Rorug05G0093700

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000484
Physical Location & Seq
Forward (+)
8332089 .. 8369349
37261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0093700.1

Sequence Viewer

Length: 1092 bp
ATGGCATCACCCCAGCTACGGCTACCAGGAGGCTTTGAGAGCTCTAGCTCTCTTATGAGCATCCTGGAGATCACCAAAGAGTCACTAACTGAAGTCCCACAATGTTACGTCCGTAGTTTCGAAGAACCAGAACTTTCATCTGATCTCTCTGATAAGCCCACCGTAATCCCAACCATCGATATGATAAAACTAGTAACGGGATCAGAAGCTTCAGATTCTGAACTGGAAAATCTGCGCTCAACTTGCAAAGAGTGGGGAATCTTTCAGTTGGTGAACCATGGAGTTAGCCCTATGCTTTTGGAGAAGCTGAAGTACGAGGTTGAAGAATTCTTTAAGCTTCCCTTGGAAGAGAAAATGAAGTATCAGATAAGGCCTGGTGACGTTGAAGGCTATGGATCCATAGCCTATAAAGAGCAAAAACGTGACTGGGGTAATAGATTCTACATGACCATGAACCCTGTTCATAGGAGAAAGCCATACCTCTTCCCAGAGCTCCCTTCATCCCTCAGGAATACCTTCGAGTCATACTACTTGGAACTGAAGCAACTAGCCATGGAACTTATTGGGTTTCTGGGGAAGGCTGTGAAGATAGACATAAAAGAGACTGAGGAGATGTTTGAAGATGGGATGCAGTCAGTGAGGATGAATTACTATCCTGCATGCCCACAACCAGAGCTGGTCATCGGCTTCACACCTCACTCGGACGCTTCCGGGATCACCATCCTCCACCAGCTTAACGGGGTGGGTGGTCTGCAGATTAAGAAAGATGGGGTTTGGGTTCCTGTCAACTTCCGTGAAGATGCCTTTGTGGTTAATGCAGGGGACATCTTTGAGATCCTCAGCAATGGAGTGTACAAGAGCATGGAGCACAGAGCTATGGTGAACTCTGAGCAAGAGAGGATCTCAATCGCTATGTTCTTCAACCCCAAATTCGAGGCAGAAATTGGACCAGTGACCAGCTTGATAACCCCAGAAAACCCACCACTGTTCAAAAGGATTGGGATGGAACAGTACGTCCAAGATTTCTACACCCGCCGTAAGCTCGACGGGAAATCATACTTGGACCAAATGAGGCTCCAGAATGGGAATTGA

Protein Analysis

363

Amino Acids

41.57

Weight (kDa)

