Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001047

Physical Location & Seq

Genomic Coordinates Reverse (-)

29391011 .. 29392286

Gene Structure 1276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013301

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGATGATGATCAGCCCGTCTATTGTTACCCAGTTGCTGCTTATTCAATGGCATAGGGATCATGCTCTTGATAGAGAAAGATCAGTTAGAGACGATGCTACGACAGATCCTGTGTTGTTGCCGAGAAAGCATACTTTGAATTCTATGAGCAATGGCTGCGGTGCAGAAGTTGTGGGTTTGGATCTAAATAAGTTCTTTGGAAAATCGATCCCGGTGGTGATTATGGGGGAGGGGAGCGGTGGCTATGGGGATGGAGGTTTCCAGGGCGACGGTGTTCCTACTTGGGCTCTTTGGGCTGGTGATCGATATGGGGATGGGGATGCTCAACGTGGTGGCTATTTAGGCTATGCTGGTGATGGCCTGAAGGAGGTCAGTAAGGGCGGCAACGTCTTTTCCGGCAACGGCGACATGCAACTTGGTAGCAGCTATGTTGTGGAGCAGCTAGTTGCCAGGGTTTCAGAAAATTTGGGTTGTTGGGCTCAAGTATTGGGCTTAGTCTGGACTGGGTTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

18.26

Weight (kDa)

5.05

Isoelectric Point (pI)

