RchiOBHm_Chr3g0447361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001047
Physical Location & Seq
Reverse (-)
37948 .. 38853
906 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41482

Sequence Viewer

Length: 906 bp
ATGGTCATGGCTATTGCTCGTCTGGTAGCCAATCATTCCCTTCTTGTTTTTGCTTTTGTTTTCTTGCTCGGAGCGCCGCCTTGGTGTGGGCTCCCTGTGGCTACTGATTGGGAGGGTAGTGTTGTTGTTTGGATGACTGATCGGAGGCCGAGCTCTCACGGGGTGAATCTGGTTTGGACTGAGTTGGATGGGCAAGTCTGGGTTTTGGATCGGGGTCGTCAGATTTCCGACGGTGATAAGGATTGTACAATCGCTTTGGTTGGCCCTGATGGTTCGCTGCAGCGTCGTGGTGTTGCCGGAGTGGGGTTGGCCCGACCAGTTCAGGGGATCGACCAAAGCTTGGAGGATCTTCAGGTTGTACTGGGCGCCTCCGATCAGGTTCATCCCGATCTAGGATCGGGTTTCTTCAATGATTGCGAAGGCACTGGAATGGATCTGAAATTGGATCGAGGTGATCAGGAATGGGCGCGGACTTGGGTGTCTTTCGATCCTGGAGATGGTACAGTATCATCAGCGGTGAACCAAGGTGACGGCGGCTATAGGGATGGCGGTTTCCAGGGCGACGGAGCTCCTACTTGGGCTCTATGGGCTGGTGATCGTTCTGGGGATGGGGATGCTCAACGTGGTGGCTTTTTTGGCTGTGCTGGTGATGGCCTGAAGGTGATCAGTAGGGGAGGCACCTTCTTTGCCGGCGACGGCGACGACGACATGCAACTTGGGAGCAGCCATGTTGTGGAGCAACTGGTTGTTAGGGTTTCAGAAAATTTGGGCTGTTGGGCTCAAGTATTGGGCTTAGTCTGGATTGGGATGCATTGGGGCCATATGGGCTCTGCGGTTTTATTTTTTATTTTTATTTTGGGCCTTCCTCTTTTTATACAAAAAGAGGATGGATCTATTTTAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

32.11

Weight (kDa)

4.42

Isoelectric Point (pI)

