Rh2CG606900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001047
Physical Location & Seq
Reverse (-)
78326707 .. 78331734
5028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG606900.1

Sequence Viewer

Length: 699 bp
ATGATTGATCGGAGGCCGAGCTCTAACGGAGTGGATCTGGTTTGGACTGAGTTGGATGGGCGAGTCTGGGTTTTGGACCCGGGTCGTCAGATTTCCGACGGTGATAGGGCTTGTACAATCGCTTTGGTTGGCCCTGGTGGTTCGCTGCAGCGTCATGGTGTTGCCGGAGTGGGGTTGGCCCGACCAGTTCAGGGGATCGATCAAAGCTTGGAGGATCTTCAGGTTGTCCTGGGCGCCTCCGATCGGGTTTTTCCCGATCTAGGATCTGGTTTCTTCAATGATTGCGAAGGCACTGGAATGGATCTGAAGTCGGTTCGAGGTGATAAGGAATGGGCGCGAACTTGGGTGTCCTTCGATCCTGGAGATGGTACAGTATCGTCGGCGGTGAACCACGGTGACGGCGGCTATGGGGATGGCGGTTTTCAGGGCGATGGAGCTCCTCCTTGGGCTCTATGGGCTGGTGATCGTTCTGGGGATGGGGTCTCTCAATGTGGTGGCTTTTTTGGCTATGCTGGTGATGGCCTGCAGGTGGTCAATAGGGGAGGCGGCGACGGCGACATGAAACTTGGGAGCGGCCATGTTGTGGAGCACTCCGAGGAGGAGGAGAAGAAGAAATGCTGCTCCTCTCTGGTAGTGTTCGCTCGGTTTGGCCATGTCTGTCTGTCTGATCGTGCCATTTCCAAAGCTGCTATCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

24.27

Weight (kDa)

4.81

Isoelectric Point (pI)

