RchiOBHm_Chr0c21g0500371

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0000865
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 528 bp
ATGACATTCCCTCTTGTGGCTCCTCTATATCTTCAACGTCTATATTTGGAAGGACAGCTAGAAAGGGTACCGCGGTGGATATCTGAGCTTACTAGTCTAACAAAGATCGGTTTAAAGTGGTCAAAACTGAAGGCTAGAGATGATCCACTTCAAGCCCTTCAAGCTTTGCCTAATCTGATGGAGCTCAATTTGATTGACTATTACACAGGGGAGGAGTTGACTTTTAAAGCTCAGACGTTCAAGAAACTAATGGTATTAATCATAGAACAATTTGATGAGCTAAAGGTAGTGAAAATTGAAGATGGGGCAATGCCTCAGCTTAAGCGGTTAACCATGTGCAAGTGTCAGAATTTGAAGTCACTTCCAGAAGGAGTGGCAGGTCTTAATGCATTGAAGAAATCAGATGGAATGAGATGCCCGATGAATTCACTACAATGGTTCAAGAACGTTGTTTCAGCATATTCGAGTCATCCATTCTTAGAGATCTTCCGAAATCGGAATATTTTTCATTGCAGAAACACAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

175

Amino Acids

20.32

Weight (kDa)

9.41

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 6 - 119 5.3e-14 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 368
Acc65I GGTACC 1 cut(s) 67
AccB1I GGYRCC 1 cut(s) 67
AccII CGCG 1 cut(s) 73
AciI CCGC 3 cut(s) 71, 73, 325
AclI AACGTT 1 cut(s) 447
AclWI GGATC 1 cut(s) 137
AcsI RAATTY 2 cut(s) 349, 424
AcuI CTGAAG 1 cut(s) 149
AdeI CACNNNGTG 1 cut(s) 525
AfaI GTAC 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 16
AflII CTTAAG 1 cut(s) 320
AgsI TTSAA 8 cut(s) 35, 152, 161, 241, 299, 355, 394, 442
AhlI ACTAGT 1 cut(s) 92
AluBI AGCT 7 cut(s) 58, 88, 164, 184, 230, 280, 319
AluI AGCT 7 cut(s) 58, 88, 164, 184, 230, 280, 319
Alw21I GWGCWC 1 cut(s) 186
AlwI GGATC 1 cut(s) 137
ApoI RAATTY 2 cut(s) 349, 424
AseI ATTAAT 1 cut(s) 257
Asp718I GGTACC 1 cut(s) 67
BaeI ACNNNNGTAYC 2 cut(s) 59, 92
BanI GGYRCC 1 cut(s) 67
BanII GRGCYC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 186
BbvCI CCTCAGC 1 cut(s) 315
BccI CCATC 3 cut(s) 172, 296, 398
BcuI ACTAGT 1 cut(s) 92
BfaI CTAG 3 cut(s) 59, 93, 135
BfrI CTTAAG 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 368
BglII AGATCT 1 cut(s) 483
BmiI GGNNCC 2 cut(s) 21, 69
BmsI GCATC 1 cut(s) 404
Bpu10I CCTNAGC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 71
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse3DI GCAATG 2 cut(s) 315, 508
BseDI CCNNGG 1 cut(s) 71
BseGI GGATG 1 cut(s) 469
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMI GCAATG 2 cut(s) 315, 508
BseMII CTCAG 3 cut(s) 75, 245, 329
BseRI GAGGAG 2 cut(s) 12, 227
Bsh1236I CGCG 1 cut(s) 73
BshNI GGYRCC 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 3 cut(s) 105, 142, 483
BspACI CCGC 3 cut(s) 71, 73, 325
BspCNI CTCAG 3 cut(s) 76, 244, 328
BspFNI CGCG 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 21, 69
BspMI ACCTGC 1 cut(s) 368
BspPI GGATC 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 67
BspTI CTTAAG 1 cut(s) 320
BsrDI GCAATG 2 cut(s) 315, 508
BssECI CCNNGG 1 cut(s) 71
BssMI GATC 3 cut(s) 105, 142, 483
BstAFI CTTAAG 1 cut(s) 320
BstDEI CTNAG 4 cut(s) 84, 231, 315, 478
BstDSI CCRYGG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 469
BstFNI CGCG 1 cut(s) 73
BstKTI GATC 3 cut(s) 108, 145, 486
BstMBI GATC 3 cut(s) 105, 142, 483
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstUI CGCG 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 483
BstYI RGATCY 1 cut(s) 483
BtgI CCRYGG 1 cut(s) 71
BtsCI GGATG 1 cut(s) 469
BveI ACCTGC 1 cut(s) 368
Cfr42I CCGCGG 1 cut(s) 74
Csp6I GTAC 1 cut(s) 68
CviAII CATG 1 cut(s) 334
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 4 cut(s) 84, 231, 315, 478
