Rh3DG114600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001047
Physical Location & Seq
Forward (+)
9498814 .. 9500045
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG114600.1

Sequence Viewer

Length: 882 bp
ATGGCTATTGCTCGTCTGGTAGCTATTTATTTCCTTCTTGTTTTTGCTTTTGTTTTCTTGCTCGGAGCGCCGCCTTGGTGTGGGTTCCCTGTGGTTACTGATTGGGAGGGTAGTGTTGTTGTTTGGATGATTGATCGGAGGCCGAGCTCTAACGGCGTGGATCTGGTTTGGACTGAGTTGGATGGGCGAGTCTGGGTTTTGGATCGGGGTCGTCAGATTTCCGACGGTGATAGGGCTTGTACAATCGCTTTGGTTGGCCCTAGTGGTTCGCTGCAGCGTCATGGTGTTGCCGGAGTGGGGTTGGCCCGACCAGTTCAGGGGATCGATCAAAGCTTGGAGGATCTTCAGGTTGTCCTGGGCGCCTCTGATCGGGTTTATCCCGATCTAGGAACTGGTTTCTTCAATGATTGCGAAGGCACTGGAATGGATCTGAAGTCGGTTCGAGGTGATCAGGAATGGGCGCGAACTTGGGTGTCCTTCGATCCTGGAGATGGTACAGTATCGTCGGCGGTGAACCACGGTGACGGCGGCTATGGGGATGGCGGTTTTCAGGGCGATGGAGCTCCTCCTTGGGCTCTATGGGCTGGTGATCGTTCTGGGGATGGGGTTGCTCAATGTGGTGGCTTTTTTGGCTATGCTGGTGATGGCCTGAAGGTGGTCAGTAGGGGAGGCGGCGACGGCGACATGATACTTGGGAGCGGCCATGTTGTGGAGCAGTTGGTTGTTAGGGTTTCAGAAAATTTGGGCTGTTGGGCTCAAGTATTGGGCTTAGTCTGGATGGGGATGCCTTGGGGCCATATGGGCTCTGAGGTTTTATTTTTTATTTTAATTTTGGGCCTTCCTCTTTTTATACAAAAAGAGGATGGACCTATTTTAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

31.16

Weight (kDa)

4.43

Isoelectric Point (pI)

