Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001047

Physical Location & Seq

Genomic Coordinates Forward (+)

63776611 .. 63777622

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG366200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGTCATGGCTATTGCTCGTCTGGTAGCTAATCGTTCCTTTCTTGTTTTTGCTTTTGTGTTCTTGCACGGAGAGCCGCCTTGGTGTGGGCTCCCTGTGGTTACTGATTGGAAGGGTAGTGTTGCTGTTTGGATGGCTGATCGGAGGCCGAGCTCTAACGGCATGGATCTGGTTTGGCCTGAGTTGGATGGGCGCATCTGGGTTTTGGATCGGGGTCGTCAGACTTCCGACGGTGATTGGGATTGTATAATCGATTTGGGTAGCCCTGGTGGTTCGCTGCAGCGTCGGGGTGTTGCAGGAGTGGGGTTGGCCCGACCAGTTCAGGGGAGCGATCAAAGTTTGGAGGATCTTCAGGTTGTCCTGGGCGACTCCGATCGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

13.88

Weight (kDa)

4.78

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001047)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c11g0499391 RchiOBHm_Chr3g0447361 RchiOBHm_Chr7g0218341 RchiOBHm_Chr7g0226151 RchiOBHm_Chr7g0236171 RchiOBHm_Chr7g0236221
rosa_laevigata	RLG00000001100 RLG00000001939 RLG00000012810 RLG00000013102 RLG00000013301 RLG00000020513 RLG00000030019 RLG00000037087
rosa_multiflora	Rmu_sc0000570.1_g000004 Rmu_sc0010974.1_g000003 Rmu_sc0014688.1_g000003 Rmu_sc0040332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000490 Rroxscaffold_3G00225330 Rroxscaffold_3G00227720 Rroxscaffold_6G00410030 Rroxscaffold_7G00159290
rosa_rugosa	Rorug03G0036000 Rorug05G0301600 Rorug07G0294600 Rorug07G0294600 Rorug07G0294600 Rorug07G0295400 Rorug07G0295400
rosa_samantha	Rh1AG363600 Rh1BG122700 Rh1CG048900 Rh1CG366200 Rh1DG053200 Rh1DG383900 Rh2BG407500 Rh2CG090200 Rh2CG606900 Rh2DG420300 Rh2DG655300 Rh3DG114600 Rh4AG182100 Rh4CG412200 Rh4CG453300 Rh4DG240200 Rh4DG240300 Rh5AG138000 Rh5BG568100 Rh5DG205500 Rh6AG006600 Rh6AG084300 Rh6AG150400 Rh6BG073500 Rh6BG279100 Rh6CG073700 Rh6DG070600 Rh7AG101500 Rh7DG439100
rosa_wichuraiana	Rw2G020930 Rw7G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	3 cut(s)	174, 216, 354
AcuI	CTGAAG	1 cut(s)	335
AfiI	CCNNNNNNNGG	2 cut(s)	86, 323
AjnI	CCWGG	2 cut(s)	265, 360
AluBI	AGCT	2 cut(s)	29, 153
AluI	AGCT	2 cut(s)	29, 153
Alw21I	GWGCWC	1 cut(s)	155
AlwI	GGATC	3 cut(s)	174, 216, 354
AoxI	GGCC	3 cut(s)	146, 176, 309
ApeKI	GCWGC	2 cut(s)	277, 280
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	245
BanII	GRGCYC	2 cut(s)	93, 155
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	264, 292
BccI	CCATC	2 cut(s)	127, 182
BceAI	ACGGC	1 cut(s)	175
BciT130I	CCWGG	2 cut(s)	267, 362
BfmI	CTRYAG	1 cut(s)	278
BisI	GCNGC	3 cut(s)	77, 278, 281
BlsI	GCNGC	3 cut(s)	78, 279, 282
Bme1390I	CCNGG	2 cut(s)	267, 362
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	2 cut(s)	267, 362
BmsI	GCATC	1 cut(s)	204
Bsa29I	ATCGAT	1 cut(s)	252
BsaJI	CCNNGG	3 cut(s)	80, 265, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 323
Bse1I	ACTGG	1 cut(s)	317
BseBI	CCWGG	2 cut(s)	267, 362
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	3 cut(s)	80, 265, 361
BseGI	GGATG	2 cut(s)	138, 193
BseLI	CCNNNNNNNGG	2 cut(s)	86, 323
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	317
BseXI	GCAGC	2 cut(s)	264, 292
Bsh1285I	CGRYCG	1 cut(s)	376
BshFI	GGCC	3 cut(s)	148, 178, 311
BshVI	ATCGAT	1 cut(s)	252
BsiEI	CGRYCG	1 cut(s)	376
BsiHKAI	GWGCWC	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	86, 323
BsnI	GGCC	3 cut(s)	148, 178, 311
Bsp1286I	GDGCHC	2 cut(s)	93, 155
Bsp143I	GATC	6 cut(s)	139, 166, 208, 331, 346, 373
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	3 cut(s)	148, 178, 311
BspCNI	CTCAG	1 cut(s)	172
BspDI	ATCGAT	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	92
BspMAI	CTGCAG	1 cut(s)	282
BspPI	GGATC	3 cut(s)	174, 216, 354
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	3 cut(s)	80, 265, 361