31.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 517
Acc36I ACCTGC 1 cut(s) 517
AccB1I GGYRCC 1 cut(s) 233
AccB7I CCANNNNNTGG 1 cut(s) 583
AccBSI CCGCTC 1 cut(s) 573
AccII CGCG 1 cut(s) 337
AciI CCGC 5 cut(s) 383, 402, 417, 546, 573
AclWI GGATC 6 cut(s) 42, 203, 222, 271, 309, 350
AcoI YGGCCR 2 cut(s) 574, 649
AcuI CTGAAG 2 cut(s) 203, 326
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 2 cut(s) 115, 370
AfiI CCNNNNNNNGG 7 cut(s) 171, 191, 243, 260, 365, 529, 583
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 3 cut(s) 133, 228, 358
AluBI AGCT 4 cut(s) 21, 207, 437, 686
AluI AGCT 4 cut(s) 21, 207, 437, 686
Alw21I GWGCWC 3 cut(s) 23, 439, 591
Alw26I GTCTC 1 cut(s) 487
AlwI GGATC 6 cut(s) 42, 203, 222, 271, 309, 350
Ama87I CYCGRG 1 cut(s) 79
AoxI GGCC 6 cut(s) 14, 130, 177, 520, 574, 649
ApeKI GCWGC 4 cut(s) 145, 148, 618, 686
AspLEI GCGC 2 cut(s) 236, 337
AspS9I GGNCC 3 cut(s) 76, 131, 178
AsuC2I CCSGG 2 cut(s) 80, 81
AsuHPI GGTGA 6 cut(s) 113, 332, 397, 407, 473, 527
AvaI CYCGRG 1 cut(s) 79
AvaII GGWCC 1 cut(s) 76
BalI TGGCCA 1 cut(s) 651
BanI GGYRCC 1 cut(s) 233
BanII GRGCYC 3 cut(s) 23, 439, 451
Bbv12I GWGCWC 3 cut(s) 23, 439, 591
BbvI GCAGC 4 cut(s) 132, 160, 605, 673
BccI CCATC 6 cut(s) 50, 359, 407, 425, 470, 512
BceAI ACGGC 2 cut(s) 415, 568
BciT130I CCWGG 3 cut(s) 135, 230, 360
BcnI CCSGG 2 cut(s) 80, 81
BcoDI GTCTC 1 cut(s) 487
BfaI CTAG 1 cut(s) 260
BfmI CTRYAG 2 cut(s) 146, 524
BfoI RGCGCY 1 cut(s) 237
BfuAI ACCTGC 1 cut(s) 517
BisI GCNGC 7 cut(s) 146, 149, 403, 547, 574, 619, 687
BlsI GCNGC 7 cut(s) 147, 150, 404, 548, 575, 620, 688
Bme1390I CCNGG 5 cut(s) 80, 81, 135, 230, 360
Bme18I GGWCC 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 79
BmgT120I GGNCC 3 cut(s) 76, 131, 178
BmiI GGNNCC 2 cut(s) 78, 235
BmrFI CCNGG 5 cut(s) 80, 81, 135, 230, 360
BoxI GACNNNNGTC 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 381
BpuMI CCSGG 2 cut(s) 80, 81
Bsa29I ATCGAT 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 487
BsaJI CCNNGG 6 cut(s) 79, 133, 229, 391, 443, 594
Bsc4I CCNNNNNNNGG 7 cut(s) 171, 191, 243, 260, 365, 529, 583
Bse1I ACTGG 2 cut(s) 185, 298
BseBI CCWGG 3 cut(s) 135, 230, 360
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 6 cut(s) 79, 133, 229, 391, 443, 594
BseGI GGATG 3 cut(s) 61, 418, 481
BseLI CCNNNNNNNGG 7 cut(s) 171, 191, 243, 260, 365, 529, 583
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 185, 298
BseRI GAGGAG 5 cut(s) 429, 611, 613, 614, 617
BseXI GCAGC 4 cut(s) 132, 160, 605, 673
Bsh1236I CGCG 1 cut(s) 337
Bsh1285I CGRYCG 1 cut(s) 244
BshFI GGCC 6 cut(s) 16, 132, 179, 522, 576, 651
BshNI GGYRCC 1 cut(s) 233
BshVI ATCGAT 1 cut(s) 198
BsiEI CGRYCG 1 cut(s) 244
BsiHKAI GWGCWC 3 cut(s) 23, 439, 591
BsiHKCI CYCGRG 1 cut(s) 79
BsiSI CCGG 2 cut(s) 80, 165
BslI CCNNNNNNNGG 7 cut(s) 171, 191, 243, 260, 365, 529, 583
BsmAI GTCTC 1 cut(s) 487
BsnI GGCC 6 cut(s) 16, 132, 179, 522, 576, 651
Bso31I GGTCTC 1 cut(s) 487
BsoBI CYCGRG 1 cut(s) 79
Bsp1286I GDGCHC 4 cut(s) 23, 439, 451, 591
Bsp1407I TGTACA 1 cut(s) 113
BspACI CCGC 5 cut(s) 383, 402, 417, 546, 573
BspANI GGCC 6 cut(s) 16, 132, 179, 522, 576, 651
BspCNI CTCAG 1 cut(s) 40
BspDI ATCGAT 1 cut(s) 198
