RLG00000001100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001047
Physical Location & Seq
Reverse (-)
10360857 .. 10361665
809 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001100

Sequence Viewer

Length: 675 bp
ATGGTCATTGGGAACAATCAAGTAATGTCATACACTTGTTCTCGCAATTCTTCTGCCGATGACCTCAAGAAACATGCAATGGAGGTTTTCAAGGATGCGACCAAAGATTGTGAGGACAAGGACATCAAAGAAAAATTTGACATGATTCAGGACTACAGTTCCCTTGAGAAATCTGCGTTTATGTTCTTCAATTCTACGGTGAATTCCGGCTTCCTTGACGAAGCTGAAGAGCTCCTTAACAAGGCCATACTGCCTGTTGTGGCGGTCCACACCTATGTCATTGGGATTGGGGTTGCTGCTGGCAATACCAATGCTGCTCTCAAGGCCTTTCAGCACATGTCAGCCTCTGGGGTTGCTCCAAACTCCTATACTTATGCAGTTTTGATCAAGGGACTCACTGCTGACCCCAACTACTGTGGAGATGCCAAGAAGTTCTTGCTTGAGATGATGGACAAGGGCTATGATGGAGGTTCTAAAGGGAAGGCCAACACCTTTAATAAGAAGGGTCATCAACTTTGCCCTTTCCAAGTTGAAGGGCTGATGCTTTGCTTCATCGATGTAATGCCAGCAGCTTCAGGATTAGGATGTTTCAGATATGGGGTAGCTAGTGACCGTAGGAAATCATGTAGGCTTGAGTTTAGTAGGGGGATTTGCTGCTATTCACTTTCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

225

Amino Acids

24.5

Weight (kDa)

6.87

Isoelectric Point (pI)

