Rh2CG090200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001047
Physical Location & Seq
Forward (+)
7424966 .. 7426679
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG090200.1

Sequence Viewer

Length: 630 bp
ATGGTCATGGCTACTGCTCATCTGGTAGCTAATCGTTTCTTTCTTGGTTTTGTTTTTGCTTTCTTGCTCGGAGCGCCGCCTTGGTATGGGCTCCCTGTGGTTACTGTTTGGGAGGGTAGTGTTGCTGTTTGGATGGCTGATCGGAGGCCGAACTCTAATGGCGTGGTTCTGGTTTGGCCTAAGGTGGATGGGCGCATCTGGGTTTTGGATCGGGGTCGTCTGCCTTCCGAAGGTGATATCGATTGTACAATCGATTTGGTTGGCCCTGGTGGTTCGCTGCATCGTCGTAGTGTTGCCAGAGTGGGGTTGGCCGGACCAGTTCAGGGGATCGATCAAAGCTTGGAGGATCTTCAGGTTGATAGTGATGCTGGATCTGCTCTTGATTCGTCGATTGATGGTGGTGGTAGCGACCGACGCGGTGGCCAGATTGCTTCTGTTGGCGGTGGGGGTTGTCTCTGGTTCATGAAGGCAGAGTATCTGGTCTTCGATGGTGGAGGTGGTACTTTGTCTGGAGGCGGTGACGGTTTCTGGGTGGAATCTGATCCCCTTGGGGTTGTGACCCACGGCGGTGGCGGTGATAGCTTGCACGGCTGTGATGGACTAGTCTTGATCATAATTGTTGATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

21.63

Weight (kDa)

