Rh6DG070600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001047
Physical Location & Seq
Forward (+)
7539077 .. 7552493
13417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG070600.1

Sequence Viewer

Length: 462 bp
ATGGCTGATCGGAGGCCGAACTCTAACGGCGTGGTTCTGGTTTGGCCTAAGGTGGATGGGCGCATCTGGGTTTTGGATCAGGGTCGTCTGCCTTCCGACGGTGATAGGGATTGTACAATCGATTTGGTTGGCCCTGGTGGTTCGCTGCAGCGTCGTAGTGTTGCCGGAGTGGGGTTGGCCAGACCAGTTCAGGGGATCGATCAAAGCTTGGAGGATCTTCAGGTTGATAGTGATGCTGGATCTGCCCTTGATTCGTCTATTGATGGTGGTGGTAGCGACCGACGCGGTGGGGGTTGTCTCTGGTTCATGAAGGCGGAGTATCTGGTCTTCGATGGTGGAGGTGGTACTTTGTCTGGAGGCAGTGACGATTTCTGGGTGGAATCTGATCCCCTTGGGGTTGTGACCCACGGCGGTGGCGGCGATAGCTTGCACGGCTGTGACGGAGTGCGTGCGGTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

15.8

Weight (kDa)

4.39

Isoelectric Point (pI)