31.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 709
AccBSI CCGCTC 1 cut(s) 699
AccII CGCG 1 cut(s) 463
AciI CCGC 6 cut(s) 71, 509, 528, 543, 672, 699
AclWI GGATC 6 cut(s) 168, 210, 329, 348, 435, 476
AcoI YGGCCR 1 cut(s) 700
AcsI RAATTY 1 cut(s) 739
AcuI CTGAAG 3 cut(s) 329, 452, 671
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 2 cut(s) 241, 496
AfiI CCNNNNNNNGG 8 cut(s) 80, 297, 317, 369, 386, 491, 655, 709
AgsI TTSAA 1 cut(s) 403
AjnI CCWGG 2 cut(s) 354, 484
AluBI AGCT 4 cut(s) 23, 147, 333, 563
AluI AGCT 4 cut(s) 23, 147, 333, 563
Alw21I GWGCWC 2 cut(s) 149, 565
AlwI GGATC 6 cut(s) 168, 210, 329, 348, 435, 476
AoxI GGCC 7 cut(s) 140, 256, 303, 646, 700, 793, 835
ApeKI GCWGC 2 cut(s) 271, 274
ApoI RAATTY 1 cut(s) 739
AspLEI GCGC 3 cut(s) 70, 362, 463
AspS9I GGNCC 5 cut(s) 257, 304, 793, 835, 866
AsuHPI GGTGA 6 cut(s) 239, 458, 523, 533, 599, 653
AvaII GGWCC 1 cut(s) 866
BanI GGYRCC 1 cut(s) 359
BanII GRGCYC 5 cut(s) 149, 565, 577, 757, 806
Bbv12I GWGCWC 2 cut(s) 149, 565
BbvI GCAGC 2 cut(s) 258, 286
BccI CCATC 8 cut(s) 176, 485, 533, 551, 596, 638, 772, 857
BceAI ACGGC 3 cut(s) 169, 541, 694
BciT130I CCWGG 2 cut(s) 356, 486
BclI TGATCA 1 cut(s) 448
BfaI CTAG 2 cut(s) 261, 386
BfmI CTRYAG 1 cut(s) 272
BfoI RGCGCY 2 cut(s) 71, 363
BglI GCCNNNNNGGC 1 cut(s) 801
BisI GCNGC 6 cut(s) 71, 272, 275, 529, 673, 700
BlsI GCNGC 6 cut(s) 72, 273, 276, 530, 674, 701
Bme1390I CCNGG 2 cut(s) 356, 486
Bme18I GGWCC 1 cut(s) 866
BmgT120I GGNCC 5 cut(s) 257, 304, 793, 835, 866
BmiI GGNNCC 3 cut(s) 86, 361, 794
BmrFI CCNGG 2 cut(s) 356, 486
BmsI GCATC 1 cut(s) 774
BpmI CTGGAG 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 741
Bsa29I ATCGAT 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 5 cut(s) 74, 355, 517, 569, 788
Bsc4I CCNNNNNNNGG 8 cut(s) 80, 297, 317, 369, 386, 491, 655, 709
Bse1I ACTGG 3 cut(s) 311, 397, 424
BseBI CCWGG 2 cut(s) 356, 486
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 5 cut(s) 74, 355, 517, 569, 788
BseGI GGATG 7 cut(s) 132, 187, 544, 607, 783, 789, 868
BseLI CCNNNNNNNGG 8 cut(s) 80, 297, 317, 369, 386, 491, 655, 709
BseMII CTCAG 2 cut(s) 165, 798
BseNI ACTGG 3 cut(s) 311, 397, 424
BseRI GAGGAG 1 cut(s) 555
BseXI GCAGC 2 cut(s) 258, 286
Bsh1236I CGCG 1 cut(s) 463
BshFI GGCC 7 cut(s) 142, 258, 305, 648, 702, 795, 837
BshNI GGYRCC 1 cut(s) 359
BshVI ATCGAT 1 cut(s) 324
BsiHKAI GWGCWC 2 cut(s) 149, 565
BsiSI CCGG 1 cut(s) 291
BslI CCNNNNNNNGG 8 cut(s) 80, 297, 317, 369, 386, 491, 655, 709
BsnI GGCC 7 cut(s) 142, 258, 305, 648, 702, 795, 837
Bsp1286I GDGCHC 5 cut(s) 149, 565, 577, 757, 806
Bsp1407I TGTACA 1 cut(s) 239
BspACI CCGC 6 cut(s) 71, 509, 528, 543, 672, 699
BspANI GGCC 7 cut(s) 142, 258, 305, 648, 702, 795, 837
BspCNI CTCAG 2 cut(s) 166, 799
BspDI ATCGAT 1 cut(s) 324
BspFNI CGCG 1 cut(s) 463
BspLI GGNNCC 3 cut(s) 86, 361, 794
BspMAI CTGCAG 1 cut(s) 276
BspPI GGATC 6 cut(s) 168, 210, 329, 348, 435, 476
BspT107I GGYRCC 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 699