5.13

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 56 - 155 1.3e-25 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 211 - 309 1.1e-33 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27290 AT4G27290
fragaria_vesca FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g15690 FvH4_3g21310 FvH4_3g21310
malus_domestica MD05G1219900.v1.1 MD05G1220200.v1.1 MD05G1230800.v1.1 MD05G1231100.v1.1 MD05G1231700.v1.1 MD05G1232100.v1.1 MD05G1232400.v1.1 MD05G1233000.v1.1 MD10G1202800.v1.1
prunus_persica Prupe.4G139500_v2.0.a1 Prupe.4G139500_v2.0.a1
pyrus_communis pycom05g20170 pycom05g20200 pycom05g20230 pycom05g20250 pycom05g20260 pycom05g20280 pycom05g20320 pycom05g20370 pycom05g20380 pycom05g24850 pycom10g17340
rosa_chinensis RchiOBHm_Chr5g0026351 RchiOBHm_Chr5g0026371 RchiOBHm_Chr5g0026381 RchiOBHm_Chr5g0026411 RchiOBHm_Chr5g0026551 RchiOBHm_Chr5g0036371
rosa_laevigata RLG00000032923 RLG00000032926 RLG00000032927 RLG00000032928 RLG00000032934 RLG00000033692
rosa_multiflora Rmu_co8389779.1_g000001 Rmu_sc0000712.1_g000012 Rmu_sc0001017.1_g000026 Rmu_sc0001114.1_g000001 Rmu_sc0001114.1_g000002 Rmu_sc0001114.1_g000008 Rmu_sc0005581.1_g000006 Rmu_sc0005581.1_g000007 Rmu_sc0006059.1_g000052 Rmu_sc0042966.1_g000001
rosa_roxburghii Rroxscaffold_1G00044440 Rroxscaffold_1G00052930 Rroxscaffold_1G00052980 Rroxscaffold_1G00052990 Rroxscaffold_1G00053000
rosa_rugosa Rorug05G0092500 Rorug05G0092500 Rorug05G0092500 Rorug05G0092600 Rorug05G0092700 Rorug05G0092700 Rorug05G0093700 Rorug05G0155200 Rorug05G0155800 Rorug05G0155800
rosa_samantha Rh5AG185700 Rh5AG186300 Rh5BG182600 Rh5BG182900 Rh5BG183600 Rh5BG249400 Rh5CG202000 Rh5CG202100 Rh5CG202200 Rh5CG203400 Rh5CG281200 Rh5DG184400 Rh5DG184500 Rh5DG185900
rosa_wichuraiana Rw5G016850 Rw5G016870 Rw5G016930 Rw5G022870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1033
AclWI GGATC 6 cut(s) 208, 390, 403, 722, 829, 908
AcsI RAATTY 2 cut(s) 326, 929
AcuI CTGAAG 4 cut(s) 111, 195, 329, 560
AfaI GTAC 3 cut(s) 314, 854, 1013
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 5 cut(s) 323, 386, 620, 922, 991
AhlI ACTAGT 1 cut(s) 190
AjnI CCWGG 3 cut(s) 25, 63, 373
AjuI GAANNNNNNNTTGG 2 cut(s) 1043, 1075
AloI GAACNNNNNNTCC 2 cut(s) 999, 1031
Alw21I GWGCWC 3 cut(s) 44, 495, 870
Alw26I GTCTC 1 cut(s) 596
AlwI GGATC 6 cut(s) 208, 390, 403, 722, 829, 908
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 1 cut(s) 371
ApoI RAATTY 2 cut(s) 326, 929
Asp700I GAANNNNTTC 1 cut(s) 515
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 947, 1063
AsuC2I CCSGG 1 cut(s) 712
AsuHPI GGTGA 5 cut(s) 64, 283, 389, 709, 892
AsuII TTCGAA 1 cut(s) 120
AvaII GGWCC 2 cut(s) 947, 1063
AxyI CCTNAGG 1 cut(s) 506
BamHI GGATCC 1 cut(s) 395
BanII GRGCYC 2 cut(s) 44, 495
BarI GAAGNNNNNNTAC 2 cut(s) 296, 328
Bbv12I GWGCWC 3 cut(s) 44, 495, 870
BbvCI CCTCAGC 1 cut(s) 839
BccI CCATC 5 cut(s) 182, 617, 728, 761, 997
