Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001047

Physical Location & Seq

Genomic Coordinates Reverse (-)

59802514 .. 59803091

Gene Structure 578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG363600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCTGATCGGAGGCCGAACTCTAACGGCGTGGTTCTGGTTTGGCCTAAGGGATTGTACAATCATATCGCTGTGGTTGGCCCTGGTGGTTCGCTGCAGCGTCGTGGTGTTGCCGGAGTGGGGTTGGCCGGACCAGTTCAAGGGATCGATCAAAGCTTGGAGGATCTTCAGGTTGATAGTGATGATGGATCTGCTCTTGATTCGTCGATTGATGGTGGGGGTAGCGACCGACGCGGTGGCCAGATTGCTTCTATTGGCGGTGGGGGTTGTCTCTGGTTCATGAAGGCGGAGTATCTGGTCTTTGATGGTGGAGGTGGTACTTTGTCTAGAGGCGGTGACGGTTTCTGGGTGGAATCTGATCCCCTTGGGGTTGTGACCCACGGCGGTAGAGGCGACAGCTTCCACGGCTGTGATGGAGTGCGTGCGGTGCCCTTAGCAATTTCGCCCTACTGGGCCAGCTGGGATGACGGCGACGGCAAAATTGTTGGGGAGGCTAGGGTTTCTCCTAAACTGGCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

17.68

Weight (kDa)