BssMI	GATC	6 cut(s)	139, 166, 208, 331, 346, 373
BssT1I	CCWWGG	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	267, 362
Bst4CI	ACNGT	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	138, 193
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	6 cut(s)	142, 169, 211, 334, 349, 376
BstMBI	GATC	6 cut(s)	139, 166, 208, 331, 346, 373
BstMCI	CGRYCG	1 cut(s)	376
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 159
BstNI	CCWGG	2 cut(s)	267, 362
BstSCI	CCNGG	2 cut(s)	265, 360
BstSFI	CTRYAG	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	264, 292
BstX2I	RGATCY	2 cut(s)	166, 346
BstYI	RGATCY	2 cut(s)	166, 346
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	3 cut(s)	148, 178, 311
BsuTUI	ATCGAT	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	138, 193
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	1 cut(s)	310
ClaI	ATCGAT	1 cut(s)	252
CseI	GACGC	1 cut(s)	272
CviAII	CATG	2 cut(s)	7, 163
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	6 cut(s)	141, 168, 210, 333, 348, 375
DpnII	GATC	6 cut(s)	139, 166, 208, 331, 346, 373
Ecl136II	GAGCTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	80
Eco24I	GRGCYC	2 cut(s)	93, 155
Eco53kI	GAGCTC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	265, 360
EcoT14I	CCWWGG	1 cut(s)	80
EcoT38I	GRGCYC	2 cut(s)	93, 155
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	2 cut(s)	10, 166
FaiI	YATR	3 cut(s)	8, 164, 248
FatI	CATG	2 cut(s)	6, 162
Fnu4HI	GCNGC	3 cut(s)	77, 278, 281
FokI	GGATG	2 cut(s)	145, 200
FriOI	GRGCYC	2 cut(s)	93, 155
Fsp4HI	GCNGC	3 cut(s)	77, 278, 281
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	3 cut(s)	77, 278, 281
HaeIII	GGCC	3 cut(s)	148, 178, 311
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	10, 166
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HinfI	GANTC	1 cut(s)	368
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	4 cut(s)	144, 222, 229, 373
Hpy99I	CGWCG	2 cut(s)	233, 288
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	3 cut(s)	67, 280, 296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 159
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	10, 166
HspAI	GCGC	1 cut(s)	193
Kzo9I	GATC	6 cut(s)	139, 166, 208, 331, 346, 373
LmnI	GCTCC	2 cut(s)	96, 327
Lsp1109I	GCAGC	2 cut(s)	264, 292
LweI	GCATC	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	6 cut(s)	141, 168, 210, 333, 348, 375
MboI	GATC	6 cut(s)	139, 166, 208, 331, 346, 373
MboII	GAAGA	1 cut(s)	341
MflI	RGATCY	2 cut(s)	166, 346
MhlI	GDGCHC	2 cut(s)	93, 155
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	2 cut(s)	165, 252
MnlI	CCTC	2 cut(s)	138, 337
MspR9I	CCNGG	2 cut(s)	267, 362
MvaI	CCWGG	2 cut(s)	267, 362
MwoI	GCNNNNNNNGC	2 cut(s)	73, 159
NdeII	GATC	6 cut(s)	139, 166, 208, 331, 346, 373
NlaIII	CATG	2 cut(s)	10, 166
NlaIV	GGNNCC	1 cut(s)	92
NmeAIII	GCCGAG	1 cut(s)	174
PkrI	GCNGC	3 cut(s)	78, 279, 282
Ple19I	CGATCG	1 cut(s)	376
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	155
Psp6I	CCWGG	2 cut(s)	265, 360
PspGI	CCWGG	2 cut(s)	265, 360
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	282
PsuI	RGATCY	2 cut(s)	166, 346
PvuI	CGATCG	1 cut(s)	376
SacI	GAGCTC	1 cut(s)	155
SatI	GCNGC	3 cut(s)	77, 278, 281
Sau3AI	GATC	6 cut(s)	139, 166, 208, 331, 346, 373
Sau96I	GGNCC	1 cut(s)	310
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	2 cut(s)	267, 362
SduI	GDGCHC	2 cut(s)	93, 155
SetI	ASST	3 cut(s)	31, 155, 357
SfaNI	GCATC	1 cut(s)	204
SfcI	CTRYAG	1 cut(s)	278
SsiI	CCGC	1 cut(s)	77
SstI	GAGCTC	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	265, 360
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	1 cut(s)	252
TauI	GCSGC	1 cut(s)	79
TseI	GCWGC	2 cut(s)	277, 280
TspGWI	ACGGA	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.