Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000733

Physical Location & Seq

Genomic Coordinates Forward (+)

50379934 .. 50380362

Gene Structure 429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCCTTTAGGTTTTGTTGACAGGACATCAGAGAAAGGGCTTGTTTACTTTGGATGGGTGCCCCAAATGGAAATTTTGGCCCACTCATCAGTTGGGGGTTCTTTGTTTCATTCTGGATGGGGTTCTGTGATTGAGACCCTGCAATTTGGGCATTGCCTTGTTGTGTTACCCTTCATGTATAATCAGCCTTTGAATGCAAGGCTTTTGGTAAAGAAGGGTCTGGCTGCCGAAGTGAAGCGCAACGAAGACGGGTCGCTTAGTAGAGAGGAAATAGCAAAAACACTGAGGCTAGCAATGGTGGAAGAGGAAGGAGAGCACTTGAGAAGCAATGCGAGGAAAGCTGCTGCAGTTTTTGGAGATCACAAGCTGCACCAAGACCACTACATCGGTGCATTTGTCGATTATCTTAAAAATAATGTTGCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

142

Amino Acids

15.82

Weight (kDa)

6.65

Isoelectric Point (pI)

51.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	17 - 97	2.7e-10	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000733)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g05830 FvH4_7g15020 FvH4_7g15600 FvH4_7g15610 FvH4_7g15620 FvH4_7g15650
malus_domestica	MD00G1112100.v1.1 MD01G1068500.v1.1 MD01G1068700.v1.1 MD01G1068800.v1.1 MD03G1019100.v1.1
prunus_persica	Prupe.2G174700_v2.0.a1 Prupe.2G175000_v2.0.a1 Prupe.2G175000_v2.0.a1
pyrus_communis	pycom01g09780 pycom01g09790 pycom01g09820 pycom01g09840 pycom07g13020
rosa_chinensis	RchiOBHm_Chr1g0357061 RchiOBHm_Chr1g0357071 RchiOBHm_Chr1g0358281 RchiOBHm_Chr1g0358291 RchiOBHm_Chr1g0358321 RchiOBHm_Chr1g0358331
rosa_laevigata	RLG00000027973 RLG00000027974 RLG00000027975 RLG00000027976 RLG00000028053 RLG00000028054 RLG00000028055 RLG00000028057 RLG00000028153
rosa_multiflora	Rmu_sc0000166.1_g000044 Rmu_sc0000166.1_g000047 Rmu_sc0002071.1_g000024 Rmu_sc0002071.1_g000025 Rmu_sc0002144.1_g000001 Rmu_sc0013980.1_g000005 Rmu_sc0013980.1_g000013 Rmu_sc0013980.1_g000020 Rmu_sc0013980.1_g000023 Rmu_sc0016079.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298220 Rroxscaffold_4G00298250 Rroxscaffold_4G00299080
rosa_rugosa	Rorug01G0246700 Rorug01G0254000 Rorug01G0254100 Rorug01G0260600 Rorug01G0261000
rosa_samantha	Rh1AG267700 Rh1AG267800 Rh1AG268200 Rh1AG274700 Rh1BG235600 Rh1BG235700 Rh1BG235900 Rh1BG241500 Rh1CG243100 Rh1CG251700 Rh1CG251900 Rh1CG257800 Rh1DG263000 Rh1DG263100 Rh1DG263200 Rh1DG270300
rosa_wichuraiana	Rw1G023630 Rw1G023640 Rw1G023670 Rw1G024510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	72
AgsI	TTSAA	1 cut(s)	193
AluBI	AGCT	2 cut(s)	341, 367
AluI	AGCT	2 cut(s)	341, 367
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	128
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	4 cut(s)	224, 341, 344, 367
ApoI	RAATTY	1 cut(s)	72
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	1 cut(s)	79
AsuNHI	GCTAGC	1 cut(s)	289
BaeGI	GKGCMC	1 cut(s)	63
BanI	GGYRCC	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	4 cut(s)	211, 328, 331, 354
BccI	CCATC	2 cut(s)	48, 111
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	4 cut(s)	225, 342, 345, 368
BlsI	GCNGC	4 cut(s)	226, 343, 346, 369
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	60
BmtI	GCTAGC	1 cut(s)	293
BpiI	GAAGAC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	340
BsaI	GGTCTC	1 cut(s)	128
Bse3DI	GCAATG	3 cut(s)	151, 300, 334
BseGI	GGATG	2 cut(s)	59, 122
BseMI	GCAATG	3 cut(s)	151, 300, 334
BseMII	CTCAG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	63