BceAI ACGGC 2 cut(s) 35, 1020
BciT130I CCWGG 3 cut(s) 27, 65, 375
BcnI CCSGG 1 cut(s) 712
BcoDI GTCTC 1 cut(s) 596
BcuI ACTAGT 1 cut(s) 190
BfaI CTAG 3 cut(s) 45, 191, 548
BfmI CTRYAG 1 cut(s) 752
Bme1390I CCNGG 4 cut(s) 27, 65, 375, 712
Bme18I GGWCC 2 cut(s) 947, 1063
BmgT120I GGNCC 2 cut(s) 947, 1063
BmiI GGNNCC 3 cut(s) 397, 780, 1076
BmrFI CCNGG 4 cut(s) 27, 65, 375, 712
BmrI ACTGGG 1 cut(s) 436
BmsI GCATC 4 cut(s) 14, 69, 618, 790
BmuI ACTGGG 1 cut(s) 436
BplI GAGNNNNNCTC 2 cut(s) 887, 919
BpmI CTGGAG 2 cut(s) 86, 1061
Bpu10I CCTNAGC 1 cut(s) 839
Bpu14I TTCGAA 1 cut(s) 120
BpuMI CCSGG 1 cut(s) 712
Bsa29I ATCGAT 1 cut(s) 177
BsaBI GATNNNNATC 2 cut(s) 719, 905
BsaJI CCNNGG 3 cut(s) 277, 342, 552
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse1I ACTGG 3 cut(s) 228, 431, 950
Bse21I CCTNAGG 1 cut(s) 506
Bse3DI GCAATG 1 cut(s) 850
Bse8I GATNNNNATC 2 cut(s) 719, 905
BseBI CCWGG 3 cut(s) 27, 65, 375
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 3 cut(s) 277, 342, 552
BseGI GGATG 6 cut(s) 60, 500, 633, 648, 720, 1008
BseJI GATNNNNATC 2 cut(s) 719, 905
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMI GCAATG 1 cut(s) 850
BseMII CTCAG 4 cut(s) 520, 597, 853, 879
BseNI ACTGG 3 cut(s) 228, 431, 950
BseRI GAGGAG 1 cut(s) 623
BseYI CCCAGC 1 cut(s) 12
BshFI GGCC 1 cut(s) 373
BshVI ATCGAT 1 cut(s) 177
BsiHKAI GWGCWC 3 cut(s) 44, 495, 870
BsiSI CCGG 1 cut(s) 711
BslFI GGGAC 2 cut(s) 80, 836
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 596
BsmFI GGGAC 2 cut(s) 80, 836
BsnI GGCC 1 cut(s) 373
Bsp119I TTCGAA 1 cut(s) 120
Bsp1286I GDGCHC 3 cut(s) 44, 495, 870
Bsp1407I TGTACA 1 cut(s) 852
Bsp143I GATC 7 cut(s) 69, 142, 200, 395, 714, 834, 900
Bsp19I CCATGG 2 cut(s) 277, 552
BspACI CCGC 1 cut(s) 1033
BspANI GGCC 1 cut(s) 373
BspCNI CTCAG 4 cut(s) 519, 598, 852, 880
BspDI ATCGAT 1 cut(s) 177
BspLI GGNNCC 3 cut(s) 397, 780, 1076
BspMAI CTGCAG 1 cut(s) 756
BspPI GGATC 6 cut(s) 208, 390, 403, 722, 829, 908
BspT104I TTCGAA 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 850
BsrGI TGTACA 1 cut(s) 852
BsrI ACTGG 3 cut(s) 228, 431, 950
BssECI CCNNGG 3 cut(s) 277, 342, 552
BssMI GATC 7 cut(s) 69, 142, 200, 395, 714, 834, 900
BssT1I CCWWGG 3 cut(s) 277, 342, 552
Bst2UI CCWGG 3 cut(s) 27, 65, 375
Bst4CI ACNGT 3 cut(s) 163, 987, 1011
Bst6I CTCTTC 2 cut(s) 342, 488
BstAUI TGTACA 1 cut(s) 852
BstBI TTCGAA 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 661
BstDEI CTNAG 4 cut(s) 506, 606, 839, 888
BstDSI CCRYGG 2 cut(s) 277, 552
BstF5I GGATG 6 cut(s) 60, 500, 633, 648, 720, 1008
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 7 cut(s) 72, 145, 203, 398, 717, 837, 903
BstMAI GTCTC 1 cut(s) 596
BstMBI GATC 7 cut(s) 69, 142, 200, 395, 714, 834, 900
BstMWI GCNNNNNNNGC 2 cut(s) 39, 243
BstNI CCWGG 3 cut(s) 27, 65, 375
BstNSI RCATGY 1 cut(s) 663
BstSCI CCNGG 4 cut(s) 25, 63, 373, 710
