pycom17g23160

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000789
Physical Location & Seq
Forward (+)
21563954 .. 21569382
5429 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 963 bp
ATGTCTTCCGGCGTCCGGGAGAGAGAGAGGGTGTTTGTGGAGCACTGTAAGGGCGCAAATGGCCTTGACAAGGTTGTTCTCAGAGAGGTTCGAGGCTCCTCCGCGGAGGTATATTTGTATGGGGGTCAAGTTACATCATGGAGAAATGAATATGGGGAAGATTTGCTTTTCGTTAGTAGCAAGGCTACTTATAAGTCTCCTAAGGCTATCCGTGGCGGAATCCCAATATGTTTTCCTCAATTTGGAAGTCATGGTTCTCTTGAACAACATGGATTTGCAAGGAATAGGCTTTGGAGTATTGATTACAATCCCCCGCCTTTCCCAACAAACAGCGGTAACAAGGCTTTCATTGATTTAATCCTCAAACCCTCTGAAGAGGATGCAAAGATCTGGCCTCATAGATATGAATTTCGCCTTAGGGTAACTTTGGGACCAGGAGGGGATTTGATGTTGACTTCTCGCATCCGAAATACAAACACTGATGGAAAGTCGTTTACATTCACATTTGCCTATCACACCTATCTGGCTGTAACTGATATCAGTGAAGTGCGGGTAGAAGGACTGGAGACACGGGATTATCTGGATAACCTGAAGAATAGAGAGCGATTTACGGAGCAAGGGGATGCAATAACATTTGAGTCTGAGGTGGACAAAGTTTATCTCAGCACGCCTACAAAAATTGCTATTCTGGACCATGAAAGGAAGAGAACATTTGTGTTACGGAAGGACGGGCTTCCAGATGCTGTTGTCTGGAATCCGTGGGATAAGAAAGCAAAGGCAATTACTGATTTGGGGGATGATGAGTACAAGCATATGCTGTGTGTCCAGGCTGCTTGTGTGGAAAAGCCTATTACTTTGAAACCTGGTGAAGAATGGAGAGGAAGGCAGGAACTGTCTGCTGTCCCTTCCAGTTACTGCAGTGGACAACTTGACCCACGGAAGGTACTGCTAGGCGGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

321

Amino Acids

36.22

Weight (kDa)

7.64

Isoelectric Point (pI)