BsrGI TGTACA 1 cut(s) 239
BsrI ACTGG 3 cut(s) 311, 397, 424
BssECI CCNNGG 5 cut(s) 74, 355, 517, 569, 788
BssNI GRCGYC 1 cut(s) 360
BssT1I CCWWGG 3 cut(s) 74, 569, 788
Bst2UI CCWGG 2 cut(s) 356, 486
Bst4CI ACNGT 3 cut(s) 227, 499, 521
BstACI GRCGYC 1 cut(s) 360
BstAUI TGTACA 1 cut(s) 239
BstDEI CTNAG 3 cut(s) 174, 769, 807
BstDSI CCRYGG 1 cut(s) 517
BstF5I GGATG 7 cut(s) 132, 187, 544, 607, 783, 789, 868
BstFNI CGCG 1 cut(s) 463
BstH2I RGCGCY 2 cut(s) 71, 363
BstHHI GCGC 3 cut(s) 70, 362, 463
BstMWI GCNNNNNNNGC 6 cut(s) 67, 153, 581, 630, 678, 801
BstNI CCWGG 2 cut(s) 356, 486
BstSCI CCNGG 2 cut(s) 354, 484
BstSFI CTRYAG 1 cut(s) 272
BstUI CGCG 1 cut(s) 463
BstV1I GCAGC 2 cut(s) 258, 286
BstX2I RGATCY 3 cut(s) 160, 340, 427
BstYI RGATCY 3 cut(s) 160, 340, 427
Bsu15I ATCGAT 1 cut(s) 324
BsuRI GGCC 7 cut(s) 142, 258, 305, 648, 702, 795, 837
BsuTUI ATCGAT 1 cut(s) 324
BtgI CCRYGG 1 cut(s) 517
BtgZI GCGATG 1 cut(s) 570
BtsCI GGATG 7 cut(s) 132, 187, 544, 607, 783, 789, 868
BtsIMutI CAGTG 1 cut(s) 417
CfoI GCGC 3 cut(s) 70, 362, 463
Cfr13I GGNCC 5 cut(s) 257, 304, 793, 835, 866
ClaI ATCGAT 1 cut(s) 324
CseI GACGC 1 cut(s) 266
Csp6I GTAC 2 cut(s) 240, 495
CviAII CATG 3 cut(s) 281, 685, 704
CviQI GTAC 2 cut(s) 240, 495
DdeI CTNAG 3 cut(s) 174, 769, 807
DinI GGCGCC 1 cut(s) 361
EaeI YGGCCR 1 cut(s) 700
Ecl136II GAGCTC 2 cut(s) 147, 563
Eco130I CCWWGG 3 cut(s) 74, 569, 788
Eco24I GRGCYC 5 cut(s) 149, 565, 577, 757, 806
Eco47I GGWCC 1 cut(s) 866
Eco53kI GAGCTC 2 cut(s) 147, 563
Eco57I CTGAAG 3 cut(s) 329, 452, 671
EcoICRI GAGCTC 2 cut(s) 147, 563
EcoRII CCWGG 2 cut(s) 354, 484
EcoT14I CCWWGG 3 cut(s) 74, 569, 788
EcoT38I GRGCYC 5 cut(s) 149, 565, 577, 757, 806
EgeI GGCGCC 1 cut(s) 361
EheI GGCGCC 1 cut(s) 361
ErhI CCWWGG 3 cut(s) 74, 569, 788
FaeI CATG 3 cut(s) 284, 688, 707
FaiI YATR 9 cut(s) 282, 534, 580, 636, 686, 705, 798, 800, 851
FatI CATG 3 cut(s) 280, 684, 703
FauNDI CATATG 1 cut(s) 798
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 6 cut(s) 71, 272, 275, 529, 673, 700
FokI GGATG 7 cut(s) 139, 194, 551, 614, 790, 796, 875
FriOI GRGCYC 5 cut(s) 149, 565, 577, 757, 806
Fsp4HI GCNGC 6 cut(s) 71, 272, 275, 529, 673, 700
FspBI CTAG 2 cut(s) 261, 386
GlaI GCGC 3 cut(s) 69, 361, 462
GluI GCNGC 6 cut(s) 71, 272, 275, 529, 673, 700
GsuI CTGGAG 1 cut(s) 507
HaeII RGCGCY 2 cut(s) 71, 363
HaeIII GGCC 7 cut(s) 142, 258, 305, 648, 702, 795, 837
HapII CCGG 1 cut(s) 291
HgaI GACGC 1 cut(s) 266
HhaI GCGC 3 cut(s) 70, 362, 463
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 3 cut(s) 284, 688, 707
Hin6I GCGC 3 cut(s) 68, 360, 461
HinP1I GCGC 3 cut(s) 68, 360, 461
HindIII AAGCTT 1 cut(s) 331
HinfI GANTC 1 cut(s) 189
HpaII CCGG 1 cut(s) 291
HphI GGTGA 6 cut(s) 239, 458, 523, 533, 599, 653
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 8 cut(s) 65, 138, 216, 223, 367, 432, 736, 808
Hpy188III TCNNGA 3 cut(s) 380, 452, 775
Hpy8I GTNNAC 1 cut(s) 514
Hpy99I CGWCG 3 cut(s) 227, 508, 680