17.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001047)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c11g0499391 RchiOBHm_Chr3g0447361 RchiOBHm_Chr7g0218341 RchiOBHm_Chr7g0226151 RchiOBHm_Chr7g0236171 RchiOBHm_Chr7g0236221
rosa_laevigata	RLG00000001100 RLG00000001939 RLG00000012810 RLG00000013102 RLG00000013301 RLG00000020513 RLG00000030019 RLG00000037087
rosa_multiflora	Rmu_sc0000570.1_g000004 Rmu_sc0010974.1_g000003 Rmu_sc0014688.1_g000003 Rmu_sc0040332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000490 Rroxscaffold_3G00225330 Rroxscaffold_3G00227720 Rroxscaffold_6G00410030 Rroxscaffold_7G00159290
rosa_rugosa	Rorug03G0036000 Rorug05G0301600 Rorug07G0294600 Rorug07G0294600 Rorug07G0294600 Rorug07G0295400 Rorug07G0295400
rosa_samantha	Rh1AG363600 Rh1BG122700 Rh1CG048900 Rh1CG366200 Rh1DG053200 Rh1DG383900 Rh2BG407500 Rh2CG090200 Rh2CG606900 Rh2DG420300 Rh2DG655300 Rh3DG114600 Rh4AG182100 Rh4CG412200 Rh4CG453300 Rh4DG240200 Rh4DG240300 Rh5AG138000 Rh5BG568100 Rh5DG205500 Rh6AG006600 Rh6AG084300 Rh6AG150400 Rh6BG073500 Rh6BG279100 Rh6CG073700 Rh6DG070600 Rh7AG101500 Rh7DG439100
rosa_wichuraiana	Rw2G020930 Rw7G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	237
AciI	CCGC	3 cut(s)	159, 237, 381
AclWI	GGATC	4 cut(s)	66, 101, 189, 202
AcsI	RAATTY	2 cut(s)	139, 463
AcuI	CTGAAG	1 cut(s)	383
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	47, 139
AjnI	CCWGG	2 cut(s)	261, 449
AluBI	AGCT	2 cut(s)	426, 442
AluI	AGCT	2 cut(s)	426, 442
Alw26I	GTCTC	1 cut(s)	84
AlwI	GGATC	4 cut(s)	66, 101, 189, 202
AlwNI	CAGNNNCTG	2 cut(s)	37, 110
AoxI	GGCC	1 cut(s)	358
ApeKI	GCWGC	4 cut(s)	37, 156, 423, 439
ApoI	RAATTY	2 cut(s)	139, 463
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	3 cut(s)	229, 311, 365
BanII	GRGCYC	2 cut(s)	289, 481
BbvI	GCAGC	4 cut(s)	24, 143, 435, 451
BccI	CCATC	3 cut(s)	245, 308, 350
BceAI	ACGGC	1 cut(s)	418
BciT130I	CCWGG	2 cut(s)	263, 451
BclI	TGATCA	1 cut(s)	9
BcnI	CCSGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	1 cut(s)	443
BisI	GCNGC	5 cut(s)	38, 157, 382, 424, 440
BlsI	GCNGC	5 cut(s)	39, 158, 383, 425, 441
Bme1390I	CCNGG	3 cut(s)	212, 263, 451
BmrFI	CCNGG	3 cut(s)	212, 263, 451
BmrI	ACTGGG	2 cut(s)	25, 513
BmsI	GCATC	2 cut(s)	85, 310
BmuI	ACTGGG	2 cut(s)	25, 513
BpuEI	CTTGAG	1 cut(s)	465
BpuMI	CCSGG	1 cut(s)	212
Bsa29I	ATCGAT	2 cut(s)	206, 304
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	262, 450
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	2 cut(s)	31, 508
Bse3DI	GCAATG	1 cut(s)	157
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	2 cut(s)	263, 451
BseCI	ATCGAT	2 cut(s)	206, 304
BseDI	CCNNGG	2 cut(s)	262, 450
BseGI	GGATG	3 cut(s)	256, 319, 325
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMI	GCAATG	1 cut(s)	157
BseNI	ACTGG	2 cut(s)	31, 508
BseXI	GCAGC	4 cut(s)	24, 143, 435, 451
BsgI	GTGCAG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	360
BshVI	ATCGAT	2 cut(s)	206, 304
BsiSI	CCGG	2 cut(s)	212, 396
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	84
BsmBI	CGTCTC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	360
Bsp1286I	GDGCHC	2 cut(s)	289, 481
Bsp143I	GATC	7 cut(s)	9, 58, 80, 106, 181, 207, 301
BspACI	CCGC	3 cut(s)	159, 237, 381
BspANI	GGCC	1 cut(s)	360
BspDI	ATCGAT	2 cut(s)	206, 304
BspPI	GGATC	4 cut(s)	66, 101, 189, 202
BsrBI	CCGCTC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	157
BsrI	ACTGG	2 cut(s)	31, 508
BssECI	CCNNGG	2 cut(s)	262, 450
BssMI	GATC	7 cut(s)	9, 58, 80, 106, 181, 207, 301
Bst2UI	CCWGG	2 cut(s)	263, 451
Bst4CI	ACNGT	1 cut(s)	272
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	493