4.53

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 417
AciI CCGC 6 cut(s) 77, 417, 441, 516, 567, 573
AclWI GGATC 5 cut(s) 216, 335, 354, 379, 536
AcoI YGGCCR 2 cut(s) 309, 421
AcuI CTGAAG 1 cut(s) 335
AfaI GTAC 2 cut(s) 247, 502
AfiI CCNNNNNNNGG 4 cut(s) 86, 230, 303, 323
AhlI ACTAGT 1 cut(s) 601
AjnI CCWGG 1 cut(s) 265
AleI CACNNNNGTG 2 cut(s) 567, 591
AluBI AGCT 3 cut(s) 29, 339, 582
AluI AGCT 3 cut(s) 29, 339, 582
Alw26I GTCTC 1 cut(s) 458
AlwI GGATC 5 cut(s) 216, 335, 354, 379, 536
AoxI GGCC 5 cut(s) 146, 176, 262, 309, 421
ApeKI GCWGC 1 cut(s) 277
AspLEI GCGC 2 cut(s) 76, 195
AspS9I GGNCC 2 cut(s) 263, 314
AsuHPI GGTGA 3 cut(s) 245, 530, 587
AvaII GGWCC 1 cut(s) 314
AxyI CCTNAGG 1 cut(s) 180
BalI TGGCCA 1 cut(s) 423
BanII GRGCYC 1 cut(s) 93
BarI GAAGNNNNNNTAC 2 cut(s) 467, 499
BbsI GAAGAC 1 cut(s) 475
BbvI GCAGC 1 cut(s) 264
BccI CCATC 6 cut(s) 127, 182, 389, 482, 590, 617
BceAI ACGGC 2 cut(s) 580, 604
BciT130I CCWGG 1 cut(s) 267
BclI TGATCA 1 cut(s) 609
BcoDI GTCTC 1 cut(s) 458
BcuI ACTAGT 1 cut(s) 601
BfaI CTAG 1 cut(s) 602
BfoI RGCGCY 1 cut(s) 77
BisI GCNGC 2 cut(s) 77, 278
BlsI GCNGC 2 cut(s) 78, 279
Bme1390I CCNGG 1 cut(s) 267
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 2 cut(s) 263, 314
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 3 cut(s) 204, 289, 355
BpiI GAAGAC 1 cut(s) 475
BpmI CTGGAG 1 cut(s) 531
Bsa29I ATCGAT 3 cut(s) 240, 252, 330
BsaJI CCNNGG 4 cut(s) 80, 265, 547, 562
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 230, 303, 323
Bse1I ACTGG 1 cut(s) 317
Bse21I CCTNAGG 1 cut(s) 180
BseBI CCWGG 1 cut(s) 267
BseCI ATCGAT 3 cut(s) 240, 252, 330
BseDI CCNNGG 4 cut(s) 80, 265, 547, 562
BseGI GGATG 2 cut(s) 138, 193
BseLI CCNNNNNNNGG 4 cut(s) 86, 230, 303, 323
BseNI ACTGG 1 cut(s) 317
BseXI GCAGC 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 417
Bsh1285I CGRYCG 1 cut(s) 412
BshFI GGCC 5 cut(s) 148, 178, 264, 311, 423
BshVI ATCGAT 3 cut(s) 240, 252, 330
BsiEI CGRYCG 1 cut(s) 412
BsiSI CCGG 1 cut(s) 312
BslI CCNNNNNNNGG 4 cut(s) 86, 230, 303, 323
BsmAI GTCTC 1 cut(s) 458
BsnI GGCC 5 cut(s) 148, 178, 264, 311, 423
Bsp1286I GDGCHC 1 cut(s) 93
Bsp1407I TGTACA 1 cut(s) 245
Bsp143I GATC 8 cut(s) 139, 208, 327, 331, 346, 371, 541, 609
BspACI CCGC 6 cut(s) 77, 417, 441, 516, 567, 573
BspANI GGCC 5 cut(s) 148, 178, 264, 311, 423
BspDI ATCGAT 3 cut(s) 240, 252, 330
BspFNI CGCG 1 cut(s) 417
BspHI TCATGA 1 cut(s) 462
BspLI GGNNCC 1 cut(s) 92
BspPI GGATC 5 cut(s) 216, 335, 354, 379, 536
BsrGI TGTACA 1 cut(s) 245
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 4 cut(s) 80, 265, 547, 562
BssMI GATC 8 cut(s) 139, 208, 327, 331, 346, 371, 541, 609
BssT1I CCWWGG 2 cut(s) 80, 547
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 106, 524
BstAUI TGTACA 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 584
BstDEI CTNAG 1 cut(s) 180
BstDSI CCRYGG 1 cut(s) 562
BstENI CCTNNNNNAGG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 138, 193
BstFNI CGCG 1 cut(s) 417
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 2 cut(s) 76, 195
BstKTI GATC 8 cut(s) 142, 211, 330, 334, 349, 374, 544, 612
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 8 cut(s) 139, 208, 327, 331, 346, 371, 541, 609
BstMCI CGRYCG 1 cut(s) 412
BstMWI GCNNNNNNNGC 5 cut(s) 73, 374, 414, 579, 588
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BstUI CGCG 1 cut(s) 417
BstV1I GCAGC 1 cut(s) 264
BstV2I GAAGAC 1 cut(s) 475
BstX2I RGATCY 2 cut(s) 346, 371
BstXI CCANNNNNNTGG 1 cut(s) 569
BstYI RGATCY 2 cut(s) 346, 371
Bsu15I ATCGAT 3 cut(s) 240, 252, 330
Bsu36I CCTNAGG 1 cut(s) 180
BsuRI GGCC 5 cut(s) 148, 178, 264, 311, 423
BsuTUI ATCGAT 3 cut(s) 240, 252, 330
BtgI CCRYGG 1 cut(s) 562
BtsCI GGATG 2 cut(s) 138, 193
Cac8I GCNNGC 1 cut(s) 584
CciI TCATGA 1 cut(s) 462
CfoI GCGC 2 cut(s) 76, 195
Cfr13I GGNCC 2 cut(s) 263, 314
ClaI ATCGAT 3 cut(s) 240, 252, 330
CseI GACGC 1 cut(s) 423
Csp6I GTAC 2 cut(s) 246, 501