HpyAV CCTTC 5 cut(s) 44, 407, 487, 646, 848
HpyCH4III ACNGT 3 cut(s) 227, 499, 521
HpyCH4V TGCA 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 6 cut(s) 67, 153, 581, 630, 678, 801
HpyF3I CTNAG 3 cut(s) 174, 769, 807
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 3 cut(s) 284, 688, 707
HspAI GCGC 3 cut(s) 68, 360, 461
KasI GGCGCC 1 cut(s) 359
Ksp22I TGATCA 1 cut(s) 448
LmnI GCTCC 5 cut(s) 65, 560, 568, 696, 712
Lsp1109I GCAGC 2 cut(s) 258, 286
LweI GCATC 1 cut(s) 774
MaeI CTAG 2 cut(s) 261, 386
MaeIII GTNAC 2 cut(s) 94, 521
MbiI CCGCTC 1 cut(s) 699
MboII GAAGA 2 cut(s) 335, 391
MflI RGATCY 3 cut(s) 160, 340, 427
MhlI GDGCHC 5 cut(s) 149, 565, 577, 757, 806
MluCI AATT 2 cut(s) 739, 828
Mly113I GGCGCC 1 cut(s) 360
MlyI GAGTC 1 cut(s) 198
MmeI TCCRAC 2 cut(s) 159, 246
MseI TTAA 2 cut(s) 827, 880
MslI CAYNNNNRTG 1 cut(s) 422
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 2 cut(s) 356, 486
MvaI CCWGG 2 cut(s) 356, 486
MvnI CGCG 1 cut(s) 463
MwoI GCNNNNNNNGC 6 cut(s) 67, 153, 581, 630, 678, 801
NarI GGCGCC 1 cut(s) 360
NdeI CATATG 1 cut(s) 798
NlaIII CATG 3 cut(s) 284, 688, 707
NlaIV GGNNCC 3 cut(s) 86, 361, 794
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 521
PflMI CCANNNNNTGG 1 cut(s) 709
PfoI TCCNGGA 1 cut(s) 484
PkrI GCNGC 6 cut(s) 72, 273, 276, 530, 674, 701
PleI GAGTC 1 cut(s) 197
PluTI GGCGCC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 197
Psp124BI GAGCTC 2 cut(s) 149, 565
Psp6I CCWGG 2 cut(s) 354, 484
PspGI CCWGG 2 cut(s) 354, 484
PspN4I GGNNCC 3 cut(s) 86, 361, 794
PspPI GGNCC 5 cut(s) 257, 304, 793, 835, 866
PstI CTGCAG 1 cut(s) 276
PsuI RGATCY 3 cut(s) 160, 340, 427
RsaI GTAC 2 cut(s) 241, 496
RsaNI GTAC 2 cut(s) 240, 495
RseI CAYNNNNRTG 1 cut(s) 422
SacI GAGCTC 2 cut(s) 149, 565
SaqAI TTAA 2 cut(s) 827, 880
SatI GCNGC 6 cut(s) 71, 272, 275, 529, 673, 700
Sau96I GGNCC 5 cut(s) 257, 304, 793, 835, 866
SchI GAGTC 1 cut(s) 198
ScrFI CCNGG 2 cut(s) 356, 486
SduI GDGCHC 5 cut(s) 149, 565, 577, 757, 806
SetI ASST 9 cut(s) 25, 149, 335, 351, 448, 565, 657, 813, 871
SfaNI GCATC 1 cut(s) 774
SfcI CTRYAG 1 cut(s) 272
SfoI GGCGCC 1 cut(s) 361
SinI GGWCC 1 cut(s) 866
SmiMI CAYNNNNRTG 1 cut(s) 422
SmlI CTYRAG 1 cut(s) 756
SmoI CTYRAG 1 cut(s) 756
Sse9I AATT 2 cut(s) 739, 828
SsiI CCGC 6 cut(s) 71, 509, 528, 543, 672, 699
SspDI GGCGCC 1 cut(s) 359
SspMI CTAG 2 cut(s) 261, 386
SstI GAGCTC 2 cut(s) 149, 565
StyD4I CCNGG 2 cut(s) 354, 484
StyI CCWWGG 3 cut(s) 74, 569, 788
TaaI ACNGT 3 cut(s) 227, 499, 521
TaqI TCGA 3 cut(s) 324, 442, 480
TasI AATT 2 cut(s) 739, 828
TatI WGTACW 1 cut(s) 239
TauI GCSGC 4 cut(s) 73, 531, 675, 702
Tru1I TTAA 2 cut(s) 827, 880
Tru9I TTAA 2 cut(s) 827, 880
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 521
TseI GCWGC 2 cut(s) 271, 274
Tsp45I GTSAC 1 cut(s) 521
TspRI CASTG 1 cut(s) 424
Van91I CCANNNNNTGG 1 cut(s) 709
VpaK11BI GGWCC 1 cut(s) 866
XapI RAATTY 1 cut(s) 739
XspI CTAG 2 cut(s) 261, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.