Rh4CG412200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001047
Physical Location & Seq
Forward (+)
65739675 .. 65740346
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG412200.1

Sequence Viewer

Length: 672 bp
ATGGCTCTGACTCTCTCAAGAGAGAAATATCGTCGTCTCCTCTCTTCGGCGGGCGGTGGCGACAAACCTTCTCGCTTGCTTCTCTATTCTTATGACAGCGGCGATAAATCTCTTCGTCTTCCTCTATCTTCGGTTTGGGGAGGCGATTTTGCTGATGTTGGTGGGATTGGGATTGGAATCGTGATCGTTCAGATCTGGTTTGGTAGTCCTGTTGATAGTGATGATGGATCTGCTCTTGATCCGTTGATTGATGGTGGTGGTAGTGACCGACGCGGTGGCCAGATTGCTTCTGTTGGCGGTGGTAATAAGGCTTGGTGGCAGGCTGATCGTTTCGTTTTCTGCTCCATCTTCTCGTTGTATTCAGACGATGGTGGTGGTGCAGGGGGTTGTCTCTGGTTCATGACGGAGGAGTATTTGGTCTTCAATGGTGGAGGTGGTACTTTGTCTGGAGGCGGCGGCGGTTTCTGGCTGGAATCTGATCCTCTTGGGGTTGTGACCCACGGTGGCGGCGACGGCAGTTTGCACGGCTGTGATGGAGTGCGTGAGGTGCCCTTACCAATTTCGCCCTACTGGGCCAGCTGGGATGACGGCGAAGGCAAAATTGTTGGGGAGGCCAGGGTTTCTCCTAAACTAGCTTGCTGGGCTCTAGGGTTTACCCAACTTGGGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

23.19

Weight (kDa)

