RLG00000001939

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001047
Physical Location & Seq
Forward (+)
23250222 .. 23251336
1115 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001939

Sequence Viewer

Length: 855 bp
ATGGTCTTAAGGACAAGGCCTTGGACAAAGTCCTTGGAAGAACACTTGAACATGATTCGGGACAAAGGCTCCCTTCACAAATATGGGGCAAAGCTGTACAAATCTATAGCAAAATTTGCCATCGTTGATGAAGCCCTAGAGCAGCTAATTAAGGTTCACTCTGAGCCGCCCACCCGCACTATTGTCATTGGGAACAATCAAGTAATGTCATACACTTATTCTTGCAATTCTTCTGCCGATGACCTCAAGAAACATGCAATGGAGGTTTTCAAGGATGCGACCAAAGATTGTGAGGACAAGGACATGAAAGAAAAATTTGACATGATTCAGGACTACAGTTCCCTTGAGAAATCTGCGTTTATGTTCTTCAATTCTATGGTGAATTCCGGCTTCCTTGACGAAGCTGAAGAGCTCCTTAAGAAGGCCATACTGCCTGTTGTGGCGGTCCACACCTATGTCATTGGGATTGGGGTTGCTGCCGGCAATACCAATGCTGCTCTCAAGGCCTTTCAGCACATGTCAGCCTCTGGGGTTGCTCCAAACTCCTATACTTATGCAGTTTTGATCAAGGGACTCACTGCTGACCTCAACTACTGTGGAGATGCCAAGAAGTTCTTGCTTGAGATGATGGACAAGGGTATGAGGCCCAATGCTGCTACCTACACTGCGGTGATAGAGGGTTTTGCAATGCAGGAGGACAAGGCAGCTGAGGAGGAGGGCAAACAGTTGGTGGAGTTGATGATGCATAAGGGGTTTGTGCCAAATGCAAAGGCTATGATGGAAGTTCTAAAGGGAAGGCCAAAACCTTTAATTAGAAGGGTTATCAACATTGCGCTTTCCAAGTTGAAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

285

Amino Acids

31.63

Weight (kDa)

8.52

Isoelectric Point (pI)