BstSFI CTRYAG 1 cut(s) 752
BstX2I RGATCY 3 cut(s) 395, 834, 900
BstYI RGATCY 3 cut(s) 395, 834, 900
Bsu15I ATCGAT 1 cut(s) 177
Bsu36I CCTNAGG 1 cut(s) 506
BsuRI GGCC 1 cut(s) 373
BsuTUI ATCGAT 1 cut(s) 177
BtgI CCRYGG 2 cut(s) 277, 552
BtsCI GGATG 6 cut(s) 60, 500, 633, 648, 720, 1008
BtsIMutI CAGTG 3 cut(s) 642, 957, 983
Cac8I GCNNGC 1 cut(s) 661
CaiI CAGNNNCTG 1 cut(s) 218
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 947, 1063
ClaI ATCGAT 1 cut(s) 177
CseI GACGC 1 cut(s) 713
Csp6I GTAC 3 cut(s) 313, 853, 1012
CviAII CATG 6 cut(s) 278, 445, 451, 553, 660, 862
CviQI GTAC 3 cut(s) 313, 853, 1012
DdeI CTNAG 4 cut(s) 506, 606, 839, 888
DpnI GATC 7 cut(s) 71, 144, 202, 397, 716, 836, 902
DpnII GATC 7 cut(s) 69, 142, 200, 395, 714, 834, 900
Eam1104I CTCTTC 2 cut(s) 342, 488
EarI CTCTTC 2 cut(s) 342, 488
Ecl136II GAGCTC 2 cut(s) 42, 493
Eco130I CCWWGG 3 cut(s) 277, 342, 552
Eco147I AGGCCT 1 cut(s) 373
Eco24I GRGCYC 2 cut(s) 44, 495
Eco47I GGWCC 2 cut(s) 947, 1063
Eco53kI GAGCTC 2 cut(s) 42, 493
Eco57I CTGAAG 4 cut(s) 111, 195, 329, 560
Eco81I CCTNAGG 1 cut(s) 506
EcoICRI GAGCTC 2 cut(s) 42, 493
EcoRI GAATTC 1 cut(s) 326
EcoRII CCWGG 3 cut(s) 25, 63, 373
EcoT14I CCWWGG 3 cut(s) 277, 342, 552
EcoT38I GRGCYC 2 cut(s) 44, 495
ErhI CCWWGG 3 cut(s) 277, 342, 552
FaeI CATG 6 cut(s) 281, 448, 454, 556, 663, 865
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 2 cut(s) 80, 836
FatI CATG 6 cut(s) 277, 444, 450, 552, 659, 861
FauI CCCGC 1 cut(s) 1040
FokI GGATG 6 cut(s) 47, 487, 640, 655, 707, 1015
FriOI GRGCYC 2 cut(s) 44, 495
FspBI CTAG 3 cut(s) 45, 191, 548
GlaI GCGC 1 cut(s) 236
GsaI CCCAGC 1 cut(s) 16
GsuI CTGGAG 2 cut(s) 86, 1061
HaeIII GGCC 1 cut(s) 373
HapII CCGG 1 cut(s) 711
HgaI GACGC 1 cut(s) 713
HhaI GCGC 1 cut(s) 237
Hin1II CATG 6 cut(s) 281, 448, 454, 556, 663, 865
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HincII GTYRAC 1 cut(s) 787
HindII GTYRAC 1 cut(s) 787
HindIII AAGCTT 2 cut(s) 207, 335
HinfI GANTC 5 cut(s) 80, 215, 258, 438, 521
HpaII CCGG 1 cut(s) 711
HphI GGTGA 5 cut(s) 64, 283, 389, 709, 892
Hpy166II GTNNAC 4 cut(s) 274, 787, 853, 883
Hpy188I TCNGA 8 cut(s) 142, 151, 205, 214, 220, 366, 703, 889
Hpy188III TCNNGA 2 cut(s) 508, 1078
Hpy8I GTNNAC 4 cut(s) 274, 787, 853, 883
Hpy99I CGWCG 1 cut(s) 1049
HpyAV CCTTC 4 cut(s) 380, 507, 526, 571
HpyCH4III ACNGT 3 cut(s) 163, 987, 1011
HpyCH4IV ACGT 4 cut(s) 108, 381, 421, 1014
HpyCH4V TGCA 5 cut(s) 246, 631, 659, 754, 818
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 243
HpyF3I CTNAG 4 cut(s) 506, 606, 839, 888
HpySE526I ACGT 4 cut(s) 108, 381, 421, 1014
Hsp92II CATG 6 cut(s) 281, 448, 454, 556, 663, 865
HspAI GCGC 1 cut(s) 235
Kzo9I GATC 7 cut(s) 69, 142, 200, 395, 714, 834, 900
LmnI GCTCC 3 cut(s) 498, 865, 1080
LweI GCATC 4 cut(s) 14, 69, 618, 790
MaeI CTAG 3 cut(s) 45, 191, 548
MaeII ACGT 4 cut(s) 108, 381, 421, 1014
MaeIII GTNAC 6 cut(s) 81, 104, 193, 377, 422, 952
