Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000570.1

Orthogroup ID

OG0001047

Physical Location & Seq

Genomic Coordinates Reverse (-)

18691 .. 21680

Gene Structure 2990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000570.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atggatctgaagttggtttgcggtgatcaggaatgggcgcggatttgggggtctttcgatcctggagatggtacagtagcgtcggcagtgacccacggtgacggcggctatggggacggaggtttccagggcgacggtgctcctacttgggctctctgggctggtgatcgttctggggatggggatgctcaatgtggtggtttttttggctatgctggtgatggcctgaaggaggtcagtagggccggcggcgcgtttgccggcgacggcgacggtgacatgcaacttgggagcggccatgttgtggagcagctggttcttagggtttcagaaaatttgggctgttgggctcaagtattgggcttagtctggattgggatgctttgggaccatatgggctccgagggtgttgctagagggcttctttatctccatcatgattcctatgggaaggtgataaatagagatttaaaagtcaataacattctcttggatgagaaaatgaatccaaaaatctcagattttggattggcacgcatagttgaagaaacacagagtctagaaaatactctgaaggttgttggaacacggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

197

Amino Acids

20.93

Weight (kDa)

4.58

Isoelectric Point (pI)

18.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001047)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c11g0499391 RchiOBHm_Chr3g0447361 RchiOBHm_Chr7g0218341 RchiOBHm_Chr7g0226151 RchiOBHm_Chr7g0236171 RchiOBHm_Chr7g0236221
rosa_laevigata	RLG00000001100 RLG00000001939 RLG00000012810 RLG00000013102 RLG00000013301 RLG00000020513 RLG00000030019 RLG00000037087
rosa_multiflora	Rmu_sc0000570.1_g000004 Rmu_sc0010974.1_g000003 Rmu_sc0014688.1_g000003 Rmu_sc0040332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000490 Rroxscaffold_3G00225330 Rroxscaffold_3G00227720 Rroxscaffold_6G00410030 Rroxscaffold_7G00159290
rosa_rugosa	Rorug03G0036000 Rorug05G0301600 Rorug07G0294600 Rorug07G0294600 Rorug07G0294600 Rorug07G0295400 Rorug07G0295400
rosa_samantha	Rh1AG363600 Rh1BG122700 Rh1CG048900 Rh1CG366200 Rh1DG053200 Rh1DG383900 Rh2BG407500 Rh2CG090200 Rh2CG606900 Rh2DG420300 Rh2DG655300 Rh3DG114600 Rh4AG182100 Rh4CG412200 Rh4CG453300 Rh4DG240200 Rh4DG240300 Rh5AG138000 Rh5BG568100 Rh5DG205500 Rh6AG006600 Rh6AG084300 Rh6AG150400 Rh6BG073500 Rh6BG279100 Rh6CG073700 Rh6DG070600 Rh7AG101500 Rh7DG439100
rosa_wichuraiana	Rw2G020930 Rw7G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	304
AccBSI	CCGCTC	1 cut(s)	294
AccII	CGCG	2 cut(s)	40, 254
AciI	CCGC	5 cut(s)	21, 40, 105, 249, 294
AclWI	GGATC	2 cut(s)	12, 53
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	3 cut(s)	29, 248, 593
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	3 cut(s)	68, 232, 304
AgsI	TTSAA	1 cut(s)	545
AjnI	CCWGG	2 cut(s)	61, 126
AluBI	AGCT	1 cut(s)	313
AluI	AGCT	1 cut(s)	313
Alw21I	GWGCWC	1 cut(s)	142
AlwI	GGATC	2 cut(s)	12, 53
AoxI	GGCC	3 cut(s)	223, 243, 295
ApeKI	GCWGC	1 cut(s)	310
ApoI	RAATTY	1 cut(s)	334
AspLEI	GCGC	2 cut(s)	40, 254
AspS9I	GGNCC	2 cut(s)	243, 388
AsuHPI	GGTGA	6 cut(s)	35, 110, 176, 230, 287, 466
AvaII	GGWCC	1 cut(s)	388
BanII	GRGCYC	3 cut(s)	154, 352, 401
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	4 cut(s)	62, 173, 215, 441
BceAI	ACGGC	2 cut(s)	118, 283
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BciT130I	CCWGG	2 cut(s)	63, 128
BclI	TGATCA	1 cut(s)	25
BfaI	CTAG	2 cut(s)	414, 560
BisI	GCNGC	4 cut(s)	106, 250, 295, 311
BlsI	GCNGC	4 cut(s)	107, 251, 296, 312
Bme1390I	CCNGG	2 cut(s)	63, 128