BspFNI CGCG 1 cut(s) 337
BspLI GGNNCC 2 cut(s) 78, 235
BspMAI CTGCAG 2 cut(s) 150, 528
BspMI ACCTGC 1 cut(s) 517
BspPI GGATC 6 cut(s) 42, 203, 222, 271, 309, 350
BspT107I GGYRCC 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 487
BsrBI CCGCTC 1 cut(s) 573
BsrGI TGTACA 1 cut(s) 113
BsrI ACTGG 2 cut(s) 185, 298
BssECI CCNNGG 6 cut(s) 79, 133, 229, 391, 443, 594
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 443
Bst2UI CCWGG 3 cut(s) 135, 230, 360
Bst4CI ACNGT 3 cut(s) 101, 373, 395
BstACI GRCGYC 1 cut(s) 234
BstAUI TGTACA 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 524
BstDEI CTNAG 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 391
BstF5I GGATG 3 cut(s) 61, 418, 481
BstFNI CGCG 1 cut(s) 337
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 2 cut(s) 236, 337
BstMAI GTCTC 1 cut(s) 487
BstMCI CGRYCG 1 cut(s) 244
BstMWI GCNNNNNNNGC 3 cut(s) 455, 504, 552
BstNI CCWGG 3 cut(s) 135, 230, 360
BstPAI GACNNNNGTC 1 cut(s) 81
BstSCI CCNGG 5 cut(s) 78, 79, 133, 228, 358
BstSFI CTRYAG 2 cut(s) 146, 524
BstUI CGCG 1 cut(s) 337
BstV1I GCAGC 4 cut(s) 132, 160, 605, 673
BstX2I RGATCY 4 cut(s) 34, 214, 263, 301
BstYI RGATCY 4 cut(s) 34, 214, 263, 301
Bsu15I ATCGAT 1 cut(s) 198
BsuRI GGCC 6 cut(s) 16, 132, 179, 522, 576, 651
BsuTUI ATCGAT 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 391
BtgZI GCGATG 1 cut(s) 444
BtsCI GGATG 3 cut(s) 61, 418, 481
BtsIMutI CAGTG 1 cut(s) 291
BveI ACCTGC 1 cut(s) 517
Cac8I GCNNGC 1 cut(s) 524
CfoI GCGC 2 cut(s) 236, 337
Cfr13I GGNCC 3 cut(s) 76, 131, 178
Cfr9I CCCGGG 1 cut(s) 79
ClaI ATCGAT 1 cut(s) 198
CseI GACGC 1 cut(s) 140
Csp6I GTAC 2 cut(s) 114, 369
CviAII CATG 4 cut(s) 155, 559, 578, 653
CviQI GTAC 2 cut(s) 114, 369
DdeI CTNAG 1 cut(s) 48
DinI GGCGCC 1 cut(s) 235
EaeI YGGCCR 2 cut(s) 574, 649
Ecl136II GAGCTC 2 cut(s) 21, 437
Eco130I CCWWGG 1 cut(s) 443
Eco24I GRGCYC 3 cut(s) 23, 439, 451
Eco31I GGTCTC 1 cut(s) 487
Eco47I GGWCC 1 cut(s) 76
Eco53kI GAGCTC 2 cut(s) 21, 437
Eco57I CTGAAG 2 cut(s) 203, 326
Eco88I CYCGRG 1 cut(s) 79
EcoICRI GAGCTC 2 cut(s) 21, 437
EcoRII CCWGG 3 cut(s) 133, 228, 358
EcoT14I CCWWGG 1 cut(s) 443
EcoT38I GRGCYC 3 cut(s) 23, 439, 451
EgeI GGCGCC 1 cut(s) 235
EheI GGCGCC 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 443
FaeI CATG 4 cut(s) 158, 562, 581, 656
FaiI YATR 7 cut(s) 156, 408, 454, 510, 560, 579, 654
FatI CATG 4 cut(s) 154, 558, 577, 652
Fnu4HI GCNGC 7 cut(s) 146, 149, 403, 547, 574, 619, 687
FokI GGATG 3 cut(s) 68, 425, 488
FriOI GRGCYC 3 cut(s) 23, 439, 451
Fsp4HI GCNGC 7 cut(s) 146, 149, 403, 547, 574, 619, 687
FspBI CTAG 1 cut(s) 260
GlaI GCGC 2 cut(s) 235, 336
GluI GCNGC 7 cut(s) 146, 149, 403, 547, 574, 619, 687
GsuI CTGGAG 1 cut(s) 381
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 6 cut(s) 16, 132, 179, 522, 576, 651
HapII CCGG 2 cut(s) 80, 165
HgaI GACGC 1 cut(s) 140
HhaI GCGC 2 cut(s) 236, 337
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 4 cut(s) 158, 562, 581, 656
Hin6I GCGC 2 cut(s) 234, 335
HinP1I GCGC 2 cut(s) 234, 335
HindIII AAGCTT 1 cut(s) 205
HinfI GANTC 1 cut(s) 63
HpaII CCGG 2 cut(s) 80, 165
HphI GGTGA 6 cut(s) 113, 332, 397, 407, 473, 527
