Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001047

Physical Location & Seq

Genomic Coordinates Forward (+)

22751651 .. 22753042

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG205500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGTCATGGCTATTGCTCGTCTGGTAGCTAATCGTTCCTTTCTTGTTTTTGCTTTTGTGTTCTTGCTCGGAGAGCCGCCTTGGTGTGGGCTCCATGTGGTTTCTGATTGGAAGGGTAGTGTTGCTGTTTGGATGGTTGATCGGAGGCCGAGCTCTAACGGCGTGGATCTGCGTCAGGGTGTTGCAGGAGTGGGGTTGGCCCGACCAGTTCAGGGGAGCGATCAAAGTTTGGAGGATCTTCAGGTTGTCCTGGGCGACTCCGATCGGGTTCAGTCCGATCTAGGATCTGGTTCCTTCAATGCTTGCGAAGGCACCGGAATGGATCTGAAGTTGGTCCGAGGTGATCCGGAATGGGAACGGATTTGGGTGTCTTTCGGTCTTGGAGATGATATATATAAAAGATACTATTCCAATTCGAGAGCGTCAATACCCACTTTCAGCCAACATCAACCATTTTCATCAAAATTGACATCAGGCTTGCTCCGACACTTGGATTTGGGTGCTGATCTCGGACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

18.82

Weight (kDa)

