Rh1BG122700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001047
Physical Location & Seq
Forward (+)
20769888 .. 20772706
2819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG122700.1

Sequence Viewer

Length: 471 bp
ATGGATCGGAAGTGGGTTCGAGGTGATCAGGAATGGGCGCGGATTTGGGTGTCTTTCGATCCTGGAGATGGGACAGTATCGCCGGCGGTGACCCACGGTGACGGCGGATATGGGGATGGAGGTTTCCAGGGCGACGGTGCTCCTACTTGGGCTCTCTGGGTGGGTGATCGTTCTGGGGATGGGGATGCACAACGTGTTGACTTTTTTGGCTATGCTTGTGATGGCCTGAAGGAGGTCAGTAGGGCCGGATTTGGGATCTCGATTCGCGAGGCAGGCTGGGAAGCGTCGCTACAGGGATTCAAAGAGGACGGCGCCGCTGCAGATGGAGGCGGCGGCGGCAGTGTGGCTGAGAAGGTTTTGAATCCAATGAATAATGATGCGGAAAAGGTTTCGACTCCTTTGAATTTGATACCAGTAAAGGTTCAACAGGTGAGAGAAAAAGGCAAAAGCTTCCATTTCCTTCCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

16.62

Weight (kDa)

4.76

Isoelectric Point (pI)