26.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 478
AccB1I GGYRCC 2 cut(s) 365, 677
AccB7I CCANNNNNTGG 2 cut(s) 340, 733
AccII CGCG 1 cut(s) 469
AciI CCGC 6 cut(s) 77, 469, 515, 534, 549, 833
AclWI GGATC 8 cut(s) 216, 335, 354, 403, 441, 453, 482, 898
AcsI RAATTY 1 cut(s) 763
AcuI CTGAAG 2 cut(s) 335, 677
AcyI GRCGYC 1 cut(s) 366
AdeI CACNNNGTG 1 cut(s) 163
AfaI GTAC 3 cut(s) 247, 360, 502
AfiI CCNNNNNNNGG 7 cut(s) 86, 303, 323, 340, 392, 497, 733
AgsI TTSAA 1 cut(s) 409
AjnI CCWGG 2 cut(s) 490, 555
AluBI AGCT 3 cut(s) 153, 339, 569
AluI AGCT 3 cut(s) 153, 339, 569
Alw21I GWGCWC 2 cut(s) 155, 571
AlwI GGATC 8 cut(s) 216, 335, 354, 403, 441, 453, 482, 898
AoxI GGCC 6 cut(s) 146, 262, 309, 652, 817, 859
ApeKI GCWGC 3 cut(s) 277, 280, 723
ApoI RAATTY 1 cut(s) 763
AspLEI GCGC 3 cut(s) 76, 368, 469
AspS9I GGNCC 4 cut(s) 263, 310, 817, 859
AsuHPI GGTGA 8 cut(s) 175, 245, 464, 529, 539, 605, 659, 673
BanI GGYRCC 2 cut(s) 365, 677
BanII GRGCYC 6 cut(s) 93, 155, 571, 583, 781, 830
Bbv12I GWGCWC 2 cut(s) 155, 571
BbvI GCAGC 3 cut(s) 264, 292, 735
BccI CCATC 7 cut(s) 182, 263, 491, 539, 602, 644, 881
BceAI ACGGC 2 cut(s) 547, 712
BciT130I CCWGG 2 cut(s) 492, 557
BclI TGATCA 2 cut(s) 454, 663
BfaI CTAG 1 cut(s) 392
BfmI CTRYAG 2 cut(s) 278, 538
BfoI RGCGCY 2 cut(s) 77, 369
BglI GCCNNNNNGGC 1 cut(s) 825
BisI GCNGC 5 cut(s) 77, 278, 281, 535, 724
BlsI GCNGC 5 cut(s) 78, 279, 282, 536, 725
Bme1390I CCNGG 2 cut(s) 492, 557
BmgT120I GGNCC 4 cut(s) 263, 310, 817, 859
BmiI GGNNCC 4 cut(s) 92, 367, 679, 818
BmrFI CCNGG 2 cut(s) 492, 557
BmrI ACTGGG 1 cut(s) 371
BmsI GCATC 2 cut(s) 604, 798
BmuI ACTGGG 1 cut(s) 371
BpmI CTGGAG 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 765
BsaHI GRCGYC 1 cut(s) 366
BsaJI CCNNGG 3 cut(s) 80, 523, 556
Bsc4I CCNNNNNNNGG 7 cut(s) 86, 303, 323, 340, 392, 497, 733
Bse118I RCCGGY 1 cut(s) 689
Bse1I ACTGG 4 cut(s) 317, 366, 430, 747
BseBI CCWGG 2 cut(s) 492, 557
BseDI CCNNGG 3 cut(s) 80, 523, 556
BseGI GGATG 8 cut(s) 138, 193, 382, 550, 613, 619, 813, 892
BseLI CCNNNNNNNGG 7 cut(s) 86, 303, 323, 340, 392, 497, 733
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 4 cut(s) 317, 366, 430, 747
BseXI GCAGC 3 cut(s) 264, 292, 735
Bsh1236I CGCG 1 cut(s) 469
BshFI GGCC 6 cut(s) 148, 264, 311, 654, 819, 861
BshNI GGYRCC 2 cut(s) 365, 677
BsiHKAI GWGCWC 2 cut(s) 155, 571
BsiSI CCGG 2 cut(s) 297, 690
BslI CCNNNNNNNGG 7 cut(s) 86, 303, 323, 340, 392, 497, 733
BsnI GGCC 6 cut(s) 148, 264, 311, 654, 819, 861
Bsp1286I GDGCHC 6 cut(s) 93, 155, 571, 583, 781, 830
Bsp1407I TGTACA 1 cut(s) 245
BspACI CCGC 6 cut(s) 77, 469, 515, 534, 549, 833
BspANI GGCC 6 cut(s) 148, 264, 311, 654, 819, 861
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 1 cut(s) 469
BspLI GGNNCC 4 cut(s) 92, 367, 679, 818
BspMAI CTGCAG 1 cut(s) 282
BspPI GGATC 8 cut(s) 216, 335, 354, 403, 441, 453, 482, 898
BspT107I GGYRCC 2 cut(s) 365, 677
BsrFI RCCGGY 1 cut(s) 689
BsrGI TGTACA 1 cut(s) 245
BsrI ACTGG 4 cut(s) 317, 366, 430, 747
BssAI RCCGGY 1 cut(s) 689
BssECI CCNNGG 3 cut(s) 80, 523, 556
BssNI GRCGYC 1 cut(s) 366