5.54

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001047)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c11g0499391 RchiOBHm_Chr3g0447361 RchiOBHm_Chr7g0218341 RchiOBHm_Chr7g0226151 RchiOBHm_Chr7g0236171 RchiOBHm_Chr7g0236221
rosa_laevigata	RLG00000001100 RLG00000001939 RLG00000012810 RLG00000013102 RLG00000013301 RLG00000020513 RLG00000030019 RLG00000037087
rosa_multiflora	Rmu_sc0000570.1_g000004 Rmu_sc0010974.1_g000003 Rmu_sc0014688.1_g000003 Rmu_sc0040332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000490 Rroxscaffold_3G00225330 Rroxscaffold_3G00227720 Rroxscaffold_6G00410030 Rroxscaffold_7G00159290
rosa_rugosa	Rorug03G0036000 Rorug05G0301600 Rorug07G0294600 Rorug07G0294600 Rorug07G0294600 Rorug07G0295400 Rorug07G0295400
rosa_samantha	Rh1AG363600 Rh1BG122700 Rh1CG048900 Rh1CG366200 Rh1DG053200 Rh1DG383900 Rh2BG407500 Rh2CG090200 Rh2CG606900 Rh2DG420300 Rh2DG655300 Rh3DG114600 Rh4AG182100 Rh4CG412200 Rh4CG453300 Rh4DG240200 Rh4DG240300 Rh5AG138000 Rh5BG568100 Rh5DG205500 Rh6AG006600 Rh6AG084300 Rh6AG150400 Rh6BG073500 Rh6BG279100 Rh6CG073700 Rh6DG070600 Rh7AG101500 Rh7DG439100
rosa_wichuraiana	Rw2G020930 Rw7G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	311
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	5 cut(s)	174, 243, 292, 330, 338
AcuI	CTGAAG	2 cut(s)	224, 347
AfiI	CCNNNNNNNGG	3 cut(s)	86, 212, 490
AgsI	TTSAA	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	2 cut(s)	29, 153
AluI	AGCT	2 cut(s)	29, 153
Alw21I	GWGCWC	1 cut(s)	155
AlwI	GGATC	5 cut(s)	174, 243, 292, 330, 338
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	2 cut(s)	146, 198
AspS9I	GGNCC	2 cut(s)	199, 334
AsuHPI	GGTGA	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	334
BanI	GGYRCC	1 cut(s)	311
BanII	GRGCYC	2 cut(s)	93, 155
Bbv12I	GWGCWC	1 cut(s)	155
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	251
BfaI	CTAG	1 cut(s)	281
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	334
BmgT120I	GGNCC	2 cut(s)	199, 334
BmiI	GGNNCC	3 cut(s)	92, 292, 313
BmrFI	CCNGG	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	80, 250, 337
BsaWI	WCCGGW	2 cut(s)	314, 346
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 212, 490
Bse1I	ACTGG	1 cut(s)	206
BseAI	TCCGGA	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	3 cut(s)	80, 250, 337
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	3 cut(s)	86, 212, 490
BseNI	ACTGG	1 cut(s)	206
Bsh1285I	CGRYCG	1 cut(s)	265
BshFI	GGCC	2 cut(s)	148, 200
BshNI	GGYRCC	1 cut(s)	311
BsiEI	CGRYCG	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	315, 347
BslI	CCNNNNNNNGG	3 cut(s)	86, 212, 490
BsnI	GGCC	2 cut(s)	148, 200
Bsp1286I	GDGCHC	2 cut(s)	93, 155
Bsp13I	TCCGGA	1 cut(s)	346
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	2 cut(s)	148, 200
BspEI	TCCGGA	1 cut(s)	346
BspLI	GGNNCC	3 cut(s)	92, 292, 313
BspPI	GGATC	5 cut(s)	174, 243, 292, 330, 338
BspT107I	GGYRCC	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	3 cut(s)	80, 250, 337
BssT1I	CCWWGG	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	304, 479
BstF5I	GGATG	1 cut(s)	138
BstMCI	CGRYCG	1 cut(s)	265
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 159
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	249
BstX2I	RGATCY	4 cut(s)	166, 235, 284, 322
BstYI	RGATCY	4 cut(s)	166, 235, 284, 322
BsuRI	GGCC	2 cut(s)	148, 200
BtsCI	GGATG	1 cut(s)	138
Cac8I	GCNNGC	2 cut(s)	304, 479
Cfr13I	GGNCC	2 cut(s)	199, 334
CseI	GACGC	2 cut(s)	161, 411
CviAII	CATG	2 cut(s)	7, 95
CviJI	RGCY	9 cut(s)	11, 29, 76, 91, 148, 153, 200, 441, 477
CviKI_1	RGCY	9 cut(s)	11, 29, 76, 91, 148, 153, 200, 441, 477
Ecl136II	GAGCTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	80
Eco24I	GRGCYC	2 cut(s)	93, 155
Eco47I	GGWCC	1 cut(s)	334
Eco53kI	GAGCTC	1 cut(s)	153
Eco57I	CTGAAG	2 cut(s)	224, 347
EcoICRI	GAGCTC	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	80
EcoT38I	GRGCYC	2 cut(s)	93, 155
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	2 cut(s)	10, 98
FaiI	YATR	5 cut(s)	8, 96, 392, 394, 396
FatI	CATG	2 cut(s)	6, 94
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	1 cut(s)	145
FriOI	GRGCYC	2 cut(s)	93, 155
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	148, 200
HapII	CCGG	2 cut(s)	315, 347
HgaI	GACGC	2 cut(s)	161, 411
Hin1II	CATG	2 cut(s)	10, 98
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	2 cut(s)	315, 347
HphI	GGTGA	1 cut(s)	353
Hpy188I	TCNGA	9 cut(s)	71, 106, 144, 262, 277, 327, 338, 485, 512
Hpy188III	TCNNGA	2 cut(s)	347, 417
HpyAV	CCTTC	3 cut(s)	106, 302, 304
HpyCH4V	TGCA	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 159
Hsp92II	CATG	2 cut(s)	10, 98
Kpn2I	TCCGGA	1 cut(s)	346
LmnI	GCTCC	3 cut(s)	96, 216, 486
MaeI	CTAG	1 cut(s)	281
MboII	GAAGA	1 cut(s)	230
MflI	RGATCY	4 cut(s)	166, 235, 284, 322
MhlI	GDGCHC	2 cut(s)	93, 155
MluCI	AATT	2 cut(s)	412, 464
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	508
MnlI	CCTC	3 cut(s)	138, 226, 332
MroI	TCCGGA	1 cut(s)	346
MslI	CAYNNNNRTG	1 cut(s)	317
MspI	CCGG	2 cut(s)	315, 347
MspR9I	CCNGG	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	2 cut(s)	73, 159
NlaIII	CATG	2 cut(s)	10, 98
NlaIV	GGNNCC	3 cut(s)	92, 292, 313
NmeAIII	GCCGAG	1 cut(s)	174
PkrI	GCNGC	1 cut(s)	78
Ple19I	CGATCG	1 cut(s)	265
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	3 cut(s)	92, 292, 313
PspPI	GGNCC	2 cut(s)	199, 334
PsuI	RGATCY	4 cut(s)	166, 235, 284, 322
PvuI	CGATCG	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	317
SacI	GAGCTC	1 cut(s)	155
SatI	GCNGC	1 cut(s)	77
Sau96I	GGNCC	2 cut(s)	199, 334
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	2 cut(s)	93, 155
SetI	ASST	4 cut(s)	31, 155, 246, 343
SinI	GGWCC	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	317
Sse9I	AATT	2 cut(s)	412, 464
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	1 cut(s)	281
SstI	GAGCTC	1 cut(s)	155
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	80
TaqI	TCGA	1 cut(s)	416
TaqII	GACCGA	1 cut(s)	365
TasI	AATT	2 cut(s)	412, 464
TauI	GCSGC	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	447
TspGWI	ACGGA	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	334
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.