21.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 311
AccII CGCG 2 cut(s) 40, 267
AciI CCGC 8 cut(s) 40, 86, 105, 315, 330, 333, 336, 380
AclWI GGATC 3 cut(s) 12, 53, 263
AcsI RAATTY 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 248
AcyI GRCGYC 1 cut(s) 312
AdeI CACNNNGTG 1 cut(s) 194
AfiI CCNNNNNNNGG 3 cut(s) 68, 232, 252
AflIII ACRYGT 1 cut(s) 193
AgsI TTSAA 4 cut(s) 301, 361, 403, 425
AjnI CCWGG 2 cut(s) 61, 126
AluBI AGCT 1 cut(s) 450
AluI AGCT 1 cut(s) 450
Alw21I GWGCWC 1 cut(s) 142
AlwI GGATC 3 cut(s) 12, 53, 263
AoxI GGCC 2 cut(s) 223, 243
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 403
AspLEI GCGC 2 cut(s) 40, 314
AspS9I GGNCC 1 cut(s) 243
AsuHPI GGTGA 5 cut(s) 35, 100, 110, 176, 442
BanI GGYRCC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 154
BarI GAAGNNNNNNTAC 2 cut(s) 273, 305
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 304
BccI CCATC 5 cut(s) 62, 110, 173, 215, 317
BceAI ACGGC 2 cut(s) 118, 325
BciT130I CCWGG 2 cut(s) 63, 128
BclI TGATCA 1 cut(s) 25
BfmI CTRYAG 2 cut(s) 290, 318
BfoI RGCGCY 1 cut(s) 315
BisI GCNGC 5 cut(s) 315, 318, 331, 334, 337
BlsI GCNGC 5 cut(s) 316, 319, 332, 335, 338
Bme1390I CCNGG 2 cut(s) 63, 128
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 2 cut(s) 63, 128
BmsI GCATC 2 cut(s) 175, 367
BpmI CTGGAG 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 94, 127
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 232, 252
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 413
BseBI CCWGG 2 cut(s) 63, 128
BseDI CCNNGG 2 cut(s) 94, 127
BseGI GGATG 3 cut(s) 121, 184, 190
BseLI CCNNNNNNNGG 3 cut(s) 68, 232, 252
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 413
BseXI GCAGC 1 cut(s) 304
BseYI CCCAGC 1 cut(s) 276
Bsh1236I CGCG 2 cut(s) 40, 267
BshFI GGCC 2 cut(s) 225, 245
BshNI GGYRCC 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 142
BsiSI CCGG 2 cut(s) 83, 246
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 3 cut(s) 68, 232, 252
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 2 cut(s) 225, 245
Bsp1286I GDGCHC 2 cut(s) 142, 154
Bsp143I GATC 5 cut(s) 4, 25, 58, 166, 255
Bsp68I TCGCGA 1 cut(s) 267
BspACI CCGC 8 cut(s) 40, 86, 105, 315, 330, 333, 336, 380
BspANI GGCC 2 cut(s) 225, 245
BspCNI CTCAG 1 cut(s) 340
BspFNI CGCG 2 cut(s) 40, 267
BspLI GGNNCC 1 cut(s) 313
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 3 cut(s) 12, 53, 263
BspT107I GGYRCC 1 cut(s) 311
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 1 cut(s) 413
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 94, 127
BssMI GATC 5 cut(s) 4, 25, 58, 166, 255
BssNI GRCGYC 1 cut(s) 312
Bst2UI CCWGG 2 cut(s) 63, 128
Bst4CI ACNGT 3 cut(s) 76, 98, 137
BstACI GRCGYC 1 cut(s) 312
BstC8I GCNNGC 2 cut(s) 84, 274
BstDEI CTNAG 1 cut(s) 348
BstDSI CCRYGG 1 cut(s) 94
BstEII GGTNACC 1 cut(s) 88
BstENI CCTNNNNNAGG 1 cut(s) 230
BstF5I GGATG 3 cut(s) 121, 184, 190
BstFNI CGCG 2 cut(s) 40, 267
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 2 cut(s) 40, 314
BstKTI GATC 5 cut(s) 7, 28, 61, 169, 258
BstMBI GATC 5 cut(s) 4, 25, 58, 166, 255
BstMWI GCNNNNNNNGC 2 cut(s) 273, 336
BstNI CCWGG 2 cut(s) 63, 128
BstPI GGTNACC 1 cut(s) 88
BstSCI CCNGG 2 cut(s) 61, 126
BstSFI CTRYAG 2 cut(s) 290, 318
BstUI CGCG 2 cut(s) 40, 267
BstV1I GCAGC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 255
BstYI RGATCY 1 cut(s) 255
BsuRI GGCC 2 cut(s) 225, 245
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 3 cut(s) 121, 184, 190
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 346
BtuMI TCGCGA 1 cut(s) 267
Cac8I GCNNGC 2 cut(s) 84, 274
CfoI GCGC 2 cut(s) 40, 314
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 243
CseI GACGC 1 cut(s) 273
CviJI RGCY 7 cut(s) 152, 210, 225, 245, 276, 347, 450
CviKI_1 RGCY 7 cut(s) 152, 210, 225, 245, 276, 347, 450
DdeI CTNAG 1 cut(s) 348
DinI GGCGCC 1 cut(s) 313
DpnI GATC 5 cut(s) 6, 27, 60, 168, 257
DpnII GATC 5 cut(s) 4, 25, 58, 166, 255
DraIII CACNNNGTG 1 cut(s) 194
EciI GGCGGA 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 248
