Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001047

Physical Location & Seq

Genomic Coordinates Reverse (-)

22586734 .. 22587816

Gene Structure 1083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012810

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGTGGGGTGGCGTTGCCAGCCTCCCCTTCTTAATTCTTCTGTTGGTGACGTCGATGGTGTTGCACGGGGGCTATGCTTCTGGCCCTCTGACGGTGGTGGAGCTTCAGTGGCTGTGGCGGTGCAGTGTTTGATTTCCGATCTCGTGCAGCCAAGTATTGGGTATTTTTCCTTGCTTGTCGGCTATGGGGATGGAGGTTTCCAGGGCGACGGTGTTCCTACTTGGGCTTTCTGGGCTGCTGATCGATCTGAGGATGGGGATGCTCAACGTGGTGGCTATTTAGGCTATGCTGGTGATGGTCTGAAGGAGGTCAGTAGAGGCGGCGGCATCTTTTCCGGTGACGGCGACATGGAACTTGGTAGTGGCTATGTTGTAGAGCAGCTGGTTGCTAGGGGTTCAGAAAATTTGGGCTGTTGGGCTCAAATTTTTCTATTGTTACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

15.28

Weight (kDa)

4.13

Isoelectric Point (pI)

22.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001047)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c11g0499391 RchiOBHm_Chr3g0447361 RchiOBHm_Chr7g0218341 RchiOBHm_Chr7g0226151 RchiOBHm_Chr7g0236171 RchiOBHm_Chr7g0236221
rosa_laevigata	RLG00000001100 RLG00000001939 RLG00000012810 RLG00000013102 RLG00000013301 RLG00000020513 RLG00000030019 RLG00000037087
rosa_multiflora	Rmu_sc0000570.1_g000004 Rmu_sc0010974.1_g000003 Rmu_sc0014688.1_g000003 Rmu_sc0040332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000490 Rroxscaffold_3G00225330 Rroxscaffold_3G00227720 Rroxscaffold_6G00410030 Rroxscaffold_7G00159290
rosa_rugosa	Rorug03G0036000 Rorug05G0301600 Rorug07G0294600 Rorug07G0294600 Rorug07G0294600 Rorug07G0295400 Rorug07G0295400
rosa_samantha	Rh1AG363600 Rh1BG122700 Rh1CG048900 Rh1CG366200 Rh1DG053200 Rh1DG383900 Rh2BG407500 Rh2CG090200 Rh2CG606900 Rh2DG420300 Rh2DG655300 Rh3DG114600 Rh4AG182100 Rh4CG412200 Rh4CG453300 Rh4DG240200 Rh4DG240300 Rh5AG138000 Rh5BG568100 Rh5DG205500 Rh6AG006600 Rh6AG084300 Rh6AG150400 Rh6BG073500 Rh6BG279100 Rh6CG073700 Rh6DG070600 Rh7AG101500 Rh7DG439100
rosa_wichuraiana	Rw2G020930 Rw7G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	54
AccB7I	CCANNNNNTGG	1 cut(s)	158
AciI	CCGC	3 cut(s)	119, 321, 324
AcsI	RAATTY	2 cut(s)	403, 423
AcuI	CTGAAG	2 cut(s)	90, 323
AcyI	GRCGYC	1 cut(s)	51
AfiI	CCNNNNNNNGG	2 cut(s)	92, 158
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	2 cut(s)	104, 382
AluI	AGCT	2 cut(s)	104, 382
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	1 cut(s)	83
ApeKI	GCWGC	3 cut(s)	148, 236, 379
ApoI	RAATTY	2 cut(s)	403, 423
AspS9I	GGNCC	1 cut(s)	84
AsuHPI	GGTGA	3 cut(s)	59, 305, 350
BanII	GRGCYC	1 cut(s)	421
BauI	CACGAG	1 cut(s)	143
BbvI	GCAGC	3 cut(s)	160, 223, 391
BccI	CCATC	4 cut(s)	50, 185, 248, 290
BceAI	ACGGC	1 cut(s)	358
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BciT130I	CCWGG	1 cut(s)	203
BfaI	CTAG	1 cut(s)	390
BisI	GCNGC	5 cut(s)	149, 237, 322, 325, 380
BlsI	GCNGC	5 cut(s)	150, 238, 323, 326, 381
Bme1390I	CCNGG	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	84
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	2 cut(s)	250, 336
Bsa29I	ATCGAT	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	202
BsaWI	WCCGGW	1 cut(s)	335
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 158
BseBI	CCWGG	1 cut(s)	203
BseCI	ATCGAT	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	3 cut(s)	196, 259, 265
BseLI	CCNNNNNNNGG	2 cut(s)	92, 158
BseMII	CTCAG	1 cut(s)	240
BseXI	GCAGC	3 cut(s)	160, 223, 391
BsgI	GTGCAG	2 cut(s)	143, 167
BshFI	GGCC	1 cut(s)	85
BshVI	ATCGAT	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	336
BslI	CCNNNNNNNGG	2 cut(s)	92, 158
BsnI	GGCC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	3 cut(s)	139, 241, 245
BspACI	CCGC	3 cut(s)	119, 321, 324
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	241
BspDI	ATCGAT	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	3 cut(s)	139, 241, 245