28.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 156 - 192 4.8e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 167, 175, 443, 668
AcsI RAATTY 3 cut(s) 113, 314, 382
AcuI CTGAAG 1 cut(s) 426
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 421
AflII CTTAAG 2 cut(s) 7, 416
AflIII ACRYGT 1 cut(s) 516
AgsI TTSAA 4 cut(s) 49, 271, 370, 847
AleI CACNNNNGTG 1 cut(s) 668
AluBI AGCT 5 cut(s) 94, 145, 404, 412, 707
AluI AGCT 5 cut(s) 94, 145, 404, 412, 707
Alw21I GWGCWC 1 cut(s) 414
AlwNI CAGNNNCTG 1 cut(s) 527
AoxI GGCC 5 cut(s) 17, 423, 504, 644, 797
ApeKI GCWGC 5 cut(s) 142, 476, 494, 653, 704
ApoI RAATTY 3 cut(s) 113, 314, 382
AspLEI GCGC 1 cut(s) 835
AspS9I GGNCC 2 cut(s) 445, 645
AsuHPI GGTGA 2 cut(s) 391, 682
AvaII GGWCC 1 cut(s) 445
BanII GRGCYC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 414
BbvCI CCTCAGC 1 cut(s) 708
BbvI GCAGC 5 cut(s) 154, 463, 481, 640, 716
BccI CCATC 3 cut(s) 128, 622, 772
BclI TGATCA 1 cut(s) 564
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 2 cut(s) 105, 334
BfrI CTTAAG 2 cut(s) 7, 416
BisI GCNGC 6 cut(s) 143, 167, 477, 495, 654, 705
BlsI GCNGC 6 cut(s) 144, 168, 478, 496, 655, 706
Bme18I GGWCC 1 cut(s) 445
BmgT120I GGNCC 2 cut(s) 445, 645
BmiI GGNNCC 1 cut(s) 70
BmsI GCATC 3 cut(s) 265, 592, 732
Bpu10I CCTNAGC 1 cut(s) 708
BpuEI CTTGAG 4 cut(s) 230, 365, 485, 641
BsaJI CCNNGG 2 cut(s) 20, 33
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse118I RCCGGY 1 cut(s) 479
Bse3DI GCAATG 3 cut(s) 264, 693, 828
BseDI CCNNGG 2 cut(s) 20, 33
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMI GCAATG 3 cut(s) 264, 693, 828
BseMII CTCAG 2 cut(s) 153, 699
BseRI GAGGAG 2 cut(s) 725, 728
BseXI GCAGC 5 cut(s) 154, 463, 481, 640, 716
BshFI GGCC 5 cut(s) 19, 425, 506, 646, 799
BsiHKAI GWGCWC 1 cut(s) 414
BsiSI CCGG 2 cut(s) 387, 480
BslFI GGGAC 2 cut(s) 74, 585
BslI CCNNNNNNNGG 1 cut(s) 421
BsmFI GGGAC 2 cut(s) 74, 585
BsnI GGCC 5 cut(s) 19, 425, 506, 646, 799
Bsp1286I GDGCHC 1 cut(s) 414
Bsp1407I TGTACA 1 cut(s) 96
Bsp143I GATC 1 cut(s) 564
BspACI CCGC 4 cut(s) 167, 175, 443, 668
BspANI GGCC 5 cut(s) 19, 425, 506, 646, 799
BspCNI CTCAG 2 cut(s) 154, 700
BspLI GGNNCC 1 cut(s) 70
BspQI GCTCTTC 1 cut(s) 402
BspTI CTTAAG 2 cut(s) 7, 416
BsrDI GCAATG 3 cut(s) 264, 693, 828
BsrFI RCCGGY 1 cut(s) 479
BsrGI TGTACA 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 479
BssECI CCNNGG 2 cut(s) 20, 33
BssMI GATC 1 cut(s) 564
BssT1I CCWWGG 2 cut(s) 20, 33
Bst4CI ACNGT 3 cut(s) 338, 596, 726
Bst6I CTCTTC 1 cut(s) 402
BstAFI CTTAAG 2 cut(s) 7, 416
BstAPI GCANNNNNTGC 1 cut(s) 116
BstAUI TGTACA 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 2 cut(s) 162, 708
BstENI CCTNNNNNAGG 1 cut(s) 419