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 7 cut(s) 12, 90, 97, 241, 306, 595, 667
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 388
Hpy99I CGWCG 3 cut(s) 101, 382, 554
HpyAV CCTTC 2 cut(s) 281, 361
HpyCH4III ACNGT 3 cut(s) 101, 373, 395
HpyCH4V TGCA 2 cut(s) 148, 526
HpyF10VI GCNNNNNNNGC 3 cut(s) 455, 504, 552
HpyF3I CTNAG 1 cut(s) 48
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 4 cut(s) 158, 562, 581, 656
HspAI GCGC 2 cut(s) 234, 335
KasI GGCGCC 1 cut(s) 233
LmnI GCTCC 5 cut(s) 434, 442, 570, 586, 626
Lsp1109I GCAGC 4 cut(s) 132, 160, 605, 673
MaeI CTAG 1 cut(s) 260
MaeIII GTNAC 1 cut(s) 395
MbiI CCGCTC 1 cut(s) 573
MboII GAAGA 4 cut(s) 209, 265, 619, 622
MflI RGATCY 4 cut(s) 34, 214, 263, 301
MhlI GDGCHC 4 cut(s) 23, 439, 451, 591
MlsI TGGCCA 1 cut(s) 651
MluNI TGGCCA 1 cut(s) 651
Mly113I GGCGCC 1 cut(s) 234
MlyI GAGTC 1 cut(s) 72
MmeI TCCRAC 2 cut(s) 33, 120
Mox20I TGGCCA 1 cut(s) 651
MscI TGGCCA 1 cut(s) 651
MslI CAYNNNNRTG 1 cut(s) 296
Msp20I TGGCCA 1 cut(s) 651
MspI CCGG 2 cut(s) 80, 165
MspR9I CCNGG 5 cut(s) 80, 81, 135, 230, 360
MvaI CCWGG 3 cut(s) 135, 230, 360
MvnI CGCG 1 cut(s) 337
MwoI GCNNNNNNNGC 3 cut(s) 455, 504, 552
NarI GGCGCC 1 cut(s) 234
NciI CCSGG 2 cut(s) 80, 81
NlaIII CATG 4 cut(s) 158, 562, 581, 656
NlaIV GGNNCC 2 cut(s) 78, 235
NmeAIII GCCGAG 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 395
PaqCI CACCTGC 1 cut(s) 517
PflMI CCANNNNNTGG 1 cut(s) 583
PfoI TCCNGGA 1 cut(s) 358
PkrI GCNGC 7 cut(s) 147, 150, 404, 548, 575, 620, 688
Ple19I CGATCG 1 cut(s) 244
PleI GAGTC 1 cut(s) 71
PluTI GGCGCC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 71
PshAI GACNNNNGTC 1 cut(s) 81
Psp124BI GAGCTC 2 cut(s) 23, 439
Psp6I CCWGG 3 cut(s) 133, 228, 358
PspGI CCWGG 3 cut(s) 133, 228, 358
PspN4I GGNNCC 2 cut(s) 78, 235
PspPI GGNCC 3 cut(s) 76, 131, 178
PstI CTGCAG 2 cut(s) 150, 528
PsuI RGATCY 4 cut(s) 34, 214, 263, 301
PvuI CGATCG 1 cut(s) 244
RsaI GTAC 2 cut(s) 115, 370
RsaNI GTAC 2 cut(s) 114, 369
RseI CAYNNNNRTG 1 cut(s) 296
SacI GAGCTC 2 cut(s) 23, 439
SatI GCNGC 7 cut(s) 146, 149, 403, 547, 574, 619, 687
Sau96I GGNCC 3 cut(s) 76, 131, 178
SbfI CCTGCAGG 1 cut(s) 528
SchI GAGTC 1 cut(s) 72
ScrFI CCNGG 5 cut(s) 80, 81, 135, 230, 360
SdaI CCTGCAGG 1 cut(s) 528
SduI GDGCHC 4 cut(s) 23, 439, 451, 591
SetI ASST 7 cut(s) 23, 209, 225, 322, 439, 531, 688
SfcI CTRYAG 2 cut(s) 146, 524
SfoI GGCGCC 1 cut(s) 235
SinI GGWCC 1 cut(s) 76
SmaI CCCGGG 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse8387I CCTGCAGG 1 cut(s) 528
SsiI CCGC 5 cut(s) 383, 402, 417, 546, 573
SspDI GGCGCC 1 cut(s) 233
SspMI CTAG 1 cut(s) 260
SstI GAGCTC 2 cut(s) 23, 439
StyD4I CCNGG 5 cut(s) 78, 79, 133, 228, 358
StyI CCWWGG 1 cut(s) 443
TaaI ACNGT 3 cut(s) 101, 373, 395
TaqI TCGA 3 cut(s) 198, 316, 354
TatI WGTACW 1 cut(s) 113
TauI GCSGC 3 cut(s) 405, 549, 576
TscAI CASTG 1 cut(s) 298
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 4 cut(s) 145, 148, 618, 686
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 1 cut(s) 575
TspGWI ACGGA 1 cut(s) 42
TspMI CCCGGG 1 cut(s) 79
TspRI CASTG 1 cut(s) 298
Van91I CCANNNNNTGG 1 cut(s) 583
VpaK11BI GGWCC 1 cut(s) 76
XmaI CCCGGG 1 cut(s) 79
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.