BssNI	GRCGYC	1 cut(s)	51
BssSI	CACGAG	1 cut(s)	143
Bst2BI	CACGAG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	2 cut(s)	95, 212
BstACI	GRCGYC	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	249
BstF5I	GGATG	3 cut(s)	196, 259, 265
BstKTI	GATC	3 cut(s)	142, 244, 248
BstMBI	GATC	3 cut(s)	139, 241, 245
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 110, 233, 282
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstV1I	GCAGC	3 cut(s)	160, 223, 391
Bsu15I	ATCGAT	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	85
BsuTUI	ATCGAT	1 cut(s)	244
BtsCI	GGATG	3 cut(s)	196, 259, 265
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	2 cut(s)	114, 131
Cac8I	GCNNGC	1 cut(s)	20
CaiI	CAGNNNCTG	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	84
ClaI	ATCGAT	1 cut(s)	244
CviAII	CATG	1 cut(s)	349
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	3 cut(s)	141, 243, 247
DpnII	GATC	3 cut(s)	139, 241, 245
Eco24I	GRGCYC	1 cut(s)	421
Eco57I	CTGAAG	2 cut(s)	90, 323
EcoRII	CCWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	421
FaeI	CATG	1 cut(s)	352
FaiI	YATR	5 cut(s)	76, 186, 288, 350, 369
FatI	CATG	1 cut(s)	348
Fnu4HI	GCNGC	5 cut(s)	149, 237, 322, 325, 380
FokI	GGATG	3 cut(s)	203, 266, 272
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	5 cut(s)	149, 237, 322, 325, 380
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	5 cut(s)	149, 237, 322, 325, 380
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	1 cut(s)	336
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	352
HpaII	CCGG	1 cut(s)	336
HphI	GGTGA	3 cut(s)	59, 305, 350
Hpy188I	TCNGA	5 cut(s)	91, 139, 250, 303, 400
Hpy99I	CGWCG	2 cut(s)	56, 212
HpyAV	CCTTC	2 cut(s)	38, 298
HpyCH4III	ACNGT	2 cut(s)	95, 212
HpyCH4IV	ACGT	2 cut(s)	51, 268
HpyCH4V	TGCA	3 cut(s)	65, 124, 148
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 110, 233, 282
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	2 cut(s)	51, 268
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	139, 241, 245
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	8 cut(s)	32, 67, 188, 215, 217, 276, 349, 368
Lsp1109I	GCAGC	3 cut(s)	160, 223, 391
LweI	GCATC	2 cut(s)	250, 336
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	2 cut(s)	51, 268
MaeIII	GTNAC	3 cut(s)	47, 338, 435
MalI	GATC	3 cut(s)	141, 243, 247
MboI	GATC	3 cut(s)	139, 241, 245
MboII	GAAGA	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	3 cut(s)	34, 403, 423
MnlI	CCTC	6 cut(s)	33, 97, 188, 244, 301, 311
MseI	TTAA	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	1 cut(s)	336
MspR9I	CCNGG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	4 cut(s)	19, 110, 233, 282
NdeII	GATC	3 cut(s)	139, 241, 245
NlaIII	CATG	1 cut(s)	352
NmuCI	GTSAC	2 cut(s)	47, 338
PflMI	CCANNNNNTGG	1 cut(s)	158
PkrI	GCNGC	5 cut(s)	150, 238, 323, 326, 381
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	84
PstNI	CAGNNNCTG	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	382
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	5 cut(s)	149, 237, 322, 325, 380
Sau3AI	GATC	3 cut(s)	139, 241, 245
Sau96I	GGNCC	1 cut(s)	84
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	6 cut(s)	54, 106, 199, 271, 312, 384
SfaNI	GCATC	2 cut(s)	250, 336
Sse9I	AATT	3 cut(s)	34, 403, 423
SsiI	CCGC	3 cut(s)	119, 321, 324
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	95, 212
TaiI	ACGT	2 cut(s)	54, 271
TaqI	TCGA	2 cut(s)	54, 244
TasI	AATT	3 cut(s)	34, 403, 423
TauI	GCSGC	2 cut(s)	324, 327
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	2 cut(s)	114, 131
TseFI	GTSAC	2 cut(s)	47, 338
TseI	GCWGC	3 cut(s)	148, 236, 379
Tsp45I	GTSAC	2 cut(s)	47, 338
TspRI	CASTG	2 cut(s)	114, 131
Van91I	CCANNNNNTGG	1 cut(s)	158
XapI	RAATTY	2 cut(s)	403, 423
XspI	CTAG	1 cut(s)	390
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.