28.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 24 - 298 1.4e-65 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 192
AccII CGCG 1 cut(s) 104
AciI CCGC 7 cut(s) 102, 104, 216, 314, 333, 550, 954
AcsI RAATTY 1 cut(s) 407
AcuI CTGAAG 2 cut(s) 393, 611
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 2 cut(s) 806, 945
AfiI CCNNNNNNNGG 4 cut(s) 15, 70, 242, 940
AgsI TTSAA 2 cut(s) 263, 859
AjnI CCWGG 3 cut(s) 433, 825, 862
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 2 cut(s) 201, 560
AlwNI CAGNNNCTG 3 cut(s) 743, 892, 915
AoxI GGCC 2 cut(s) 61, 392
ApeKI GCWGC 1 cut(s) 830
ApoI RAATTY 1 cut(s) 407
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 2 cut(s) 431, 691
AsuC2I CCSGG 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 878
AvaII GGWCC 2 cut(s) 431, 691
AxyI CCTNAGG 2 cut(s) 201, 416
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 817
BccI CCATC 1 cut(s) 476
BciT130I CCWGG 3 cut(s) 435, 827, 864
BcnI CCSGG 1 cut(s) 17
BcoDI GTCTC 2 cut(s) 201, 560
BfaI CTAG 1 cut(s) 950
BfmI CTRYAG 1 cut(s) 916
BglII AGATCT 1 cut(s) 387
BisI GCNGC 1 cut(s) 831
BlsI GCNGC 1 cut(s) 832
Bme1390I CCNGG 4 cut(s) 17, 435, 827, 864
Bme18I GGWCC 2 cut(s) 431, 691
BmgT120I GGNCC 2 cut(s) 431, 691
BmiI GGNNCC 2 cut(s) 97, 432
BmrFI CCNGG 4 cut(s) 17, 435, 827, 864
BmsI GCATC 4 cut(s) 370, 471, 613, 730
BpmI CTGGAG 1 cut(s) 584
BpuMI CCSGG 1 cut(s) 17
BsaBI GATNNNNATC 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 4 cut(s) 102, 211, 758, 935
Bsc4I CCNNNNNNNGG 4 cut(s) 15, 70, 242, 940
Bse1I ACTGG 2 cut(s) 567, 909
Bse21I CCTNAGG 2 cut(s) 201, 416
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 3 cut(s) 435, 827, 864
BseDI CCNNGG 4 cut(s) 102, 211, 758, 935
BseGI GGATG 4 cut(s) 385, 462, 628, 802
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 4 cut(s) 15, 70, 242, 940
BseMII CTCAG 3 cut(s) 94, 633, 676
BseNI ACTGG 2 cut(s) 567, 909
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 817
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 2 cut(s) 63, 394
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 2 cut(s) 9, 16
BslFI GGGAC 2 cut(s) 444, 887
BslI CCNNNNNNNGG 4 cut(s) 15, 70, 242, 940
BsmAI GTCTC 2 cut(s) 201, 560
BsmFI GGGAC 2 cut(s) 444, 887
BsnI GGCC 2 cut(s) 63, 394
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 387
BspACI CCGC 7 cut(s) 102, 104, 216, 314, 333, 550, 954
BspANI GGCC 2 cut(s) 63, 394
BspCNI CTCAG 3 cut(s) 93, 634, 675
BspFNI CGCG 1 cut(s) 104
BspHI TCATGA 1 cut(s) 959
BspLI GGNNCC 2 cut(s) 97, 432
BspMAI CTGCAG 1 cut(s) 920
BsrI ACTGG 2 cut(s) 567, 909
BssECI CCNNGG 4 cut(s) 102, 211, 758, 935
BssMI GATC 1 cut(s) 387
BssNI GRCGYC 1 cut(s) 12
Bst2UI CCWGG 3 cut(s) 435, 827, 864
Bst4CI ACNGT 2 cut(s) 47, 894
Bst6I CTCTTC 2 cut(s) 369, 698
BstACI GRCGYC 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 668
BstDEI CTNAG 5 cut(s) 80, 201, 416, 642, 662
BstDSI CCRYGG 4 cut(s) 102, 211, 758, 935
BstENI CCTNNNNNAGG 1 cut(s) 68
BstF5I GGATG 4 cut(s) 385, 462, 628, 802
BstFNI CGCG 1 cut(s) 104
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 1 cut(s) 390
BstMAI GTCTC 2 cut(s) 201, 560
BstMBI GATC 1 cut(s) 387
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstNI CCWGG 3 cut(s) 435, 827, 864
BstSCI CCNGG 4 cut(s) 15, 433, 825, 862
BstSFI CTRYAG 1 cut(s) 916
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 817
BstX2I RGATCY 1 cut(s) 387
BstYI RGATCY 1 cut(s) 387
Bsu36I CCTNAGG 2 cut(s) 201, 416
BsuRI GGCC 2 cut(s) 63, 394
BtgI CCRYGG 4 cut(s) 102, 211, 758, 935
BtsCI GGATG 4 cut(s) 385, 462, 628, 802
BtsI GCAGTG 1 cut(s) 925
BtsIMutI CAGTG 4 cut(s) 43, 477, 547, 925
Cac8I GCNNGC 1 cut(s) 668
CaiI CAGNNNCTG 3 cut(s) 743, 892, 915
CciI TCATGA 1 cut(s) 959
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 2 cut(s) 431, 691
Cfr42I CCGCGG 1 cut(s) 105
CsiI ACCWGGT 1 cut(s) 862
Csp6I GTAC 2 cut(s) 805, 944
CviAII CATG 5 cut(s) 138, 251, 269, 695, 960
CviQI GTAC 2 cut(s) 805, 944
DdeI CTNAG 5 cut(s) 80, 201, 416, 642, 662
DpnI GATC 1 cut(s) 389
DpnII GATC 1 cut(s) 387
Eam1104I CTCTTC 2 cut(s) 369, 698