MalI GATC 7 cut(s) 71, 144, 202, 397, 716, 836, 902
MboI GATC 7 cut(s) 69, 142, 200, 395, 714, 834, 900
MboII GAAGA 8 cut(s) 134, 335, 359, 475, 598, 632, 809, 910
MflI RGATCY 3 cut(s) 395, 834, 900
MhlI GDGCHC 3 cut(s) 44, 495, 870
MluCI AATT 5 cut(s) 326, 646, 929, 942, 1087
MlyI GAGTC 2 cut(s) 89, 530
MroXI GAANNNNTTC 1 cut(s) 515
MseI TTAA 4 cut(s) 333, 735, 759, 813
MslI CAYNNNNRTG 2 cut(s) 179, 449
MspI CCGG 1 cut(s) 711
MspR9I CCNGG 4 cut(s) 27, 65, 375, 712
MvaI CCWGG 3 cut(s) 27, 65, 375
MwoI GCNNNNNNNGC 2 cut(s) 39, 243
NciI CCSGG 1 cut(s) 712
NcoI CCATGG 2 cut(s) 277, 552
NdeII GATC 7 cut(s) 69, 142, 200, 395, 714, 834, 900
NlaIII CATG 6 cut(s) 281, 448, 454, 556, 663, 865
NlaIV GGNNCC 3 cut(s) 397, 780, 1076
NmuCI GTSAC 4 cut(s) 81, 377, 422, 952
NspI RCATGY 1 cut(s) 663
NspV TTCGAA 1 cut(s) 120
PaeI GCATGC 1 cut(s) 663
PceI AGGCCT 1 cut(s) 373
PdmI GAANNNNTTC 1 cut(s) 515
PfeI GAWTC 3 cut(s) 215, 258, 438
PfoI TCCNGGA 2 cut(s) 63, 710
PleI GAGTC 2 cut(s) 88, 529
PpsI GAGTC 2 cut(s) 88, 529
Psp124BI GAGCTC 2 cut(s) 44, 495
Psp6I CCWGG 3 cut(s) 25, 63, 373
PspFI CCCAGC 1 cut(s) 12
PspGI CCWGG 3 cut(s) 25, 63, 373
PspN4I GGNNCC 3 cut(s) 397, 780, 1076
PspPI GGNCC 2 cut(s) 947, 1063
PstI CTGCAG 1 cut(s) 756
PstNI CAGNNNCTG 1 cut(s) 218
PsuI RGATCY 3 cut(s) 395, 834, 900
RsaI GTAC 3 cut(s) 314, 854, 1013
RsaNI GTAC 3 cut(s) 313, 853, 1012
RseI CAYNNNNRTG 2 cut(s) 179, 449
SacI GAGCTC 2 cut(s) 44, 495
SaqAI TTAA 4 cut(s) 333, 735, 759, 813
Sau3AI GATC 7 cut(s) 69, 142, 200, 395, 714, 834, 900
Sau96I GGNCC 2 cut(s) 947, 1063
SchI GAGTC 2 cut(s) 89, 530
ScrFI CCNGG 4 cut(s) 27, 65, 375, 712
SduI GDGCHC 3 cut(s) 44, 495, 870
SfaNI GCATC 4 cut(s) 14, 69, 618, 790
SfcI CTRYAG 1 cut(s) 752
SfuI TTCGAA 1 cut(s) 120
SinI GGWCC 2 cut(s) 947, 1063
SmiMI CAYNNNNRTG 2 cut(s) 179, 449
SpeI ACTAGT 1 cut(s) 190
SphI GCATGC 1 cut(s) 663
Sse9I AATT 5 cut(s) 326, 646, 929, 942, 1087
SseBI AGGCCT 1 cut(s) 373
SsiI CCGC 1 cut(s) 1033
SspMI CTAG 3 cut(s) 45, 191, 548
SstI GAGCTC 2 cut(s) 44, 495
StuI AGGCCT 1 cut(s) 373
StyD4I CCNGG 4 cut(s) 25, 63, 373, 710
StyI CCWWGG 3 cut(s) 277, 342, 552
TaaI ACNGT 3 cut(s) 163, 987, 1011
TaiI ACGT 4 cut(s) 111, 384, 424, 1017
TaqI TCGA 5 cut(s) 120, 177, 519, 933, 1044
TasI AATT 5 cut(s) 326, 646, 929, 942, 1087
TatI WGTACW 1 cut(s) 852
TfiI GAWTC 3 cut(s) 215, 258, 438
Tru1I TTAA 4 cut(s) 333, 735, 759, 813
Tru9I TTAA 4 cut(s) 333, 735, 759, 813
TscAI CASTG 3 cut(s) 642, 957, 990
TseFI GTSAC 4 cut(s) 81, 377, 422, 952
Tsp45I GTSAC 4 cut(s) 81, 377, 422, 952
TspDTI ATGAA 6 cut(s) 126, 371, 452, 467, 489, 659
TspGWI ACGGA 2 cut(s) 101, 782
TspRI CASTG 3 cut(s) 642, 957, 990
VpaK11BI GGWCC 2 cut(s) 947, 1063
XapI RAATTY 2 cut(s) 326, 929
XceI RCATGY 1 cut(s) 663
XmnI GAANNNNTTC 1 cut(s) 515
XspI CTAG 3 cut(s) 45, 191, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.