BssT1I CCWWGG 2 cut(s) 80, 523
Bst2UI CCWGG 2 cut(s) 492, 557
Bst4CI ACNGT 2 cut(s) 233, 505
BstACI GRCGYC 1 cut(s) 366
BstAUI TGTACA 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 691
BstDEI CTNAG 2 cut(s) 180, 793
BstF5I GGATG 8 cut(s) 138, 193, 382, 550, 613, 619, 813, 892
BstFNI CGCG 1 cut(s) 469
BstH2I RGCGCY 2 cut(s) 77, 369
BstHHI GCGC 3 cut(s) 76, 368, 469
BstMWI GCNNNNNNNGC 4 cut(s) 73, 587, 636, 825
BstNI CCWGG 2 cut(s) 492, 557
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 2 cut(s) 490, 555
BstSFI CTRYAG 2 cut(s) 278, 538
BstUI CGCG 1 cut(s) 469
BstV1I GCAGC 3 cut(s) 264, 292, 735
BstX2I RGATCY 3 cut(s) 346, 433, 890
BstYI RGATCY 3 cut(s) 346, 433, 890
BsuRI GGCC 6 cut(s) 148, 264, 311, 654, 819, 861
BtsCI GGATG 8 cut(s) 138, 193, 382, 550, 613, 619, 813, 892
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 1 cut(s) 691
CfoI GCGC 3 cut(s) 76, 368, 469
Cfr10I RCCGGY 1 cut(s) 689
Cfr13I GGNCC 4 cut(s) 263, 310, 817, 859
CseI GACGC 1 cut(s) 272
Csp6I GTAC 3 cut(s) 246, 359, 501
CviAII CATG 3 cut(s) 7, 709, 728
CviQI GTAC 3 cut(s) 246, 359, 501
DdeI CTNAG 2 cut(s) 180, 793
DinI GGCGCC 1 cut(s) 367
DraIII CACNNNGTG 1 cut(s) 163
DrdI GACNNNNNNGTC 1 cut(s) 478
DseDI GACNNNNNNGTC 1 cut(s) 478
Ecl136II GAGCTC 2 cut(s) 153, 569
Eco130I CCWWGG 2 cut(s) 80, 523
Eco24I GRGCYC 6 cut(s) 93, 155, 571, 583, 781, 830
Eco53kI GAGCTC 2 cut(s) 153, 569
Eco57I CTGAAG 2 cut(s) 335, 677
EcoICRI GAGCTC 2 cut(s) 153, 569
EcoRII CCWGG 2 cut(s) 490, 555
EcoT14I CCWWGG 2 cut(s) 80, 523
EcoT22I ATGCAT 1 cut(s) 813
EcoT38I GRGCYC 6 cut(s) 93, 155, 571, 583, 781, 830
EgeI GGCGCC 1 cut(s) 367
EheI GGCGCC 1 cut(s) 367
ErhI CCWWGG 2 cut(s) 80, 523
FaeI CATG 3 cut(s) 10, 712, 731
FaiI YATR 8 cut(s) 8, 540, 586, 710, 729, 822, 824, 875
FatI CATG 3 cut(s) 6, 708, 727
FauNDI CATATG 1 cut(s) 822
FbaI TGATCA 2 cut(s) 454, 663
Fnu4HI GCNGC 5 cut(s) 77, 278, 281, 535, 724
FokI GGATG 8 cut(s) 145, 200, 369, 557, 620, 626, 820, 899
FriOI GRGCYC 6 cut(s) 93, 155, 571, 583, 781, 830
Fsp4HI GCNGC 5 cut(s) 77, 278, 281, 535, 724
FspBI CTAG 1 cut(s) 392
GlaI GCGC 3 cut(s) 75, 367, 468
GluI GCNGC 5 cut(s) 77, 278, 281, 535, 724
GsuI CTGGAG 1 cut(s) 513
HaeII RGCGCY 2 cut(s) 77, 369
HaeIII GGCC 6 cut(s) 148, 264, 311, 654, 819, 861
HapII CCGG 2 cut(s) 297, 690
HgaI GACGC 1 cut(s) 272
HhaI GCGC 3 cut(s) 76, 368, 469
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 3 cut(s) 10, 712, 731
Hin6I GCGC 3 cut(s) 74, 366, 467
HinP1I GCGC 3 cut(s) 74, 366, 467
HindIII AAGCTT 1 cut(s) 337
HinfI GANTC 1 cut(s) 166
HpaII CCGG 2 cut(s) 297, 690
HphI GGTGA 8 cut(s) 175, 245, 464, 529, 539, 605, 659, 673
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 7 cut(s) 71, 144, 222, 229, 373, 438, 760
Hpy188III TCNNGA 3 cut(s) 386, 458, 799
Hpy8I GTNNAC 1 cut(s) 520
Hpy99I CGWCG 6 cut(s) 233, 288, 566, 698, 704, 707
HpyAV CCTTC 5 cut(s) 50, 413, 652, 691, 872
HpyCH4III ACNGT 2 cut(s) 233, 505
HpyCH4IV ACGT 1 cut(s) 622
HpyCH4V TGCA 3 cut(s) 280, 712, 811
HpyF10VI GCNNNNNNNGC 4 cut(s) 73, 587, 636, 825
HpyF3I CTNAG 2 cut(s) 180, 793