BstF5I GGATG 1 cut(s) 280
BstHHI GCGC 1 cut(s) 835
BstKTI GATC 1 cut(s) 567
BstMBI GATC 1 cut(s) 564
BstMWI GCNNNNNNNGC 2 cut(s) 116, 503
BstNSI RCATGY 2 cut(s) 257, 520
BstSFI CTRYAG 2 cut(s) 105, 334
BstV1I GCAGC 5 cut(s) 154, 463, 481, 640, 716
BsuRI GGCC 5 cut(s) 19, 425, 506, 646, 799
BtsCI GGATG 1 cut(s) 280
BtsI GCAGTG 2 cut(s) 576, 663
BtsIMutI CAGTG 2 cut(s) 576, 663
Cac8I GCNNGC 1 cut(s) 481
CaiI CAGNNNCTG 1 cut(s) 527
CfoI GCGC 1 cut(s) 835
Cfr10I RCCGGY 1 cut(s) 479
Cfr13I GGNCC 2 cut(s) 445, 645
Csp6I GTAC 1 cut(s) 97
CspCI CAANNNNNGTGG 2 cut(s) 577, 612
CviAII CATG 5 cut(s) 52, 254, 304, 322, 517
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 2 cut(s) 162, 708
DpnI GATC 1 cut(s) 566
DpnII GATC 1 cut(s) 564
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Ecl136II GAGCTC 1 cut(s) 412
Eco130I CCWWGG 2 cut(s) 20, 33
Eco147I AGGCCT 2 cut(s) 19, 506
Eco24I GRGCYC 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 445
Eco53kI GAGCTC 1 cut(s) 412
Eco57I CTGAAG 1 cut(s) 426
EcoICRI GAGCTC 1 cut(s) 412
EcoNI CCTNNNNNAGG 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 382
EcoT14I CCWWGG 2 cut(s) 20, 33
EcoT22I ATGCAT 1 cut(s) 747
EcoT38I GRGCYC 1 cut(s) 414
ErhI CCWWGG 2 cut(s) 20, 33
FaeI CATG 5 cut(s) 55, 257, 307, 325, 520
FalI AAGNNNNNCTT 6 cut(s) 57, 89, 399, 431, 599, 631
FaqI GGGAC 2 cut(s) 74, 585
FatI CATG 5 cut(s) 51, 253, 303, 321, 516
FauI CCCGC 1 cut(s) 182
FbaI TGATCA 1 cut(s) 564
Fnu4HI GCNGC 6 cut(s) 143, 167, 477, 495, 654, 705
FokI GGATG 1 cut(s) 287
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 6 cut(s) 143, 167, 477, 495, 654, 705
FspBI CTAG 1 cut(s) 137
GlaI GCGC 1 cut(s) 834
GluI GCNGC 6 cut(s) 143, 167, 477, 495, 654, 705
HaeIII GGCC 5 cut(s) 19, 425, 506, 646, 799
HapII CCGG 2 cut(s) 387, 480
HhaI GCGC 1 cut(s) 835
Hin1II CATG 5 cut(s) 55, 257, 307, 325, 520
Hin6I GCGC 1 cut(s) 833
HinP1I GCGC 1 cut(s) 833
HinfI GANTC 3 cut(s) 55, 325, 573
HpaII CCGG 2 cut(s) 387, 480
HphI GGTGA 2 cut(s) 391, 682
Hpy166II GTNNAC 2 cut(s) 157, 448
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 3 cut(s) 59, 247, 329
Hpy8I GTNNAC 2 cut(s) 157, 448
HpyAV CCTTC 5 cut(s) 83, 415, 789, 810, 841
HpyCH4III ACNGT 3 cut(s) 338, 596, 726
HpyCH4V TGCA 7 cut(s) 225, 257, 557, 686, 691, 745, 767
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 503
HpyF3I CTNAG 2 cut(s) 162, 708
Hsp92II CATG 5 cut(s) 55, 257, 307, 325, 520
HspAI GCGC 1 cut(s) 833
KroI GCCGGC 1 cut(s) 479
KroNI GCCGGC 1 cut(s) 481
Ksp22I TGATCA 1 cut(s) 564
Kzo9I GATC 1 cut(s) 564
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 3 cut(s) 74, 417, 541
LpnPI CCDG 6 cut(s) 314, 400, 447, 493, 513, 677