4.52

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 547
AccII CGCG 1 cut(s) 273
AciI CCGC 9 cut(s) 50, 54, 99, 273, 297, 453, 456, 459, 507
AclWI GGATC 3 cut(s) 233, 235, 473
AcoI YGGCCR 1 cut(s) 277
AfaI GTAC 1 cut(s) 439
AfiI CCNNNNNNNGG 2 cut(s) 46, 663
AgsI TTSAA 1 cut(s) 424
AjnI CCWGG 1 cut(s) 614
AleI CACNNNNGTG 1 cut(s) 528
AluBI AGCT 2 cut(s) 579, 635
AluI AGCT 2 cut(s) 579, 635
Alw26I GTCTC 2 cut(s) 41, 395
AlwI GGATC 3 cut(s) 233, 235, 473
AoxI GGCC 4 cut(s) 277, 573, 612, 665
AspS9I GGNCC 2 cut(s) 573, 665
BaeGI GKGCMC 1 cut(s) 552
BalI TGGCCA 1 cut(s) 279
BanI GGYRCC 1 cut(s) 547
BanII GRGCYC 1 cut(s) 646
BarI GAAGNNNNNNTAC 2 cut(s) 404, 436
BbsI GAAGAC 2 cut(s) 110, 412
BccI CCATC 5 cut(s) 218, 245, 353, 362, 527
BceAI ACGGC 3 cut(s) 529, 541, 604
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 1 cut(s) 616
BcoDI GTCTC 2 cut(s) 41, 395
BfaI CTAG 2 cut(s) 632, 647
BglII AGATCT 1 cut(s) 192
BisI GCNGC 4 cut(s) 100, 454, 457, 508
BlsI GCNGC 4 cut(s) 101, 455, 458, 509
Bme1390I CCNGG 1 cut(s) 616
BmgT120I GGNCC 2 cut(s) 573, 665
BmiI GGNNCC 1 cut(s) 549
BmrFI CCNGG 1 cut(s) 616
BmrI ACTGGG 1 cut(s) 580
BmuI ACTGGG 1 cut(s) 580
BpiI GAAGAC 2 cut(s) 110, 412
BpmI CTGGAG 1 cut(s) 468
BsaBI GATNNNNATC 1 cut(s) 176
BsaJI CCNNGG 2 cut(s) 499, 615
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 663
Bse1I ACTGG 1 cut(s) 575
Bse8I GATNNNNATC 1 cut(s) 176
BseBI CCWGG 1 cut(s) 616
BseDI CCNNGG 2 cut(s) 499, 615
BseGI GGATG 1 cut(s) 589
BseJI GATNNNNATC 1 cut(s) 176
BseLI CCNNNNNNNGG 2 cut(s) 46, 663
BseNI ACTGG 1 cut(s) 575
BseRI GAGGAG 2 cut(s) 29, 422
BseSI GKGCMC 1 cut(s) 552
BseYI CCCAGC 2 cut(s) 579, 639
BsgI GTGCAG 1 cut(s) 399
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 4 cut(s) 279, 575, 614, 667
BshNI GGYRCC 1 cut(s) 547
BslI CCNNNNNNNGG 2 cut(s) 46, 663
BsmAI GTCTC 2 cut(s) 41, 395
BsmBI CGTCTC 1 cut(s) 41
BsnI GGCC 4 cut(s) 279, 575, 614, 667
Bsp1286I GDGCHC 2 cut(s) 552, 646
Bsp143I GATC 6 cut(s) 183, 192, 227, 238, 325, 478
BspACI CCGC 9 cut(s) 50, 54, 99, 273, 297, 453, 456, 459, 507
BspANI GGCC 4 cut(s) 279, 575, 614, 667
BspFNI CGCG 1 cut(s) 273
BspHI TCATGA 1 cut(s) 399
BspLI GGNNCC 1 cut(s) 549
BspPI GGATC 3 cut(s) 233, 235, 473
BspT107I GGYRCC 1 cut(s) 547
BsrI ACTGG 1 cut(s) 575
BssECI CCNNGG 2 cut(s) 499, 615
BssMI GATC 6 cut(s) 183, 192, 227, 238, 325, 478
Bst2UI CCWGG 1 cut(s) 616
Bst4CI ACNGT 1 cut(s) 503
Bst6I CTCTTC 2 cut(s) 49, 117
BstC8I GCNNGC 5 cut(s) 52, 77, 321, 577, 637
BstDEI CTNAG 1 cut(s) 669
BstDSI CCRYGG 1 cut(s) 499
BstF5I GGATG 1 cut(s) 589
BstFNI CGCG 1 cut(s) 273
BstKTI GATC 6 cut(s) 186, 195, 230, 241, 328, 481
BstMAI GTCTC 2 cut(s) 41, 395
BstMBI GATC 6 cut(s) 183, 192, 227, 238, 325, 478
BstMWI GCNNNNNNNGC 3 cut(s) 513, 547, 641
BstNI CCWGG 1 cut(s) 616
BstSCI CCNGG 1 cut(s) 614
BstSLI GKGCMC 1 cut(s) 552
BstUI CGCG 1 cut(s) 273
BstV2I GAAGAC 2 cut(s) 110, 412
BstX2I RGATCY 2 cut(s) 192, 227
BstYI RGATCY 2 cut(s) 192, 227
BsuRI GGCC 4 cut(s) 279, 575, 614, 667
BtgI CCRYGG 1 cut(s) 499
BtsCI GGATG 1 cut(s) 589
Cac8I GCNNGC 5 cut(s) 52, 77, 321, 577, 637
CciI TCATGA 1 cut(s) 399
Cfr13I GGNCC 2 cut(s) 573, 665
CseI GACGC 1 cut(s) 279
Csp6I GTAC 1 cut(s) 438
CviAII CATG 1 cut(s) 400
CviQI GTAC 1 cut(s) 438
DdeI CTNAG 1 cut(s) 669
DpnI GATC 6 cut(s) 185, 194, 229, 240, 327, 480