HpySE526I ACGT 1 cut(s) 622
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 3 cut(s) 10, 712, 731
HspAI GCGC 3 cut(s) 74, 366, 467
KasI GGCGCC 1 cut(s) 365
KroI GCCGGC 1 cut(s) 689
KroNI GCCGGC 1 cut(s) 691
Ksp22I TGATCA 2 cut(s) 454, 663
LmnI GCTCC 6 cut(s) 71, 96, 566, 574, 720, 736
Lsp1109I GCAGC 3 cut(s) 264, 292, 735
LweI GCATC 2 cut(s) 604, 798
MaeI CTAG 1 cut(s) 392
MaeII ACGT 1 cut(s) 622
MaeIII GTNAC 1 cut(s) 527
MboII GAAGA 2 cut(s) 341, 397
MflI RGATCY 3 cut(s) 346, 433, 890
MhlI GDGCHC 6 cut(s) 93, 155, 571, 583, 781, 830
MluCI AATT 2 cut(s) 440, 763
Mly113I GGCGCC 1 cut(s) 366
MmeI TCCRAC 2 cut(s) 165, 252
MnlI CCTC 8 cut(s) 106, 138, 337, 379, 443, 668, 876, 877
Mph1103I ATGCAT 1 cut(s) 813
MroNI GCCGGC 1 cut(s) 689
MseI TTAA 1 cut(s) 904
MslI CAYNNNNRTG 1 cut(s) 428
MspA1I CMGCKG 1 cut(s) 515
MspI CCGG 2 cut(s) 297, 690
MspR9I CCNGG 2 cut(s) 492, 557
MvaI CCWGG 2 cut(s) 492, 557
MvnI CGCG 1 cut(s) 469
MwoI GCNNNNNNNGC 4 cut(s) 73, 587, 636, 825
NaeI GCCGGC 1 cut(s) 691
NarI GGCGCC 1 cut(s) 366
NdeI CATATG 1 cut(s) 822
NgoMIV GCCGGC 1 cut(s) 689
NlaIII CATG 3 cut(s) 10, 712, 731
NlaIV GGNNCC 4 cut(s) 92, 367, 679, 818
NmeAIII GCCGAG 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 527
NsiI ATGCAT 1 cut(s) 813
NspI RCATGY 1 cut(s) 712
PcsI WCGNNNNNNNCGW 1 cut(s) 702
PdiI GCCGGC 1 cut(s) 691
PfeI GAWTC 1 cut(s) 166
PflMI CCANNNNNTGG 2 cut(s) 340, 733
PfoI TCCNGGA 1 cut(s) 490
PkrI GCNGC 5 cut(s) 78, 279, 282, 536, 725
PluTI GGCGCC 1 cut(s) 369
Psp124BI GAGCTC 2 cut(s) 155, 571
Psp6I CCWGG 2 cut(s) 490, 555
PspGI CCWGG 2 cut(s) 490, 555
PspN4I GGNNCC 4 cut(s) 92, 367, 679, 818
PspPI GGNCC 4 cut(s) 263, 310, 817, 859
PstI CTGCAG 1 cut(s) 282
PsuI RGATCY 3 cut(s) 346, 433, 890
RsaI GTAC 3 cut(s) 247, 360, 502
RsaNI GTAC 3 cut(s) 246, 359, 501
RseI CAYNNNNRTG 1 cut(s) 428
SacI GAGCTC 2 cut(s) 155, 571
SaqAI TTAA 1 cut(s) 904
SatI GCNGC 5 cut(s) 77, 278, 281, 535, 724
Sau96I GGNCC 4 cut(s) 263, 310, 817, 859
ScrFI CCNGG 2 cut(s) 492, 557
SduI GDGCHC 6 cut(s) 93, 155, 571, 583, 781, 830
SfaNI GCATC 2 cut(s) 604, 798
SfcI CTRYAG 2 cut(s) 278, 538
SfoI GGCGCC 1 cut(s) 367
SmiMI CAYNNNNRTG 1 cut(s) 428
SmlI CTYRAG 1 cut(s) 780
SmoI CTYRAG 1 cut(s) 780
Sse9I AATT 2 cut(s) 440, 763
SsiI CCGC 6 cut(s) 77, 469, 515, 534, 549, 833
SspDI GGCGCC 1 cut(s) 365
SspMI CTAG 1 cut(s) 392
SstI GAGCTC 2 cut(s) 155, 571
StyD4I CCNGG 2 cut(s) 490, 555
StyI CCWWGG 2 cut(s) 80, 523
TaaI ACNGT 2 cut(s) 233, 505
TaiI ACGT 1 cut(s) 625
TaqI TCGA 3 cut(s) 330, 448, 486
TasI AATT 2 cut(s) 440, 763
TatI WGTACW 2 cut(s) 245, 358
TauI GCSGC 2 cut(s) 79, 537
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 1 cut(s) 904
Tru9I TTAA 1 cut(s) 904
TscAI CASTG 1 cut(s) 430
TseFI GTSAC 1 cut(s) 527
TseI GCWGC 3 cut(s) 277, 280, 723
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 1 cut(s) 371
TspGWI ACGGA 1 cut(s) 579
TspRI CASTG 1 cut(s) 430
Van91I CCANNNNNTGG 2 cut(s) 340, 733
XapI RAATTY 1 cut(s) 763
XceI RCATGY 1 cut(s) 712
XspI CTAG 1 cut(s) 392
Zsp2I ATGCAT 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.