Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001047

Physical Location & Seq

Genomic Coordinates Reverse (-)

57771446 .. 57771769

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG407500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTGCTTGGAGGATCTTCAGGTTGTCCTGGGCGCCTTCGATCGGGTTCATCCCGATCTCGGATCTGGTTTCTTCAATGCTTGCGACGGCACCGGGATGGATCTGAAGTTGGTTCGAGGTGATCAGGAATGGGAGTGGCTTTGGGTATCTTTCGATCATGGAGATGGTACAGTATCGTCGGCGGTGAAGCACGATGACGGCGGCTATGGGGATGCAGGTTTTCAGGGCGACGGTGCTCCTACTTGGGCTCTCTGGGCTGGTGATCGTTCTGGGGATGGGATGCTTAACGTGGTGGCTTTTTTGGCTATGCTGGTGGTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.42

Weight (kDa)

4.09

Isoelectric Point (pI)

20.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001047)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c11g0499391 RchiOBHm_Chr3g0447361 RchiOBHm_Chr7g0218341 RchiOBHm_Chr7g0226151 RchiOBHm_Chr7g0236171 RchiOBHm_Chr7g0236221
rosa_laevigata	RLG00000001100 RLG00000001939 RLG00000012810 RLG00000013102 RLG00000013301 RLG00000020513 RLG00000030019 RLG00000037087
rosa_multiflora	Rmu_sc0000570.1_g000004 Rmu_sc0010974.1_g000003 Rmu_sc0014688.1_g000003 Rmu_sc0040332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000490 Rroxscaffold_3G00225330 Rroxscaffold_3G00227720 Rroxscaffold_6G00410030 Rroxscaffold_7G00159290
rosa_rugosa	Rorug03G0036000 Rorug05G0301600 Rorug07G0294600 Rorug07G0294600 Rorug07G0294600 Rorug07G0295400 Rorug07G0295400
rosa_samantha	Rh1AG363600 Rh1BG122700 Rh1CG048900 Rh1CG366200 Rh1DG053200 Rh1DG383900 Rh2BG407500 Rh2CG090200 Rh2CG606900 Rh2DG420300 Rh2DG655300 Rh3DG114600 Rh4AG182100 Rh4CG412200 Rh4CG453300 Rh4DG240200 Rh4DG240300 Rh5AG138000 Rh5BG568100 Rh5DG205500 Rh6AG006600 Rh6AG084300 Rh6AG150400 Rh6BG073500 Rh6BG279100 Rh6CG073700 Rh6DG070600 Rh7AG101500 Rh7DG439100
rosa_wichuraiana	Rw2G020930 Rw7G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	206
AccB1I	GGYRCC	2 cut(s)	32, 89
AciI	CCGC	2 cut(s)	182, 201
AclWI	GGATC	3 cut(s)	21, 70, 108
AcuI	CTGAAG	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	2 cut(s)	42, 59
AgsI	TTSAA	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	27
Alw21I	GWGCWC	1 cut(s)	238
AlwI	GGATC	3 cut(s)	21, 70, 108
AoxI	GGCC	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	3 cut(s)	131, 196, 272
BanI	GGYRCC	2 cut(s)	32, 89
BanII	GRGCYC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	238
BccI	CCATC	3 cut(s)	91, 158, 269
BceAI	ACGGC	2 cut(s)	103, 214
BciT130I	CCWGG	1 cut(s)	29
BclI	TGATCA	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	94
BfoI	RGCGCY	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	202
BlsI	GCNGC	1 cut(s)	203
Bme1390I	CCNGG	2 cut(s)	29, 94
BmiI	GGNNCC	2 cut(s)	34, 91
BmrFI	CCNGG	2 cut(s)	29, 94
BmsI	GCATC	2 cut(s)	202, 270
BpuMI	CCSGG	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 59
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	5 cut(s)	49, 102, 217, 280, 285
BseLI	CCNNNNNNNGG	2 cut(s)	42, 59
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	320
BshNI	GGYRCC	2 cut(s)	32, 89
BsiEI	CGRYCG	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	42, 59
BsnI	GGCC	1 cut(s)	320
Bsp1286I	GDGCHC	2 cut(s)	238, 250
Bsp143I	GATC	8 cut(s)	13, 40, 55, 62, 100, 121, 154, 262
BspACI	CCGC	2 cut(s)	182, 201
BspANI	GGCC	1 cut(s)	320
BspLI	GGNNCC	2 cut(s)	34, 91
BspMI	ACCTGC	1 cut(s)	206
BspPI	GGATC	3 cut(s)	21, 70, 108
BspT107I	GGYRCC	2 cut(s)	32, 89
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	8 cut(s)	13, 40, 55, 62, 100, 121, 154, 262
BssNI	GRCGYC	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	172, 233