DpnII GATC 6 cut(s) 183, 192, 227, 238, 325, 478
EaeI YGGCCR 1 cut(s) 277
Eam1104I CTCTTC 2 cut(s) 49, 117
EarI CTCTTC 2 cut(s) 49, 117
Eco24I GRGCYC 1 cut(s) 646
EcoRII CCWGG 1 cut(s) 614
EcoT38I GRGCYC 1 cut(s) 646
Esp3I CGTCTC 1 cut(s) 41
FaeI CATG 1 cut(s) 403
FaiI YATR 2 cut(s) 93, 401
FatI CATG 1 cut(s) 399
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 4 cut(s) 100, 454, 457, 508
FokI GGATG 1 cut(s) 596
FriOI GRGCYC 1 cut(s) 646
Fsp4HI GCNGC 4 cut(s) 100, 454, 457, 508
FspBI CTAG 2 cut(s) 632, 647
GluI GCNGC 4 cut(s) 100, 454, 457, 508
GsaI CCCAGC 2 cut(s) 583, 643
GsuI CTGGAG 1 cut(s) 468
HaeIII GGCC 4 cut(s) 279, 575, 614, 667
HgaI GACGC 1 cut(s) 279
Hin1II CATG 1 cut(s) 403
HinfI GANTC 3 cut(s) 10, 177, 473
Hpy166II GTNNAC 1 cut(s) 654
Hpy188I TCNGA 4 cut(s) 9, 192, 364, 478
Hpy188III TCNNGA 5 cut(s) 18, 181, 236, 400, 447
Hpy8I GTNNAC 1 cut(s) 654
Hpy99I CGWCG 3 cut(s) 36, 273, 515
HpyAV CCTTC 2 cut(s) 78, 587
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4V TGCA 2 cut(s) 380, 523
HpyF10VI GCNNNNNNNGC 3 cut(s) 513, 547, 641
HpyF3I CTNAG 1 cut(s) 669
Hsp92II CATG 1 cut(s) 403
Kzo9I GATC 6 cut(s) 183, 192, 227, 238, 325, 478
LmnI GCTCC 1 cut(s) 347
MaeI CTAG 2 cut(s) 632, 647
MaeIII GTNAC 2 cut(s) 263, 493
MalI GATC 6 cut(s) 185, 194, 229, 240, 327, 480
MboI GATC 6 cut(s) 183, 192, 227, 238, 325, 478
MboII GAAGA 6 cut(s) 36, 104, 110, 120, 340, 412
MflI RGATCY 2 cut(s) 192, 227
MhlI GDGCHC 2 cut(s) 552, 646
MlsI TGGCCA 1 cut(s) 279
MluCI AATT 2 cut(s) 558, 600
MluNI TGGCCA 1 cut(s) 279
MlyI GAGTC 1 cut(s) 4
MnlI CCTC 9 cut(s) 50, 132, 134, 400, 425, 443, 492, 538, 604
Mox20I TGGCCA 1 cut(s) 279
MscI TGGCCA 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 528
Msp20I TGGCCA 1 cut(s) 279
MspA1I CMGCKG 2 cut(s) 99, 579
MspR9I CCNGG 1 cut(s) 616
MvaI CCWGG 1 cut(s) 616
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 3 cut(s) 513, 547, 641
NdeII GATC 6 cut(s) 183, 192, 227, 238, 325, 478
NlaIII CATG 1 cut(s) 403
NlaIV GGNNCC 1 cut(s) 549
NmuCI GTSAC 2 cut(s) 263, 493
OliI CACNNNNGTG 1 cut(s) 528
PagI TCATGA 1 cut(s) 399
PcsI WCGNNNNNNNCGW 1 cut(s) 507
PfeI GAWTC 2 cut(s) 177, 473
PkrI GCNGC 4 cut(s) 101, 455, 458, 509
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 1 cut(s) 614
PspFI CCCAGC 2 cut(s) 579, 639
PspGI CCWGG 1 cut(s) 614
PspN4I GGNNCC 1 cut(s) 549
PspPI GGNCC 2 cut(s) 573, 665
PsuI RGATCY 2 cut(s) 192, 227
PvuII CAGCTG 1 cut(s) 579
RsaI GTAC 1 cut(s) 439
RsaNI GTAC 1 cut(s) 438
RseI CAYNNNNRTG 1 cut(s) 528
SatI GCNGC 4 cut(s) 100, 454, 457, 508
Sau3AI GATC 6 cut(s) 183, 192, 227, 238, 325, 478
Sau96I GGNCC 2 cut(s) 573, 665
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 616
SduI GDGCHC 2 cut(s) 552, 646
SetI ASST 5 cut(s) 70, 436, 549, 581, 637
SmiMI CAYNNNNRTG 1 cut(s) 528
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 2 cut(s) 558, 600
SsiI CCGC 9 cut(s) 50, 54, 99, 273, 297, 453, 456, 459, 507
SspMI CTAG 2 cut(s) 632, 647
StyD4I CCNGG 1 cut(s) 614
TaaI ACNGT 1 cut(s) 503
TaqII GACCGA 1 cut(s) 282
TasI AATT 2 cut(s) 558, 600
TauI GCSGC 4 cut(s) 102, 456, 459, 510
TfiI GAWTC 2 cut(s) 177, 473
TseFI GTSAC 2 cut(s) 263, 493
Tsp45I GTSAC 2 cut(s) 263, 493
TspDTI ATGAA 1 cut(s) 388
TspGWI ACGGA 2 cut(s) 231, 419
XspI CTAG 2 cut(s) 632, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.