BseXI	GCAGC	4 cut(s)	211, 328, 331, 354
BsgI	GTGCAG	1 cut(s)	353
BshFI	GGCC	1 cut(s)	80
BshNI	GGYRCC	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	318
BsmAI	GTCTC	1 cut(s)	128
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	80
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	63, 318
Bsp143I	GATC	1 cut(s)	358
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	60
BspMAI	CTGCAG	1 cut(s)	349
BspOI	GCTAGC	1 cut(s)	293
BspT107I	GGYRCC	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	128
BsrDI	GCAATG	3 cut(s)	151, 300, 334
BssMI	GATC	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	2 cut(s)	257, 284
BstF5I	GGATG	2 cut(s)	59, 122
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 338
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	63
BstV1I	GCAGC	4 cut(s)	211, 328, 331, 354
BstV2I	GAAGAC	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	59, 122
BtsIMutI	CAGTG	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	291
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	79
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	8 cut(s)	40, 80, 187, 202, 224, 289, 341, 367
CviKI_1	RGCY	8 cut(s)	40, 80, 187, 202, 224, 289, 341, 367
DdeI	CTNAG	2 cut(s)	257, 284
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	128
FaeI	CATG	1 cut(s)	178
FaiI	YATR	2 cut(s)	176, 180
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	4 cut(s)	225, 342, 345, 368
FokI	GGATG	2 cut(s)	66, 129
Fsp4HI	GCNGC	4 cut(s)	225, 342, 345, 368
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	4 cut(s)	225, 342, 345, 368
HaeIII	GGCC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
Hpy166II	GTNNAC	2 cut(s)	19, 46
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	1 cut(s)	114
Hpy8I	GTNNAC	2 cut(s)	19, 46
HpyAV	CCTTC	3 cut(s)	181, 208, 302
HpyCH4V	TGCA	6 cut(s)	142, 197, 347, 370, 392, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 338
HpyF3I	CTNAG	2 cut(s)	257, 284
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	358
LpnPI	CCDG	4 cut(s)	7, 99, 152, 206
Lsp1109I	GCAGC	4 cut(s)	211, 328, 331, 354
MaeI	CTAG	1 cut(s)	290
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	2 cut(s)	257, 314
MhlI	GDGCHC	2 cut(s)	63, 318
MluCI	AATT	3 cut(s)	72, 143, 424
MnlI	CCTC	4 cut(s)	259, 279, 298, 327
MseI	TTAA	2 cut(s)	408, 427
Mva1269I	GAATGC	1 cut(s)	199
MwoI	GCNNNNNNNGC	2 cut(s)	148, 338
NdeII	GATC	1 cut(s)	358
NheI	GCTAGC	1 cut(s)	289
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	60
PctI	GAATGC	1 cut(s)	199
PkrI	GCNGC	4 cut(s)	226, 343, 346, 369
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	349
SaqAI	TTAA	2 cut(s)	408, 427
SatI	GCNGC	4 cut(s)	225, 342, 345, 368
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	1 cut(s)	79
SduI	GDGCHC	2 cut(s)	63, 318
SetI	ASST	3 cut(s)	13, 343, 369
SfcI	CTRYAG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	319
SmoI	CTYRAG	1 cut(s)	319
Sse9I	AATT	3 cut(s)	72, 143, 424
SspMI	CTAG	1 cut(s)	290
TaqI	TCGA	1 cut(s)	399
TasI	AATT	3 cut(s)	72, 143, 424
Tru1I	TTAA	2 cut(s)	408, 427
Tru9I	TTAA	2 cut(s)	408, 427
TscAI	CASTG	1 cut(s)	288
TseI	GCWGC	4 cut(s)	224, 341, 344, 367
TspDTI	ATGAA	2 cut(s)	98, 163
TspRI	CASTG	1 cut(s)	288
XapI	RAATTY	1 cut(s)	72
XcmI	CCANNNNNNNNNTGG	1 cut(s)	89
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.