Eco91I GGTNACC 1 cut(s) 88
EcoNI CCTNNNNNAGG 1 cut(s) 230
EcoO65I GGTNACC 1 cut(s) 88
EcoRII CCWGG 2 cut(s) 61, 126
EcoT38I GRGCYC 1 cut(s) 154
EgeI GGCGCC 1 cut(s) 313
EheI GGCGCC 1 cut(s) 313
FaiI YATR 2 cut(s) 111, 213
FaqI GGGAC 1 cut(s) 85
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 5 cut(s) 315, 318, 331, 334, 337
FokI GGATG 3 cut(s) 128, 191, 197
FriOI GRGCYC 1 cut(s) 154
Fsp4HI GCNGC 5 cut(s) 315, 318, 331, 334, 337
GlaI GCGC 2 cut(s) 39, 313
GluI GCNGC 5 cut(s) 315, 318, 331, 334, 337
GsaI CCCAGC 1 cut(s) 280
GsuI CTGGAG 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 315
HaeIII GGCC 2 cut(s) 225, 245
HapII CCGG 2 cut(s) 83, 246
HgaI GACGC 1 cut(s) 273
HhaI GCGC 2 cut(s) 40, 314
Hin1I GRCGYC 1 cut(s) 312
Hin6I GCGC 2 cut(s) 38, 312
HinP1I GCGC 2 cut(s) 38, 312
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 448
HinfI GANTC 4 cut(s) 262, 297, 361, 394
HpaII CCGG 2 cut(s) 83, 246
HphI GGTGA 5 cut(s) 35, 100, 110, 176, 442
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 3 cut(s) 29, 259, 266
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 2 cut(s) 137, 289
HpyAV CCTTC 3 cut(s) 223, 346, 470
HpyCH4III ACNGT 3 cut(s) 76, 98, 137
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 2 cut(s) 188, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 273, 336
HpyF3I CTNAG 1 cut(s) 348
HpySE526I ACGT 1 cut(s) 193
Hsp92I GRCGYC 1 cut(s) 312
HspAI GCGC 2 cut(s) 38, 312
KasI GGCGCC 1 cut(s) 311
KroI GCCGGC 1 cut(s) 82
KroNI GCCGGC 1 cut(s) 84
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 5 cut(s) 4, 25, 58, 166, 255
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 2 cut(s) 175, 367
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 2 cut(s) 88, 98
MalI GATC 5 cut(s) 6, 27, 60, 168, 257
MboI GATC 5 cut(s) 4, 25, 58, 166, 255
MflI RGATCY 1 cut(s) 255
MhlI GDGCHC 2 cut(s) 142, 154
MluCI AATT 1 cut(s) 403
Mly113I GGCGCC 1 cut(s) 312
MlyI GAGTC 1 cut(s) 388
MnlI CCTC 6 cut(s) 14, 113, 226, 262, 298, 320
MreI CGCCGGCG 1 cut(s) 82
MroNI GCCGGC 1 cut(s) 82
MseI TTAA 1 cut(s) 469
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 2 cut(s) 83, 246
MspR9I CCNGG 2 cut(s) 63, 128
MvaI CCWGG 2 cut(s) 63, 128
MvnI CGCG 2 cut(s) 40, 267
MwoI GCNNNNNNNGC 2 cut(s) 273, 336
NaeI GCCGGC 1 cut(s) 84
NarI GGCGCC 1 cut(s) 312
NdeII GATC 5 cut(s) 4, 25, 58, 166, 255
NgoMIV GCCGGC 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 2 cut(s) 88, 98
NruI TCGCGA 1 cut(s) 267
PdiI GCCGGC 1 cut(s) 84
PfeI GAWTC 3 cut(s) 262, 297, 361
PfoI TCCNGGA 1 cut(s) 61
PkrI GCNGC 5 cut(s) 316, 319, 332, 335, 338
PleI GAGTC 1 cut(s) 388
PluTI GGCGCC 1 cut(s) 315
PpsI GAGTC 1 cut(s) 388
Psp6I CCWGG 2 cut(s) 61, 126
PspEI GGTNACC 1 cut(s) 88
PspFI CCCAGC 1 cut(s) 276
PspGI CCWGG 2 cut(s) 61, 126
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 1 cut(s) 243
PstI CTGCAG 1 cut(s) 322
PsuI RGATCY 1 cut(s) 255
RruI TCGCGA 1 cut(s) 267
SaqAI TTAA 1 cut(s) 469
SatI GCNGC 5 cut(s) 315, 318, 331, 334, 337
Sau3AI GATC 5 cut(s) 4, 25, 58, 166, 255
Sau96I GGNCC 1 cut(s) 243
SchI GAGTC 1 cut(s) 388
ScrFI CCNGG 2 cut(s) 63, 128
SduI GDGCHC 2 cut(s) 142, 154
SetI ASST 9 cut(s) 25, 124, 196, 237, 357, 390, 423, 432, 452
SfaNI GCATC 2 cut(s) 175, 367
SfcI CTRYAG 2 cut(s) 290, 318
SfoI GGCGCC 1 cut(s) 313
SgrAI CRCCGGYG 1 cut(s) 82
Sse9I AATT 1 cut(s) 403
SsiI CCGC 8 cut(s) 40, 86, 105, 315, 330, 333, 336, 380
SspDI GGCGCC 1 cut(s) 311
StyD4I CCNGG 2 cut(s) 61, 126
TaaI ACNGT 3 cut(s) 76, 98, 137
TaiI ACGT 1 cut(s) 196
TaqI TCGA 4 cut(s) 19, 57, 260, 392
TasI AATT 1 cut(s) 403
TauI GCSGC 4 cut(s) 317, 333, 336, 339
TfiI GAWTC 3 cut(s) 262, 297, 361
Tru1I TTAA 1 cut(s) 469
Tru9I TTAA 1 cut(s) 469
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 2 cut(s) 88, 98
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 2 cut(s) 88, 98
TspDTI ATGAA 1 cut(s) 383
TspRI CASTG 1 cut(s) 346
XagI CCTNNNNNAGG 1 cut(s) 230
XapI RAATTY 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.