoRI GAATTC 1 cut(s) 252
EcoRII CCWGG 5 cut(s) 247, 421, 439, 507, 734
EcoT14I CCWWGG 2 cut(s) 520, 608
EcoT38I GRGCYC 1 cut(s) 398
ErhI CCWWGG 2 cut(s) 520, 608
FaeI CATG 7 cut(s) 80, 490, 498, 545, 592, 612, 689
FalI AAGNNNNNCTT 1 cut(s) 744
FaqI GGGAC 3 cut(s) 40, 489, 531
FatI CATG 7 cut(s) 76, 486, 494, 541, 588, 608, 685
FauNDI CATATG 1 cut(s) 152
FbaI TGATCA 2 cut(s) 3, 682
FblI GTMKAC 1 cut(s) 267
FokI GGATG 1 cut(s) 605
FriOI GRGCYC 1 cut(s) 398
GlaI GCGC 1 cut(s) 636
HaeII RGCGCY 1 cut(s) 638
HaeIII GGCC 1 cut(s) 69
HhaI GCGC 1 cut(s) 637
Hin1II CATG 7 cut(s) 80, 490, 498, 545, 592, 612, 689
Hin6I GCGC 1 cut(s) 635
HinP1I GCGC 1 cut(s) 635
HincII GTYRAC 3 cut(s) 175, 268, 379
HindII GTYRAC 3 cut(s) 175, 268, 379
HinfI GANTC 3 cut(s) 218, 316, 338
HpaI GTTAAC 1 cut(s) 175
HphI GGTGA 3 cut(s) 232, 437, 701
Hpy166II GTNNAC 4 cut(s) 175, 268, 379, 766
Hpy188I TCNGA 3 cut(s) 62, 234, 600
Hpy188III TCNNGA 4 cut(s) 119, 342, 589, 752
Hpy8I GTNNAC 4 cut(s) 175, 268, 379, 766
HpyAV CCTTC 2 cut(s) 116, 525
HpyCH4III ACNGT 2 cut(s) 181, 283
HpyCH4V TGCA 4 cut(s) 26, 389, 560, 766
HpyF3I CTNAG 2 cut(s) 59, 327
Hsp92II CATG 7 cut(s) 80, 490, 498, 545, 592, 612, 689
HspAI GCGC 1 cut(s) 635
Ksp22I TGATCA 2 cut(s) 3, 682
KspAI GTTAAC 1 cut(s) 175
Kzo9I GATC 4 cut(s) 3, 237, 511, 682
LmnI GCTCC 1 cut(s) 632
LweI GCATC 1 cut(s) 627
MabI ACCWGGT 1 cut(s) 439
MalI GATC 4 cut(s) 5, 239, 513, 684
MboI GATC 4 cut(s) 3, 237, 511, 682
MboII GAAGA 3 cut(s) 247, 665, 704
MflI RGATCY 1 cut(s) 511
MhlI GDGCHC 2 cut(s) 398, 768
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 4 cut(s) 252, 465, 593, 726
MluNI TGGCCA 1 cut(s) 69
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 5 cut(s) 68, 221, 301, 571, 648
Mox20I TGGCCA 1 cut(s) 69
MscI TGGCCA 1 cut(s) 69
MseI TTAA 3 cut(s) 174, 644, 717
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 1 cut(s) 69
MspR9I CCNGG 5 cut(s) 249, 423, 441, 509, 736
MvaI CCWGG 5 cut(s) 249, 423, 441, 509, 736
NcoI CCATGG 1 cut(s) 608
NdeI CATATG 1 cut(s) 152
NdeII GATC 4 cut(s) 3, 237, 511, 682
NlaIII CATG 7 cut(s) 80, 490, 498, 545, 592, 612, 689
NlaIV GGNNCC 3 cut(s) 94, 513, 547
PagI TCATGA 1 cut(s) 588
PfeI GAWTC 2 cut(s) 316, 338
PflMI CCANNNNNTGG 1 cut(s) 614
PfoI TCCNGGA 1 cut(s) 247
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PsiI TTATAA 1 cut(s) 708
Psp124BI GAGCTC 1 cut(s) 398
Psp6I CCWGG 5 cut(s) 247, 421, 439, 507, 734
PspGI CCWGG 5 cut(s) 247, 421, 439, 507, 734
PspN4I GGNNCC 3 cut(s) 94, 513, 547
PspPI GGNCC 3 cut(s) 288, 545, 605
PstI CTGCAG 1 cut(s) 391
PsuI RGATCY 1 cut(s) 511
RsaI GTAC 2 cut(s) 46, 158
RsaNI GTAC 2 cut(s) 45, 157
RseI CAYNNNNRTG 1 cut(s) 11
SacI GAGCTC 1 cut(s) 398
SalI GTCGAC 1 cut(s) 266
SaqAI TTAA 3 cut(s) 174, 644, 717
Sau3AI GATC 4 cut(s) 3, 237, 511, 682
Sau96I GGNCC 3 cut(s) 288, 545, 605
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 5 cut(s) 249, 423, 441, 509, 736
SduI GDGCHC 2 cut(s) 398, 768
SexAI ACCWGGT 1 cut(s) 439
SfaNI GCATC 1 cut(s) 627
SfcI CTRYAG 1 cut(s) 387
SinI GGWCC 3 cut(s) 288, 545, 605
SmiMI CAYNNNNRTG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 750
SmoI CTYRAG 1 cut(s) 750
Sse9I AATT 4 cut(s) 252, 465, 593, 726
SsiI CCGC 1 cut(s) 622
SspI AATATT 1 cut(s) 698
SstI GAGCTC 1 cut(s) 398
StyD4I CCNGG 5 cut(s) 247, 421, 439, 507, 734
StyI CCWWGG 2 cut(s) 520, 608
TaaI ACNGT 2 cut(s) 181, 283
TaqI TCGA 1 cut(s) 267
TaqII GACCGA 1 cut(s) 574
TasI AATT 4 cut(s) 252, 465, 593, 726
TfiI GAWTC 2 cut(s) 316, 338
Tru1I TTAA 3 cut(s) 174, 644, 717
Tru9I TTAA 3 cut(s) 174, 644, 717
TscAI CASTG 4 cut(s) 184, 220, 327, 634
TspDTI ATGAA 3 cut(s) 461, 475, 605
TspRI CASTG 4 cut(s) 184, 220, 327, 634
Van91I CCANNNNNTGG 1 cut(s) 614
VneI GTGCAC 1 cut(s) 764
VpaK11BI GGWCC 3 cut(s) 288, 545, 605
XagI CCTNNNNNAGG 1 cut(s) 519
XapI RAATTY 2 cut(s) 252, 593
XcmI CCANNNNNNNNNTGG 2 cut(s) 83, 742
XmiI GTMKAC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.