BstENI	CCTNNNNNAGG	1 cut(s)	365
BstF5I	GGATG	3 cut(s)	256, 319, 325
BstKTI	GATC	7 cut(s)	12, 61, 83, 109, 184, 210, 304
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	7 cut(s)	9, 58, 80, 106, 181, 207, 301
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 156, 293, 342
BstNI	CCWGG	2 cut(s)	263, 451
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	3 cut(s)	210, 261, 449
BstV1I	GCAGC	4 cut(s)	24, 143, 435, 451
BstX2I	RGATCY	2 cut(s)	106, 181
BstYI	RGATCY	2 cut(s)	106, 181
Bsu15I	ATCGAT	2 cut(s)	206, 304
BsuRI	GGCC	1 cut(s)	360
BsuTUI	ATCGAT	2 cut(s)	206, 304
BtsCI	GGATG	3 cut(s)	256, 319, 325
CaiI	CAGNNNCTG	2 cut(s)	37, 110
ClaI	ATCGAT	2 cut(s)	206, 304
CviAII	CATG	2 cut(s)	62, 409
DdeI	CTNAG	1 cut(s)	493
DpnI	GATC	7 cut(s)	11, 60, 82, 108, 183, 209, 303
DpnII	GATC	7 cut(s)	9, 58, 80, 106, 181, 207, 301
Eco24I	GRGCYC	2 cut(s)	289, 481
Eco57I	CTGAAG	1 cut(s)	383
EcoNI	CCTNNNNNAGG	1 cut(s)	365
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	261, 449
EcoT38I	GRGCYC	2 cut(s)	289, 481
Esp3I	CGTCTC	1 cut(s)	84
FaeI	CATG	2 cut(s)	65, 412
FatI	CATG	2 cut(s)	61, 408
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	5 cut(s)	38, 157, 382, 424, 440
FokI	GGATG	3 cut(s)	263, 326, 332
FriOI	GRGCYC	2 cut(s)	289, 481
Fsp4HI	GCNGC	5 cut(s)	38, 157, 382, 424, 440
FspBI	CTAG	1 cut(s)	443
GluI	GCNGC	5 cut(s)	38, 157, 382, 424, 440
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	2 cut(s)	212, 396
Hin1II	CATG	2 cut(s)	65, 412
HpaII	CCGG	2 cut(s)	212, 396
HphI	GGTGA	3 cut(s)	229, 311, 365
Hpy188I	TCNGA	1 cut(s)	460
Hpy188III	TCNNGA	2 cut(s)	68, 499
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	2 cut(s)	328, 387
HpyCH4V	TGCA	3 cut(s)	164, 412, 511
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 156, 293, 342
HpyF3I	CTNAG	1 cut(s)	493
HpySE526I	ACGT	2 cut(s)	328, 387
Hsp92II	CATG	2 cut(s)	65, 412
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	7 cut(s)	9, 58, 80, 106, 181, 207, 301
LmnI	GCTCC	2 cut(s)	234, 436
Lsp1109I	GCAGC	4 cut(s)	24, 143, 435, 451
LweI	GCATC	2 cut(s)	85, 310
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	2 cut(s)	328, 387
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	7 cut(s)	11, 60, 82, 108, 183, 209, 303
MbiI	CCGCTC	1 cut(s)	237
MboI	GATC	7 cut(s)	9, 58, 80, 106, 181, 207, 301
MflI	RGATCY	2 cut(s)	106, 181
MhlI	GDGCHC	2 cut(s)	289, 481
MluCI	AATT	2 cut(s)	139, 463
MnlI	CCTC	3 cut(s)	223, 248, 361
MspI	CCGG	2 cut(s)	212, 396
MspR9I	CCNGG	3 cut(s)	212, 263, 451
MvaI	CCWGG	2 cut(s)	263, 451
MwoI	GCNNNNNNNGC	4 cut(s)	127, 156, 293, 342
NciI	CCSGG	1 cut(s)	212
NdeII	GATC	7 cut(s)	9, 58, 80, 106, 181, 207, 301
NlaIII	CATG	2 cut(s)	65, 412
NmeAIII	GCCGAG	1 cut(s)	147
NspI	RCATGY	1 cut(s)	412
PkrI	GCNGC	5 cut(s)	39, 158, 383, 425, 441
Psp6I	CCWGG	2 cut(s)	261, 449
PspGI	CCWGG	2 cut(s)	261, 449
PstNI	CAGNNNCTG	2 cut(s)	37, 110
PsuI	RGATCY	2 cut(s)	106, 181
SatI	GCNGC	5 cut(s)	38, 157, 382, 424, 440
Sau3AI	GATC	7 cut(s)	9, 58, 80, 106, 181, 207, 301
ScrFI	CCNGG	3 cut(s)	212, 263, 451
SduI	GDGCHC	2 cut(s)	289, 481
SetI	ASST	6 cut(s)	259, 331, 372, 390, 428, 444
SfaNI	GCATC	2 cut(s)	85, 310
SmlI	CTYRAG	1 cut(s)	480
SmoI	CTYRAG	1 cut(s)	480
Sse9I	AATT	2 cut(s)	139, 463
SsiI	CCGC	3 cut(s)	159, 237, 381
SspMI	CTAG	1 cut(s)	443
StyD4I	CCNGG	3 cut(s)	210, 261, 449
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	2 cut(s)	331, 390
TaqI	TCGA	2 cut(s)	206, 304
TasI	AATT	2 cut(s)	139, 463
TauI	GCSGC	1 cut(s)	384
TseI	GCWGC	4 cut(s)	37, 156, 423, 439
XagI	CCTNNNNNAGG	1 cut(s)	365
XapI	RAATTY	2 cut(s)	139, 463
XceI	RCATGY	1 cut(s)	412
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.