BstACI	GRCGYC	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	82
BstF5I	GGATG	5 cut(s)	49, 102, 217, 280, 285
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	8 cut(s)	16, 43, 58, 65, 103, 124, 157, 265
BstMBI	GATC	8 cut(s)	13, 40, 55, 62, 100, 121, 154, 262
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 302
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	2 cut(s)	27, 92
BstX2I	RGATCY	3 cut(s)	13, 62, 100
BstYI	RGATCY	3 cut(s)	13, 62, 100
BsuRI	GGCC	1 cut(s)	320
BtsCI	GGATG	5 cut(s)	49, 102, 217, 280, 285
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	1 cut(s)	82
CfoI	GCGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	7 cut(s)	139, 204, 248, 257, 296, 305, 320
CviKI_1	RGCY	7 cut(s)	139, 204, 248, 257, 296, 305, 320
CviQI	GTAC	1 cut(s)	168
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	8 cut(s)	15, 42, 57, 64, 102, 123, 156, 264
DpnII	GATC	8 cut(s)	13, 40, 55, 62, 100, 121, 154, 262
Eco24I	GRGCYC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	250
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
FaeI	CATG	1 cut(s)	161
FaiI	YATR	3 cut(s)	159, 207, 308
FatI	CATG	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	202
FokI	GGATG	5 cut(s)	36, 109, 224, 287, 292
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	202
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	202
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	320
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	161
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	3 cut(s)	131, 196, 272
Hpy188I	TCNGA	2 cut(s)	62, 105
Hpy188III	TCNNGA	2 cut(s)	53, 125
Hpy99I	CGWCG	3 cut(s)	89, 181, 233
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	2 cut(s)	172, 233
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 302
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	161
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	8 cut(s)	13, 40, 55, 62, 100, 121, 154, 262
LmnI	GCTCC	1 cut(s)	241
LweI	GCATC	2 cut(s)	202, 270
MaeII	ACGT	1 cut(s)	288
MalI	GATC	8 cut(s)	15, 42, 57, 64, 102, 123, 156, 264
MboI	GATC	8 cut(s)	13, 40, 55, 62, 100, 121, 154, 262
MboII	GAAGA	2 cut(s)	8, 64
MflI	RGATCY	3 cut(s)	13, 62, 100
MhlI	GDGCHC	2 cut(s)	238, 250
Mly113I	GGCGCC	1 cut(s)	33
MnlI	CCTC	2 cut(s)	4, 110
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	2 cut(s)	95, 162
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	29, 94
MvaI	CCWGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	254, 302
NarI	GGCGCC	1 cut(s)	33
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	8 cut(s)	13, 40, 55, 62, 100, 121, 154, 262
NlaIII	CATG	1 cut(s)	161
NlaIV	GGNNCC	2 cut(s)	34, 91
PkrI	GCNGC	1 cut(s)	203
Ple19I	CGATCG	1 cut(s)	43
PluTI	GGCGCC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	34, 91
PsuI	RGATCY	3 cut(s)	13, 62, 100
PvuI	CGATCG	1 cut(s)	43
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
RseI	CAYNNNNRTG	2 cut(s)	95, 162
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	202
Sau3AI	GATC	8 cut(s)	13, 40, 55, 62, 100, 121, 154, 262
ScrFI	CCNGG	2 cut(s)	29, 94
SduI	GDGCHC	2 cut(s)	238, 250
SetI	ASST	4 cut(s)	24, 121, 220, 291
SfaNI	GCATC	2 cut(s)	202, 270
SfoI	GGCGCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	2 cut(s)	95, 162
SsiI	CCGC	2 cut(s)	182, 201
SspDI	GGCGCC	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	27, 92
TaaI	ACNGT	2 cut(s)	172, 233
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	3 cut(s)	39, 115, 153
TauI	GCSGC	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TspDTI	ATGAA	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.