CviAII CATG 2 cut(s) 7, 463
CviQI GTAC 2 cut(s) 246, 501
DdeI CTNAG 1 cut(s) 180
DpnI GATC 8 cut(s) 141, 210, 329, 333, 348, 373, 543, 611
DpnII GATC 8 cut(s) 139, 208, 327, 331, 346, 371, 541, 609
EaeI YGGCCR 2 cut(s) 309, 421
Eco130I CCWWGG 2 cut(s) 80, 547
Eco24I GRGCYC 1 cut(s) 93
Eco32I GATATC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 335
Eco81I CCTNAGG 1 cut(s) 180
EcoNI CCTNNNNNAGG 1 cut(s) 228
EcoRII CCWGG 1 cut(s) 265
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 2 cut(s) 80, 547
EcoT38I GRGCYC 1 cut(s) 93
ErhI CCWWGG 2 cut(s) 80, 547
FaeI CATG 2 cut(s) 10, 466
FaiI YATR 4 cut(s) 8, 87, 464, 614
FatI CATG 2 cut(s) 6, 462
FbaI TGATCA 1 cut(s) 609
Fnu4HI GCNGC 2 cut(s) 77, 278
FokI GGATG 2 cut(s) 145, 200
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 2 cut(s) 77, 278
FspBI CTAG 1 cut(s) 602
GlaI GCGC 2 cut(s) 75, 194
GluI GCNGC 2 cut(s) 77, 278
GsuI CTGGAG 1 cut(s) 531
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 5 cut(s) 148, 178, 264, 311, 423
HapII CCGG 1 cut(s) 312
HgaI GACGC 1 cut(s) 423
HhaI GCGC 2 cut(s) 76, 195
Hin1II CATG 2 cut(s) 10, 466
Hin6I GCGC 2 cut(s) 74, 193
HinP1I GCGC 2 cut(s) 74, 193
HindIII AAGCTT 1 cut(s) 337
HinfI GANTC 2 cut(s) 383, 536
HpaII CCGG 1 cut(s) 312
HphI GGTGA 3 cut(s) 245, 530, 587
Hpy188I TCNGA 4 cut(s) 71, 144, 229, 541
Hpy188III TCNNGA 4 cut(s) 380, 463, 510, 607
Hpy99I CGWCG 3 cut(s) 288, 391, 417
HpyAV CCTTC 3 cut(s) 224, 234, 460
HpyCH4III ACNGT 2 cut(s) 106, 524
HpyCH4V TGCA 2 cut(s) 280, 586
HpyF10VI GCNNNNNNNGC 5 cut(s) 73, 374, 414, 579, 588
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 2 cut(s) 10, 466
HspAI GCGC 2 cut(s) 74, 193
Ksp22I TGATCA 1 cut(s) 609
Kzo9I GATC 8 cut(s) 139, 208, 327, 331, 346, 371, 541, 609
LmnI GCTCC 2 cut(s) 71, 96
Lsp1109I GCAGC 1 cut(s) 264
LweI GCATC 3 cut(s) 204, 289, 355
MaeI CTAG 1 cut(s) 602
MaeIII GTNAC 3 cut(s) 100, 518, 556
MalI GATC 8 cut(s) 141, 210, 329, 333, 348, 373, 543, 611
MboI GATC 8 cut(s) 139, 208, 327, 331, 346, 371, 541, 609
MboII GAAGA 2 cut(s) 341, 475
MflI RGATCY 2 cut(s) 346, 371
MhlI GDGCHC 1 cut(s) 93
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 1 cut(s) 615
MluNI TGGCCA 1 cut(s) 423
MnlI CCTC 5 cut(s) 106, 138, 337, 488, 506
Mox20I TGGCCA 1 cut(s) 423
MscI TGGCCA 1 cut(s) 423
MslI CAYNNNNRTG 2 cut(s) 567, 591
Msp20I TGGCCA 1 cut(s) 423
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 267
MvnI CGCG 1 cut(s) 417
MwoI GCNNNNNNNGC 5 cut(s) 73, 374, 414, 579, 588
NdeII GATC 8 cut(s) 139, 208, 327, 331, 346, 371, 541, 609
NlaIII CATG 2 cut(s) 10, 466
NlaIV GGNNCC 1 cut(s) 92
NmuCI GTSAC 2 cut(s) 518, 556
OliI CACNNNNGTG 2 cut(s) 567, 591
PagI TCATGA 1 cut(s) 462
PfeI GAWTC 2 cut(s) 383, 536
PkrI GCNGC 2 cut(s) 78, 279
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 2 cut(s) 263, 314
PsuI RGATCY 2 cut(s) 346, 371
RsaI GTAC 2 cut(s) 247, 502
RsaNI GTAC 2 cut(s) 246, 501
RseI CAYNNNNRTG 2 cut(s) 567, 591
SatI GCNGC 2 cut(s) 77, 278
Sau3AI GATC 8 cut(s) 139, 208, 327, 331, 346, 371, 541, 609
Sau96I GGNCC 2 cut(s) 263, 314
ScrFI CCNGG 1 cut(s) 267
SduI GDGCHC 1 cut(s) 93
SetI ASST 7 cut(s) 31, 186, 235, 341, 357, 499, 584
SfaNI GCATC 3 cut(s) 204, 289, 355
SinI GGWCC 1 cut(s) 314
SmiMI CAYNNNNRTG 2 cut(s) 567, 591
SpeI ACTAGT 1 cut(s) 601
Sse9I AATT 1 cut(s) 615
SsiI CCGC 6 cut(s) 77, 417, 441, 516, 567, 573
SspMI CTAG 1 cut(s) 602
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 2 cut(s) 80, 547
TaaI ACNGT 2 cut(s) 106, 524
TaqI TCGA 5 cut(s) 240, 252, 330, 389, 486
TaqII GACCGA 1 cut(s) 426
TasI AATT 1 cut(s) 615
TatI WGTACW 1 cut(s) 245
TauI GCSGC 1 cut(s) 79
TfiI GAWTC 2 cut(s) 383, 536
TseFI GTSAC 2 cut(s) 518, 556
TseI GCWGC 1 cut(s) 277
Tsp45I GTSAC 2 cut(s) 518, 556
TspDTI ATGAA 2 cut(s) 451, 479
VpaK11BI GGWCC 1 cut(s) 314
XagI CCTNNNNNAGG 1 cut(s) 228
XcmI CCANNNNNNNNNTGG 1 cut(s) 304
XspI CTAG 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.