Lsp1109I GCAGC 5 cut(s) 154, 463, 481, 640, 716
LweI GCATC 3 cut(s) 265, 592, 732
MaeI CTAG 1 cut(s) 137
MalI GATC 1 cut(s) 566
MboI GATC 1 cut(s) 564
MboII GAAGA 4 cut(s) 50, 222, 358, 419
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 7 cut(s) 113, 147, 226, 314, 370, 382, 810
MlyI GAGTC 1 cut(s) 567
Mph1103I ATGCAT 1 cut(s) 747
MroNI GCCGGC 1 cut(s) 479
MseI TTAA 4 cut(s) 8, 150, 417, 809
MslI CAYNNNNRTG 3 cut(s) 81, 453, 668
MspA1I CMGCKG 1 cut(s) 707
MspCI CTTAAG 2 cut(s) 7, 416
MspI CCGG 2 cut(s) 387, 480
MwoI GCNNNNNNNGC 2 cut(s) 116, 503
NaeI GCCGGC 1 cut(s) 481
NdeII GATC 1 cut(s) 564
NgoMIV GCCGGC 1 cut(s) 479
NlaIII CATG 5 cut(s) 55, 257, 307, 325, 520
NlaIV GGNNCC 1 cut(s) 70
NsiI ATGCAT 1 cut(s) 747
NspI RCATGY 2 cut(s) 257, 520
OliI CACNNNNGTG 1 cut(s) 668
PceI AGGCCT 2 cut(s) 19, 506
PciI ACATGT 1 cut(s) 516
PciSI GCTCTTC 1 cut(s) 402
PdiI GCCGGC 1 cut(s) 481
PfeI GAWTC 2 cut(s) 55, 325
PflFI GACNNNGTC 1 cut(s) 28
PkrI GCNGC 6 cut(s) 144, 168, 478, 496, 655, 706
PleI GAGTC 1 cut(s) 567
PpsI GAGTC 1 cut(s) 567
PscI ACATGT 1 cut(s) 516
Psp124BI GAGCTC 1 cut(s) 414
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 2 cut(s) 445, 645
PstNI CAGNNNCTG 1 cut(s) 527
PsyI GACNNNGTC 1 cut(s) 28
PvuII CAGCTG 1 cut(s) 707
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 3 cut(s) 81, 453, 668
SacI GAGCTC 1 cut(s) 414
SapI GCTCTTC 1 cut(s) 402
SaqAI TTAA 4 cut(s) 8, 150, 417, 809
SatI GCNGC 6 cut(s) 143, 167, 477, 495, 654, 705
Sau3AI GATC 1 cut(s) 564
Sau96I GGNCC 2 cut(s) 445, 645
SchI GAGTC 1 cut(s) 567
SduI GDGCHC 1 cut(s) 414
SfaNI GCATC 3 cut(s) 265, 592, 732
SfcI CTRYAG 2 cut(s) 105, 334
SinI GGWCC 1 cut(s) 445
SmiMI CAYNNNNRTG 3 cut(s) 81, 453, 668
SmlI CTYRAG 6 cut(s) 7, 245, 344, 416, 500, 620
SmoI CTYRAG 6 cut(s) 7, 245, 344, 416, 500, 620
Sse9I AATT 7 cut(s) 113, 147, 226, 314, 370, 382, 810
SseBI AGGCCT 2 cut(s) 19, 506
SsiI CCGC 4 cut(s) 167, 175, 443, 668
SspMI CTAG 1 cut(s) 137
SstI GAGCTC 1 cut(s) 414
StuI AGGCCT 2 cut(s) 19, 506
StyI CCWWGG 2 cut(s) 20, 33
TaaI ACNGT 3 cut(s) 338, 596, 726
TasI AATT 7 cut(s) 113, 147, 226, 314, 370, 382, 810
TatI WGTACW 1 cut(s) 96
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 2 cut(s) 55, 325
Tru1I TTAA 4 cut(s) 8, 150, 417, 809
Tru9I TTAA 4 cut(s) 8, 150, 417, 809
TscAI CASTG 2 cut(s) 583, 670
TseI GCWGC 5 cut(s) 142, 476, 494, 653, 704
TspDTI ATGAA 2 cut(s) 144, 320
TspRI CASTG 2 cut(s) 583, 670
Tth111I GACNNNGTC 1 cut(s) 28
Vha464I CTTAAG 2 cut(s) 7, 416
VpaK11BI GGWCC 1 cut(s) 445
XagI CCTNNNNNAGG 1 cut(s) 419
XapI RAATTY 3 cut(s) 113, 314, 382
XceI RCATGY 2 cut(s) 257, 520
XspI CTAG 1 cut(s) 137
Zsp2I ATGCAT 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.