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	243, 388
BmiI	GGNNCC	2 cut(s)	389, 400
BmrFI	CCNGG	2 cut(s)	63, 128
BmsI	GCATC	2 cut(s)	175, 369
BpmI	CTGGAG	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	336
BsaJI	CCNNGG	3 cut(s)	94, 127, 402
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 232, 304
Bse118I	RCCGGY	2 cut(s)	245, 260
BseBI	CCWGG	2 cut(s)	63, 128
BseDI	CCNNGG	3 cut(s)	94, 127, 402
BseGI	GGATG	4 cut(s)	184, 190, 384, 499
BseLI	CCNNNNNNNGG	3 cut(s)	68, 232, 304
BseMII	CTCAG	1 cut(s)	531
BseXI	GCAGC	1 cut(s)	322
Bsh1236I	CGCG	2 cut(s)	40, 254
BshFI	GGCC	3 cut(s)	225, 245, 297
BsiHKAI	GWGCWC	1 cut(s)	142
BsiSI	CCGG	2 cut(s)	246, 261
BslFI	GGGAC	2 cut(s)	128, 401
BslI	CCNNNNNNNGG	3 cut(s)	68, 232, 304
BsmFI	GGGAC	2 cut(s)	128, 401
BsnI	GGCC	3 cut(s)	225, 245, 297
Bsp1286I	GDGCHC	4 cut(s)	142, 154, 352, 401
Bsp143I	GATC	4 cut(s)	4, 25, 58, 166
BspACI	CCGC	5 cut(s)	21, 40, 105, 249, 294
BspANI	GGCC	3 cut(s)	225, 245, 297
BspCNI	CTCAG	1 cut(s)	530
BspFNI	CGCG	2 cut(s)	40, 254
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	389, 400
BspPI	GGATC	2 cut(s)	12, 53
BsrBI	CCGCTC	1 cut(s)	294
BsrFI	RCCGGY	2 cut(s)	245, 260
BssAI	RCCGGY	2 cut(s)	245, 260
BssECI	CCNNGG	3 cut(s)	94, 127, 402
BssMI	GATC	4 cut(s)	4, 25, 58, 166
Bst2UI	CCWGG	2 cut(s)	63, 128
Bst4CI	ACNGT	5 cut(s)	76, 98, 137, 275, 591
BstC8I	GCNNGC	3 cut(s)	247, 262, 535
BstDEI	CTNAG	3 cut(s)	320, 364, 517
BstDSI	CCRYGG	1 cut(s)	94
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	4 cut(s)	184, 190, 384, 499
BstFNI	CGCG	2 cut(s)	40, 254
BstHHI	GCGC	2 cut(s)	40, 254
BstKTI	GATC	4 cut(s)	7, 28, 61, 169
BstMBI	GATC	4 cut(s)	4, 25, 58, 166
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 251
BstNI	CCWGG	2 cut(s)	63, 128
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	2 cut(s)	61, 126
BstUI	CGCG	2 cut(s)	40, 254
BstV1I	GCAGC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	3 cut(s)	225, 245, 297
BtgI	CCRYGG	1 cut(s)	94
BtsCI	GGATG	4 cut(s)	184, 190, 384, 499
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	3 cut(s)	247, 262, 535
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	2 cut(s)	40, 254
Cfr10I	RCCGGY	2 cut(s)	245, 260
Cfr13I	GGNCC	2 cut(s)	243, 388
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	3 cut(s)	280, 299, 437
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	3 cut(s)	320, 364, 517
DpnI	GATC	4 cut(s)	6, 27, 60, 168
DpnII	GATC	4 cut(s)	4, 25, 58, 166
DraI	TTTAAA	1 cut(s)	471
EaeI	YGGCCR	1 cut(s)	295
Eco24I	GRGCYC	3 cut(s)	154, 352, 401
Eco47I	GGWCC	1 cut(s)	388
Eco57I	CTGAAG	3 cut(s)	29, 248, 593
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	61, 126
EcoT38I	GRGCYC	3 cut(s)	154, 352, 401
FaeI	CATG	3 cut(s)	283, 302, 440
FaiI	YATR	9 cut(s)	111, 213, 281, 300, 393, 395, 438, 447, 539
FaqI	GGGAC	2 cut(s)	128, 401
FatI	CATG	3 cut(s)	279, 298, 436
FauNDI	CATATG	1 cut(s)	393
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	4 cut(s)	106, 250, 295, 311
FokI	GGATG	4 cut(s)	191, 197, 391, 506
FriOI	GRGCYC	3 cut(s)	154, 352, 401
Fsp4HI	GCNGC	4 cut(s)	106, 250, 295, 311
FspBI	CTAG	2 cut(s)	414, 560
GlaI	GCGC	2 cut(s)	39, 253
GluI	GCNGC	4 cut(s)	106, 250, 295, 311
GsuI	CTGGAG	1 cut(s)	84
HaeIII	GGCC	3 cut(s)	225, 245, 297
HapII	CCGG	2 cut(s)	246, 261
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	2 cut(s)	40, 254