26.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 95 - 132 3.3e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 263
AcsI RAATTY 2 cut(s) 134, 202
AcuI CTGAAG 2 cut(s) 246, 558
AfiI CCNNNNNNNGG 1 cut(s) 241
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 3 cut(s) 91, 190, 533
AluBI AGCT 4 cut(s) 224, 232, 572, 605
AluI AGCT 4 cut(s) 224, 232, 572, 605
Alw21I GWGCWC 1 cut(s) 234
AlwNI CAGNNNCTG 1 cut(s) 347
AoxI GGCC 3 cut(s) 243, 324, 483
ApeKI GCWGC 4 cut(s) 296, 314, 569, 654
ApoI RAATTY 2 cut(s) 134, 202
AspS9I GGNCC 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 211
AvaII GGWCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 4 cut(s) 283, 301, 581, 641
BccI CCATC 2 cut(s) 442, 458
BclI TGATCA 1 cut(s) 384
BfaI CTAG 1 cut(s) 606
BfmI CTRYAG 1 cut(s) 154
BisI GCNGC 4 cut(s) 297, 315, 570, 655
BlsI GCNGC 4 cut(s) 298, 316, 571, 656
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 265
BmsI GCATC 3 cut(s) 85, 412, 531
BpuEI CTTGAG 5 cut(s) 50, 185, 305, 461, 653
Bsa29I ATCGAT 1 cut(s) 555
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse3DI GCAATG 1 cut(s) 84
BseCI ATCGAT 1 cut(s) 555
BseGI GGATG 2 cut(s) 100, 590
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 1 cut(s) 84
BseXI GCAGC 4 cut(s) 283, 301, 581, 641
BshFI GGCC 3 cut(s) 245, 326, 485
BshVI ATCGAT 1 cut(s) 555
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 405
BslI CCNNNNNNNGG 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 405
BsnI GGCC 3 cut(s) 245, 326, 485
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 1 cut(s) 384
BspACI CCGC 1 cut(s) 263
BspANI GGCC 3 cut(s) 245, 326, 485
BspDI ATCGAT 1 cut(s) 555
BspQI GCTCTTC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 84
BssMI GATC 1 cut(s) 384
Bst4CI ACNGT 4 cut(s) 158, 199, 416, 614
Bst6I CTCTTC 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 301, 567
BstENI CCTNNNNNAGG 1 cut(s) 239
BstF5I GGATG 2 cut(s) 100, 590
BstKTI GATC 1 cut(s) 387
BstMBI GATC 1 cut(s) 384
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNSI RCATGY 2 cut(s) 77, 340
BstSFI CTRYAG 1 cut(s) 154
BstV1I GCAGC 4 cut(s) 283, 301, 581, 641
Bsu15I ATCGAT 1 cut(s) 555
BsuRI GGCC 3 cut(s) 245, 326, 485
BsuTUI ATCGAT 1 cut(s) 555
BtsCI GGATG 2 cut(s) 100, 590
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 1 cut(s) 396
Cac8I GCNNGC 2 cut(s) 301, 567
CaiI CAGNNNCTG 1 cut(s) 347
Cfr13I GGNCC 1 cut(s) 265
ClaI ATCGAT 1 cut(s) 555
CspCI CAANNNNNGTGG 2 cut(s) 397, 432
CviAII CATG 4 cut(s) 74, 142, 337, 624
DpnI GATC 1 cut(s) 386
DpnII GATC 1 cut(s) 384
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Ecl136II GAGCTC 1 cut(s) 232
Eco147I AGGCCT 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 2 cut(s) 246, 558
EcoICRI GAGCTC 1 cut(s) 232
EcoNI CCTNNNNNAGG 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 234
FaeI CATG 4 cut(s) 77, 145, 340, 627
FalI AAGNNNNNCTT 4 cut(s) 219, 251, 419, 451
FaqI GGGAC 1 cut(s) 405
FatI CATG 4 cut(s) 73, 141, 336, 623
FbaI TGATCA 1 cut(s) 384
Fnu4HI GCNGC 4 cut(s) 297, 315, 570, 655
FokI GGATG 2 cut(s) 107, 597
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 4 cut(s) 297, 315, 570, 655
FspBI CTAG 1 cut(s) 606
GluI GCNGC 4 cut(s) 297, 315, 570, 655
HaeIII GGCC 3 cut(s) 245, 326, 485
HapII CCGG 1 cut(s) 207
Hin1II CATG 4 cut(s) 77, 145, 340, 627
HinfI GANTC 2 cut(s) 145, 393
HpaII CCGG 1 cut(s) 207
HphI GGTGA 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 593
Hpy188III TCNNGA 3 cut(s) 67, 149, 576
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 3 cut(s) 475, 496, 527
HpyCH4III ACNGT 4 cut(s) 158, 199, 416, 614
HpyCH4V TGCA 2 cut(s) 77, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
Hsp92II CATG 4 cut(s) 77, 145, 340, 627
Ksp22I TGATCA 1 cut(s) 384
Kzo9I GATC 1 cut(s) 384
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 2 cut(s) 237, 361
LpnPI CCDG 7 cut(s) 134, 220, 267, 285, 333, 561, 579
Lsp1109I GCAGC 4 cut(s) 283, 301, 581, 641
LweI GCATC 3 cut(s) 85, 412, 531
MaeI CTAG 1 cut(s) 606
MaeIII GTNAC 1 cut(s) 608
MalI GATC 1 cut(s) 386
MboI GATC 1 cut(s) 384
MboII GAAGA 3 cut(s) 42, 178, 239
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 4 cut(s) 46, 134, 190, 202
MlyI GAGTC 1 cut(s) 387
MnlI CCTC 5 cut(s) 74, 76, 106, 355, 461
MseI TTAA 2 cut(s) 237, 495
MslI CAYNNNNRTG 1 cut(s) 273
MspI CCGG 1 cut(s) 207
MwoI GCNNNNNNNGC 1 cut(s) 323
NdeII GATC 1 cut(s) 384
NlaIII CATG 4 cut(s) 77, 145, 340, 627
NmuCI GTSAC 1 cut(s) 608
NspI RCATGY 2 cut(s) 77, 340
PceI AGGCCT 1 cut(s) 326
PciI ACATGT 1 cut(s) 336
PciSI GCTCTTC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 4 cut(s) 298, 316, 571, 656
PleI GAGTC 1 cut(s) 387
PpsI GAGTC 1 cut(s) 387
PscI ACATGT 1 cut(s) 336
Psp124BI GAGCTC 1 cut(s) 234
PspPI GGNCC 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 347
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 234
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 2 cut(s) 237, 495
SatI GCNGC 4 cut(s) 297, 315, 570, 655
Sau3AI GATC 1 cut(s) 384
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 1 cut(s) 387
SduI GDGCHC 1 cut(s) 234
SetI ASST 9 cut(s) 66, 87, 226, 234, 275, 472, 494, 574, 607
SfaNI GCATC 3 cut(s) 85, 412, 531
SfcI CTRYAG 1 cut(s) 154
SinI GGWCC 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 5 cut(s) 65, 164, 320, 440, 632
SmoI CTYRAG 5 cut(s) 65, 164, 320, 440, 632
Sse9I AATT 4 cut(s) 46, 134, 190, 202
SseBI AGGCCT 1 cut(s) 326
SsiI CCGC 1 cut(s) 263
SspMI CTAG 1 cut(s) 606
SstI GAGCTC 1 cut(s) 234
StuI AGGCCT 1 cut(s) 326
TaaI ACNGT 4 cut(s) 158, 199, 416, 614
TaqI TCGA 1 cut(s) 555
TasI AATT 4 cut(s) 46, 134, 190, 202
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 2 cut(s) 237, 495
Tru9I TTAA 2 cut(s) 237, 495
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 1 cut(s) 608
TseI GCWGC 4 cut(s) 296, 314, 569, 654
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 2 cut(s) 541, 657
TspRI CASTG 1 cut(s) 403
VpaK11BI GGWCC 1 cut(s) 265
XagI CCTNNNNNAGG 1 cut(s) 239
XapI RAATTY 2 cut(s) 134, 202
XceI RCATGY 2 cut(s) 77, 340
XspI CTAG 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.