DpnI GATC 3 cut(s) 107, 144, 485
DpnII GATC 3 cut(s) 105, 142, 483
DraI TTTAAA 2 cut(s) 114, 226
DraIII CACNNNGTG 1 cut(s) 525
Ecl136II GAGCTC 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 186
Eco32I GATATC 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 184
EcoRI GAATTC 1 cut(s) 424
EcoRV GATATC 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 391
EcoT38I GRGCYC 1 cut(s) 186
FaeI CATG 1 cut(s) 337
FaiI YATR 5 cut(s) 28, 43, 263, 335, 460
FatI CATG 1 cut(s) 333
FokI GGATG 1 cut(s) 456
FriOI GRGCYC 1 cut(s) 186
FspBI CTAG 3 cut(s) 59, 93, 135
Hin1II CATG 1 cut(s) 337
HincII GTYRAC 2 cut(s) 219, 330
HindII GTYRAC 2 cut(s) 219, 330
HindIII AAGCTT 1 cut(s) 162
HinfI GANTC 1 cut(s) 466
HpaI GTTAAC 1 cut(s) 330
Hpy166II GTNNAC 2 cut(s) 219, 330
Hpy188I TCNGA 7 cut(s) 85, 177, 234, 348, 403, 491, 498
Hpy188III TCNNGA 3 cut(s) 241, 365, 442
Hpy8I GTNNAC 2 cut(s) 219, 330
HpyAV CCTTC 4 cut(s) 44, 124, 167, 362
HpyCH4IV ACGT 3 cut(s) 37, 236, 447
HpyCH4V TGCA 3 cut(s) 339, 389, 513
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 4 cut(s) 84, 231, 315, 478
HpySE526I ACGT 3 cut(s) 37, 236, 447
Hsp92II CATG 1 cut(s) 337
KpnI GGTACC 1 cut(s) 71
KspAI GTTAAC 1 cut(s) 330
KspI CCGCGG 1 cut(s) 74
Kzo9I GATC 3 cut(s) 105, 142, 483
LmnI GCTCC 2 cut(s) 25, 181
LpnPI CCDG 3 cut(s) 192, 363, 378
LweI GCATC 1 cut(s) 404
MaeI CTAG 3 cut(s) 59, 93, 135
MaeII ACGT 3 cut(s) 37, 236, 447
MaeIII GTNAC 1 cut(s) 357
MalI GATC 3 cut(s) 107, 144, 485
MboI GATC 3 cut(s) 105, 142, 483
MboII GAAGA 4 cut(s) 23, 311, 406, 478
MflI RGATCY 1 cut(s) 483
MhlI GDGCHC 1 cut(s) 186
MluCI AATT 5 cut(s) 187, 269, 294, 349, 424
MlyI GAGTC 1 cut(s) 475
MnlI CCTC 4 cut(s) 21, 33, 205, 324
Mph1103I ATGCAT 1 cut(s) 391
MseI TTAA 6 cut(s) 113, 225, 257, 321, 329, 384
MslI CAYNNNNRTG 1 cut(s) 433
MspA1I CMGCKG 1 cut(s) 73
MspCI CTTAAG 1 cut(s) 320
MvnI CGCG 1 cut(s) 73
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 3 cut(s) 105, 142, 483
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 2 cut(s) 21, 69
NmuCI GTSAC 1 cut(s) 357
NsiI ATGCAT 1 cut(s) 391
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
PshBI ATTAAT 1 cut(s) 257
Psp124BI GAGCTC 1 cut(s) 186
Psp1406I AACGTT 1 cut(s) 447
PspN4I GGNNCC 2 cut(s) 21, 69
PsuI RGATCY 1 cut(s) 483
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
RseI CAYNNNNRTG 1 cut(s) 433
SacI GAGCTC 1 cut(s) 186
SacII CCGCGG 1 cut(s) 74
SaqAI TTAA 6 cut(s) 113, 225, 257, 321, 329, 384
Sau3AI GATC 3 cut(s) 105, 142, 483
SchI GAGTC 1 cut(s) 475
SduI GDGCHC 1 cut(s) 186
SfaNI GCATC 1 cut(s) 404
Sfr303I CCGCGG 1 cut(s) 74
SgrBI CCGCGG 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 433
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SpeI ACTAGT 1 cut(s) 92
Sse9I AATT 5 cut(s) 187, 269, 294, 349, 424
SsiI CCGC 3 cut(s) 71, 73, 325
SspI AATATT 1 cut(s) 502
SspMI CTAG 3 cut(s) 59, 93, 135
SstI GAGCTC 1 cut(s) 186
TaiI ACGT 3 cut(s) 40, 239, 450
TaqI TCGA 1 cut(s) 464
TasI AATT 5 cut(s) 187, 269, 294, 349, 424
Tru1I TTAA 6 cut(s) 113, 225, 257, 321, 329, 384
Tru9I TTAA 6 cut(s) 113, 225, 257, 321, 329, 384
TseFI GTSAC 1 cut(s) 357
Tsp45I GTSAC 1 cut(s) 357
TspDTI ATGAA 2 cut(s) 437, 497
Vha464I CTTAAG 1 cut(s) 320
VspI ATTAAT 1 cut(s) 257
XapI RAATTY 2 cut(s) 349, 424
XspI CTAG 3 cut(s) 59, 93, 135
Zsp2I ATGCAT 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.