EarI CTCTTC 2 cut(s) 369, 698
EciI GGCGGA 1 cut(s) 231
Eco32I GATATC 1 cut(s) 538
Eco47I GGWCC 2 cut(s) 431, 691
Eco57I CTGAAG 2 cut(s) 393, 611
Eco81I CCTNAGG 2 cut(s) 201, 416
EcoNI CCTNNNNNAGG 1 cut(s) 68
EcoRII CCWGG 3 cut(s) 433, 825, 862
EcoRV GATATC 1 cut(s) 538
FaeI CATG 5 cut(s) 141, 254, 272, 698, 963
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FaqI GGGAC 2 cut(s) 444, 887
FatI CATG 5 cut(s) 137, 250, 268, 694, 959
FauI CCCGC 2 cut(s) 321, 543
FauNDI CATATG 1 cut(s) 813
Fnu4HI GCNGC 1 cut(s) 831
FokI GGATG 4 cut(s) 392, 449, 635, 809
Fsp4HI GCNGC 1 cut(s) 831
FspBI CTAG 1 cut(s) 950
GlaI GCGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 831
GsuI CTGGAG 1 cut(s) 584
HaeIII GGCC 2 cut(s) 63, 394
HapII CCGG 2 cut(s) 9, 16
HhaI GCGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 5 cut(s) 141, 254, 272, 698, 963
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HinfI GANTC 3 cut(s) 219, 638, 754
HpaII CCGG 2 cut(s) 9, 16
HphI GGTGA 1 cut(s) 878
Hpy166II GTNNAC 4 cut(s) 453, 495, 649, 923
Hpy188I TCNGA 4 cut(s) 83, 373, 467, 643
Hpy188III TCNNGA 6 cut(s) 260, 581, 689, 737, 751, 960
Hpy8I GTNNAC 4 cut(s) 453, 495, 649, 923
HpyAV CCTTC 5 cut(s) 551, 718, 876, 915, 934
HpyCH4III ACNGT 2 cut(s) 47, 894
HpyCH4V TGCA 4 cut(s) 278, 383, 626, 918
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpyF3I CTNAG 5 cut(s) 80, 201, 416, 642, 662
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 5 cut(s) 141, 254, 272, 698, 963
HspAI GCGC 1 cut(s) 54
KspI CCGCGG 1 cut(s) 105
Kzo9I GATC 1 cut(s) 387
LmnI GCTCC 3 cut(s) 40, 101, 613
Lsp1109I GCAGC 1 cut(s) 817
LweI GCATC 4 cut(s) 370, 471, 613, 730
MabI ACCWGGT 1 cut(s) 862
MaeI CTAG 1 cut(s) 950
MaeIII GTNAC 6 cut(s) 130, 335, 421, 529, 717, 911
MalI GATC 1 cut(s) 389
MboI GATC 1 cut(s) 387
MboII GAAGA 5 cut(s) 170, 386, 604, 715, 881
MflI RGATCY 1 cut(s) 387
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 4 cut(s) 239, 407, 678, 780
MlyI GAGTC 1 cut(s) 647
MseI TTAA 1 cut(s) 356
MslI CAYNNNNRTG 1 cut(s) 402
MspA1I CMGCKG 2 cut(s) 104, 333
MspI CCGG 2 cut(s) 9, 16
MspR9I CCNGG 4 cut(s) 17, 435, 827, 864
MvaI CCWGG 3 cut(s) 435, 827, 864
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 60
NciI CCSGG 1 cut(s) 17
NdeI CATATG 1 cut(s) 813
NdeII GATC 1 cut(s) 387
NlaIII CATG 5 cut(s) 141, 254, 272, 698, 963
NlaIV GGNNCC 2 cut(s) 97, 432
PagI TCATGA 1 cut(s) 959
PfeI GAWTC 2 cut(s) 219, 754
PfoI TCCNGGA 1 cut(s) 15
PkrI GCNGC 1 cut(s) 832
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
PsiI TTATAA 1 cut(s) 192
Psp6I CCWGG 3 cut(s) 433, 825, 862
PspGI CCWGG 3 cut(s) 433, 825, 862
PspN4I GGNNCC 2 cut(s) 97, 432
PspPI GGNCC 2 cut(s) 431, 691
PstI CTGCAG 1 cut(s) 920
PstNI CAGNNNCTG 3 cut(s) 743, 892, 915
PsuI RGATCY 1 cut(s) 387
RsaI GTAC 2 cut(s) 806, 945
RsaNI GTAC 2 cut(s) 805, 944
RseI CAYNNNNRTG 1 cut(s) 402
SacII CCGCGG 1 cut(s) 105
SaqAI TTAA 1 cut(s) 356
SatI GCNGC 1 cut(s) 831
Sau3AI GATC 1 cut(s) 387
Sau96I GGNCC 2 cut(s) 431, 691
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 4 cut(s) 17, 435, 827, 864
SduI GDGCHC 1 cut(s) 45
SetI ASST 8 cut(s) 75, 90, 111, 521, 591, 648, 865, 945
SexAI ACCWGGT 1 cut(s) 862
SfaNI GCATC 4 cut(s) 370, 471, 613, 730
SfcI CTRYAG 1 cut(s) 916
Sfr303I CCGCGG 1 cut(s) 105
SgrBI CCGCGG 1 cut(s) 105
SinI GGWCC 2 cut(s) 431, 691
SmiMI CAYNNNNRTG 1 cut(s) 402
Sse9I AATT 4 cut(s) 239, 407, 678, 780
SsiI CCGC 7 cut(s) 102, 104, 216, 314, 333, 550, 954
SspMI CTAG 1 cut(s) 950
StyD4I CCNGG 4 cut(s) 15, 433, 825, 862
TaaI ACNGT 2 cut(s) 47, 894
TaqI TCGA 1 cut(s) 91
TasI AATT 4 cut(s) 239, 407, 678, 780
TatI WGTACW 1 cut(s) 804
TfiI GAWTC 2 cut(s) 219, 754
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TscAI CASTG 4 cut(s) 50, 484, 547, 925
TseI GCWGC 1 cut(s) 830
TspDTI ATGAA 5 cut(s) 162, 337, 420, 711, 948
TspGWI ACGGA 5 cut(s) 200, 626, 736, 747, 952
TspRI CASTG 4 cut(s) 50, 484, 547, 925
VpaK11BI GGWCC 2 cut(s) 431, 691
XagI CCTNNNNNAGG 1 cut(s) 68
XapI RAATTY 1 cut(s) 407
XspI CTAG 1 cut(s) 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.