Hin1II	CATG	3 cut(s)	283, 302, 440
Hin6I	GCGC	2 cut(s)	38, 252
HinP1I	GCGC	2 cut(s)	38, 252
HinfI	GANTC	3 cut(s)	440, 505, 556
HpaII	CCGG	2 cut(s)	246, 261
HphI	GGTGA	6 cut(s)	35, 110, 176, 230, 287, 466
Hpy188I	TCNGA	5 cut(s)	9, 331, 403, 520, 573
Hpy188III	TCNNGA	4 cut(s)	29, 370, 437, 560
Hpy99I	CGWCG	4 cut(s)	85, 137, 269, 275
HpyAV	CCTTC	3 cut(s)	223, 445, 568
HpyCH4III	ACNGT	5 cut(s)	76, 98, 137, 275, 591
HpyCH4V	TGCA	1 cut(s)	283
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 251
HpyF3I	CTNAG	3 cut(s)	320, 364, 517
Hsp92II	CATG	3 cut(s)	283, 302, 440
HspAI	GCGC	2 cut(s)	38, 252
KroI	GCCGGC	2 cut(s)	245, 260
KroNI	GCCGGC	2 cut(s)	247, 262
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	4 cut(s)	4, 25, 58, 166
LmnI	GCTCC	4 cut(s)	145, 291, 307, 404
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	2 cut(s)	175, 369
MaeI	CTAG	2 cut(s)	414, 560
MaeIII	GTNAC	3 cut(s)	88, 98, 275
MalI	GATC	4 cut(s)	6, 27, 60, 168
MbiI	CCGCTC	1 cut(s)	294
MboI	GATC	4 cut(s)	4, 25, 58, 166
MboII	GAAGA	1 cut(s)	557
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	4 cut(s)	142, 154, 352, 401
MluCI	AATT	1 cut(s)	334
MlyI	GAGTC	1 cut(s)	565
MmeI	TCCRAC	1 cut(s)	562
MnlI	CCTC	4 cut(s)	113, 226, 397, 410
MroNI	GCCGGC	2 cut(s)	245, 260
MseI	TTAA	1 cut(s)	470
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	2 cut(s)	246, 261
MspR9I	CCNGG	2 cut(s)	63, 128
MvaI	CCWGG	2 cut(s)	63, 128
MvnI	CGCG	2 cut(s)	40, 254
MwoI	GCNNNNNNNGC	2 cut(s)	158, 251
NaeI	GCCGGC	2 cut(s)	247, 262
NdeI	CATATG	1 cut(s)	393
NdeII	GATC	4 cut(s)	4, 25, 58, 166
NgoMIV	GCCGGC	2 cut(s)	245, 260
NlaIII	CATG	3 cut(s)	283, 302, 440
NlaIV	GGNNCC	2 cut(s)	389, 400
NmuCI	GTSAC	3 cut(s)	88, 98, 275
NspI	RCATGY	1 cut(s)	283
PagI	TCATGA	1 cut(s)	436
PdiI	GCCGGC	2 cut(s)	247, 262
PfeI	GAWTC	2 cut(s)	440, 505
PflMI	CCANNNNNTGG	1 cut(s)	304
PfoI	TCCNGGA	1 cut(s)	61
PkrI	GCNGC	4 cut(s)	107, 251, 296, 312
PleI	GAGTC	1 cut(s)	564
PpsI	GAGTC	1 cut(s)	564
Psp6I	CCWGG	2 cut(s)	61, 126
PspGI	CCWGG	2 cut(s)	61, 126
PspN4I	GGNNCC	2 cut(s)	389, 400
PspPI	GGNCC	2 cut(s)	243, 388
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	313
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	4 cut(s)	106, 250, 295, 311
Sau3AI	GATC	4 cut(s)	4, 25, 58, 166
Sau96I	GGNCC	2 cut(s)	243, 388
SchI	GAGTC	1 cut(s)	565
ScrFI	CCNGG	2 cut(s)	63, 128
SduI	GDGCHC	4 cut(s)	142, 154, 352, 401
SetI	ASST	5 cut(s)	124, 237, 315, 456, 579
SfaNI	GCATC	2 cut(s)	175, 369
SinI	GGWCC	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	1 cut(s)	334
SsiI	CCGC	5 cut(s)	21, 40, 105, 249, 294
SspMI	CTAG	2 cut(s)	414, 560
StyD4I	CCNGG	2 cut(s)	61, 126
TaaI	ACNGT	5 cut(s)	76, 98, 137, 275, 591
TaqI	TCGA	1 cut(s)	57
TasI	AATT	1 cut(s)	334
TauI	GCSGC	3 cut(s)	108, 252, 297
TfiI	GAWTC	2 cut(s)	440, 505
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	3 cut(s)	88, 98, 275
TseI	GCWGC	1 cut(s)	310
Tsp45I	GTSAC	3 cut(s)	88, 98, 275
TspDTI	ATGAA	1 cut(s)	518
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	93
Van91I	CCANNNNNTGG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	388
XagI	CCTNNNNNAGG	1 cut(s)	230
XapI	RAATTY	1 cut(s)	334
XbaI	TCTAGA	1 cut(s)	559
XceI	RCATGY	1 cut(s)	283
XspI	CTAG	2 cut(s)	414, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.