50.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 285
AciI CCGC 5 cut(s) 285, 314, 411, 417, 452
AclWI GGATC 5 cut(s) 84, 203, 222, 247, 380
AcoI YGGCCR 1 cut(s) 177
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 2 cut(s) 115, 346
AfiI CCNNNNNNNGG 3 cut(s) 98, 171, 191
AjnI CCWGG 1 cut(s) 133
AleI CACNNNNGTG 2 cut(s) 411, 435
AluBI AGCT 2 cut(s) 207, 426
AluI AGCT 2 cut(s) 207, 426
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 5 cut(s) 84, 203, 222, 247, 380
AoxI GGCC 4 cut(s) 14, 44, 130, 177
ApeKI GCWGC 2 cut(s) 145, 148
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 113
AxyI CCTNAGG 1 cut(s) 48
BalI TGGCCA 1 cut(s) 179
BarI GAAGNNNNNNTAC 2 cut(s) 311, 343
BbsI GAAGAC 1 cut(s) 319
BbvI GCAGC 2 cut(s) 132, 160
BccI CCATC 3 cut(s) 50, 257, 326
BceAI ACGGC 3 cut(s) 43, 424, 448
BciT130I CCWGG 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 146
BisI GCNGC 3 cut(s) 146, 149, 418
BlsI GCNGC 3 cut(s) 147, 150, 419
Bme1390I CCNGG 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 135
BmsI GCATC 2 cut(s) 72, 223
BpiI GAAGAC 1 cut(s) 319
BpmI CTGGAG 1 cut(s) 375
Bsa29I ATCGAT 2 cut(s) 120, 198
BsaJI CCNNGG 3 cut(s) 133, 391, 406
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 171, 191
Bse1I ACTGG 1 cut(s) 185
Bse21I CCTNAGG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 135
BseCI ATCGAT 2 cut(s) 120, 198
BseDI CCNNGG 3 cut(s) 133, 391, 406
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 3 cut(s) 98, 171, 191
BseNI ACTGG 1 cut(s) 185
BseXI GCAGC 2 cut(s) 132, 160
Bsh1236I CGCG 1 cut(s) 285
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 4 cut(s) 16, 46, 132, 179
BshVI ATCGAT 2 cut(s) 120, 198
BsiEI CGRYCG 1 cut(s) 280
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 3 cut(s) 98, 171, 191
BsmAI GTCTC 1 cut(s) 302
BsnI GGCC 4 cut(s) 16, 46, 132, 179
Bsp1407I TGTACA 1 cut(s) 113
Bsp143I GATC 7 cut(s) 7, 76, 195, 199, 214, 239, 385
BspACI CCGC 5 cut(s) 285, 314, 411, 417, 452
BspANI GGCC 4 cut(s) 16, 46, 132, 179
BspDI ATCGAT 2 cut(s) 120, 198
BspFNI CGCG 1 cut(s) 285
BspHI TCATGA 1 cut(s) 306
BspMAI CTGCAG 1 cut(s) 150
BspPI GGATC 5 cut(s) 84, 203, 222, 247, 380
BsrGI TGTACA 1 cut(s) 113
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 3 cut(s) 133, 391, 406
BssMI GATC 7 cut(s) 7, 76, 195, 199, 214, 239, 385
BssT1I CCWWGG 1 cut(s) 391
Bst2UI CCWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 101
BstAUI TGTACA 1 cut(s) 113
BstC8I GCNNGC 2 cut(s) 428, 450
BstDEI CTNAG 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 406
BstF5I GGATG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 285
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 7 cut(s) 10, 79, 198, 202, 217, 242, 388
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 7 cut(s) 7, 76, 195, 199, 214, 239, 385
BstMCI CGRYCG 1 cut(s) 280
BstMWI GCNNNNNNNGC 5 cut(s) 242, 282, 417, 423, 432
BstNI CCWGG 1 cut(s) 135
BstSCI CCNGG 1 cut(s) 133
BstSFI CTRYAG 1 cut(s) 146
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 2 cut(s) 132, 160
BstV2I GAAGAC 1 cut(s) 319
BstX2I RGATCY 2 cut(s) 214, 239
BstXI CCANNNNNNTGG 1 cut(s) 413
BstYI RGATCY 2 cut(s) 214, 239
Bsu15I ATCGAT 2 cut(s) 120, 198
Bsu36I CCTNAGG 1 cut(s) 48
BsuRI GGCC 4 cut(s) 16, 46, 132, 179
BsuTUI ATCGAT 2 cut(s) 120, 198
BtgI CCRYGG 1 cut(s) 406
BtsCI GGATG 1 cut(s) 61
BtsI GCAGTG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 367
Cac8I GCNNGC 2 cut(s) 428, 450
CciI TCATGA 1 cut(s) 306
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 131
ClaI ATCGAT 2 cut(s) 120, 198
CseI GACGC 2 cut(s) 140, 291
Csp6I GTAC 2 cut(s) 114, 345
CviAII CATG 1 cut(s) 307
CviJI RGCY 8 cut(s) 5, 16, 46, 132, 179, 207, 426, 435
CviKI_1 RGCY 8 cut(s) 5, 16, 46, 132, 179, 207, 426, 435
CviQI GTAC 2 cut(s) 114, 345
DdeI CTNAG 1 cut(s) 48
DpnI GATC 7 cut(s) 9, 78, 197, 201, 216, 241, 387
DpnII GATC 7 cut(s) 7, 76, 195, 199, 214, 239, 385
EaeI YGGCCR 1 cut(s) 177
EciI GGCGGA 1 cut(s) 329
Eco130I CCWWGG 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 203
Eco81I CCTNAGG 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 391
FaeI CATG 1 cut(s) 310
FaiI YATR 1 cut(s) 308
FatI CATG 1 cut(s) 306
Fnu4HI GCNGC 3 cut(s) 146, 149, 418
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 3 cut(s) 146, 149, 418
GlaI GCGC 1 cut(s) 62
GluI GCNGC 3 cut(s) 146, 149, 418
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 4 cut(s) 16, 46, 132, 179
HapII CCGG 1 cut(s) 165
HgaI GACGC 2 cut(s) 140, 291
HhaI GCGC 1 cut(s) 63
Hin1II CATG 1 cut(s) 310
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 205
HinfI GANTC 2 cut(s) 251, 380
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 113
Hpy188I TCNGA 3 cut(s) 12, 97, 385
Hpy188III TCNNGA 2 cut(s) 307, 354
Hpy99I CGWCG 3 cut(s) 101, 156, 285
HpyAV CCTTC 2 cut(s) 102, 304
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4V TGCA 2 cut(s) 148, 430
HpyF10VI GCNNNNNNNGC 5 cut(s) 242, 282, 417, 423, 432
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 1 cut(s) 310
HspAI GCGC 1 cut(s) 61
Kzo9I GATC 7 cut(s) 7, 76, 195, 199, 214, 239, 385
Lsp1109I GCAGC 2 cut(s) 132, 160
LweI GCATC 2 cut(s) 72, 223
MaeIII GTNAC 3 cut(s) 362, 400, 437
MalI GATC 7 cut(s) 9, 78, 197, 201, 216, 241, 387
MboI GATC 7 cut(s) 7, 76, 195, 199, 214, 239, 385
MboII GAAGA 2 cut(s) 209, 319
MflI RGATCY 2 cut(s) 214, 239
MlsI TGGCCA 1 cut(s) 179
MluCI AATT 1 cut(s) 456
MluNI TGGCCA 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 4 cut(s) 6, 205, 332, 350
Mox20I TGGCCA 1 cut(s) 179
MscI TGGCCA 1 cut(s) 179
MseI TTAA 1 cut(s) 460
MslI CAYNNNNRTG 2 cut(s) 411, 435
Msp20I TGGCCA 1 cut(s) 179
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 5 cut(s) 242, 282, 417, 423, 432
NdeII GATC 7 cut(s) 7, 76, 195, 199, 214, 239, 385
NlaIII CATG 1 cut(s) 310
NmuCI GTSAC 3 cut(s) 362, 400, 437
OliI CACNNNNGTG 2 cut(s) 411, 435
PagI TCATGA 1 cut(s) 306
PfeI GAWTC 2 cut(s) 251, 380
PkrI GCNGC 3 cut(s) 147, 150, 419
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PspPI GGNCC 1 cut(s) 131
PstI CTGCAG 1 cut(s) 150
PsuI RGATCY 2 cut(s) 214, 239
RsaI GTAC 2 cut(s) 115, 346
RsaNI GTAC 2 cut(s) 114, 345
RseI CAYNNNNRTG 2 cut(s) 411, 435
SaqAI TTAA 1 cut(s) 460
SatI GCNGC 3 cut(s) 146, 149, 418
Sau3AI GATC 7 cut(s) 7, 76, 195, 199, 214, 239, 385
Sau96I GGNCC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 135
SetI ASST 5 cut(s) 54, 209, 225, 343, 428
SfaNI GCATC 2 cut(s) 72, 223
SfcI CTRYAG 1 cut(s) 146
SmiMI CAYNNNNRTG 2 cut(s) 411, 435
Sse9I AATT 1 cut(s) 456
SsiI CCGC 5 cut(s) 285, 314, 411, 417, 452
StyD4I CCNGG 1 cut(s) 133
StyI CCWWGG 1 cut(s) 391
TaaI ACNGT 1 cut(s) 101
TaqI TCGA 3 cut(s) 120, 198, 330
TaqII GACCGA 1 cut(s) 294
TasI AATT 1 cut(s) 456
TatI WGTACW 1 cut(s) 113
TauI GCSGC 1 cut(s) 420
TfiI GAWTC 2 cut(s) 251, 380
Tru1I TTAA 1 cut(s) 460
Tru9I TTAA 1 cut(s) 460
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 3 cut(s) 362, 400, 437
TseI GCWGC 2 cut(s) 145, 148
Tsp45I GTSAC 3 cut(s) 362, 400, 437
TspDTI ATGAA 2 cut(s) 295, 323
TspGWI ACGGA 1 cut(s) 456
TspRI CASTG 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.