4.76

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001047)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c11g0499391 RchiOBHm_Chr3g0447361 RchiOBHm_Chr7g0218341 RchiOBHm_Chr7g0226151 RchiOBHm_Chr7g0236171 RchiOBHm_Chr7g0236221
rosa_laevigata	RLG00000001100 RLG00000001939 RLG00000012810 RLG00000013102 RLG00000013301 RLG00000020513 RLG00000030019 RLG00000037087
rosa_multiflora	Rmu_sc0000570.1_g000004 Rmu_sc0010974.1_g000003 Rmu_sc0014688.1_g000003 Rmu_sc0040332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000490 Rroxscaffold_3G00225330 Rroxscaffold_3G00227720 Rroxscaffold_6G00410030 Rroxscaffold_7G00159290
rosa_rugosa	Rorug03G0036000 Rorug05G0301600 Rorug07G0294600 Rorug07G0294600 Rorug07G0294600 Rorug07G0295400 Rorug07G0295400
rosa_samantha	Rh1AG363600 Rh1BG122700 Rh1CG048900 Rh1CG366200 Rh1DG053200 Rh1DG383900 Rh2BG407500 Rh2CG090200 Rh2CG606900 Rh2DG420300 Rh2DG655300 Rh3DG114600 Rh4AG182100 Rh4CG412200 Rh4CG453300 Rh4DG240200 Rh4DG240300 Rh5AG138000 Rh5BG568100 Rh5DG205500 Rh6AG006600 Rh6AG084300 Rh6AG150400 Rh6BG073500 Rh6BG279100 Rh6CG073700 Rh6DG070600 Rh7AG101500 Rh7DG439100
rosa_wichuraiana	Rw2G020930 Rw7G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	427
AccII	CGCG	1 cut(s)	234
AciI	CCGC	6 cut(s)	234, 258, 287, 333, 384, 425
AclWI	GGATC	4 cut(s)	152, 171, 196, 353
AcoI	YGGCCR	2 cut(s)	126, 238
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	2 cut(s)	59, 319
AfiI	CCNNNNNNNGG	2 cut(s)	120, 140
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	82
AleI	CACNNNNGTG	1 cut(s)	408
AluBI	AGCT	3 cut(s)	156, 399, 459
AluI	AGCT	3 cut(s)	156, 399, 459
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	4 cut(s)	152, 171, 196, 353
AoxI	GGCC	6 cut(s)	14, 44, 79, 126, 238, 453
ApeKI	GCWGC	2 cut(s)	94, 97
AspS9I	GGNCC	3 cut(s)	80, 131, 453
AsuHPI	GGTGA	1 cut(s)	347
AvaII	GGWCC	1 cut(s)	131
AxyI	CCTNAGG	1 cut(s)	48
BaeGI	GKGCMC	1 cut(s)	432
BalI	TGGCCA	1 cut(s)	240
BanI	GGYRCC	1 cut(s)	427
BbvI	GCAGC	2 cut(s)	81, 109
BccI	CCATC	4 cut(s)	179, 206, 299, 407
BceAI	ACGGC	5 cut(s)	43, 397, 421, 484, 490
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	2 cut(s)	327, 495
BfmI	CTRYAG	1 cut(s)	95
BisI	GCNGC	2 cut(s)	95, 98
BlsI	GCNGC	2 cut(s)	96, 99
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	3 cut(s)	80, 131, 453
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	1 cut(s)	84
BmrI	ACTGGG	1 cut(s)	460
BmuI	ACTGGG	1 cut(s)	460
Bpu10I	CCTNAGC	1 cut(s)	433
Bsa29I	ATCGAT	1 cut(s)	147
BsaJI	CCNNGG	4 cut(s)	82, 364, 379, 403
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 140
Bse1I	ACTGG	3 cut(s)	134, 455, 516
Bse21I	CCTNAGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	84
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	4 cut(s)	82, 364, 379, 403
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	2 cut(s)	120, 140
BseNI	ACTGG	3 cut(s)	134, 455, 516
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	2 cut(s)	81, 109
BseYI	CCCAGC	1 cut(s)	459
Bsh1236I	CGCG	1 cut(s)	234
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	6 cut(s)	16, 46, 81, 128, 240, 455
BshNI	GGYRCC	1 cut(s)	427
BshVI	ATCGAT	1 cut(s)	147
BsiEI	CGRYCG	1 cut(s)	229
BsiSI	CCGG	2 cut(s)	114, 129
BslI	CCNNNNNNNGG	2 cut(s)	120, 140
BsmAI	GTCTC	1 cut(s)	275
BsnI	GGCC	6 cut(s)	16, 46, 81, 128, 240, 455
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	6 cut(s)	7, 144, 148, 163, 188, 358
BspACI	CCGC	6 cut(s)	234, 258, 287, 333, 384, 425
BspANI	GGCC	6 cut(s)	16, 46, 81, 128, 240, 455
BspDI	ATCGAT	1 cut(s)	147
BspFNI	CGCG	1 cut(s)	234
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	429
BspMAI	CTGCAG	1 cut(s)	99
BspPI	GGATC	4 cut(s)	152, 171, 196, 353
BspT107I	GGYRCC	1 cut(s)	427
BsrGI	TGTACA	1 cut(s)	57
BsrI	ACTGG	3 cut(s)	134, 455, 516
BssECI	CCNNGG	4 cut(s)	82, 364, 379, 403
BssMI	GATC	6 cut(s)	7, 144, 148, 163, 188, 358
BssT1I	CCWWGG	1 cut(s)	364
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	341
BstAUI	TGTACA	1 cut(s)	57
BstC8I	GCNNGC	3 cut(s)	423, 457, 517
BstDEI	CTNAG	2 cut(s)	48, 433
BstDSI	CCRYGG	2 cut(s)	379, 403
BstF5I	GGATG	1 cut(s)	469
BstFNI	CGCG	1 cut(s)	234
BstKTI	GATC	6 cut(s)	10, 147, 151, 166, 191, 361
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	6 cut(s)	7, 144, 148, 163, 188, 358
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	4 cut(s)	231, 390, 405, 427
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	95
BstSLI	GKGCMC	1 cut(s)	432
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	81, 109
BstX2I	RGATCY	2 cut(s)	163, 188
BstYI	RGATCY	2 cut(s)	163, 188
Bsu15I	ATCGAT	1 cut(s)	147
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	6 cut(s)	16, 46, 81, 128, 240, 455
BsuTUI	ATCGAT	1 cut(s)	147
BtgI	CCRYGG	2 cut(s)	379, 403
BtsCI	GGATG	1 cut(s)	469
Cac8I	GCNNGC	3 cut(s)	423, 457, 517
CciI	TCATGA	1 cut(s)	279
Cfr13I	GGNCC	3 cut(s)	80, 131, 453
ClaI	ATCGAT	1 cut(s)	147
CseI	GACGC	2 cut(s)	89, 240
Csp6I	GTAC	2 cut(s)	58, 318
CviAII	CATG	1 cut(s)	280
CviQI	GTAC	2 cut(s)	58, 318
DdeI	CTNAG	2 cut(s)	48, 433
DpnI	GATC	6 cut(s)	9, 146, 150, 165, 190, 360
DpnII	GATC	6 cut(s)	7, 144, 148, 163, 188, 358
EaeI	YGGCCR	2 cut(s)	126, 238
EciI	GGCGGA	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	152
Eco81I	CCTNAGG	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	364
FaeI	CATG	1 cut(s)	283
FaiI	YATR	2 cut(s)	66, 281
FatI	CATG	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	95, 98
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	2 cut(s)	95, 98
FspBI	CTAG	2 cut(s)	327, 495
GluI	GCNGC	2 cut(s)	95, 98
GsaI	CCCAGC	1 cut(s)	463
HaeIII	GGCC	6 cut(s)	16, 46, 81, 128, 240, 455
HapII	CCGG	2 cut(s)	114, 129
HgaI	GACGC	2 cut(s)	89, 240
Hin1II	CATG	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	2 cut(s)	200, 353
HpaII	CCGG	2 cut(s)	114, 129
HphI	GGTGA	1 cut(s)	347
Hpy188I	TCNGA	2 cut(s)	12, 358
Hpy188III	TCNNGA	3 cut(s)	197, 280, 327
Hpy99I	CGWCG	4 cut(s)	105, 208, 234, 476
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4V	TGCA	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	4 cut(s)	231, 390, 405, 427
HpyF3I	CTNAG	2 cut(s)	48, 433
Hsp92II	CATG	1 cut(s)	283
Kzo9I	GATC	6 cut(s)	7, 144, 148, 163, 188, 358
Lsp1109I	GCAGC	2 cut(s)	81, 109
MaeI	CTAG	2 cut(s)	327, 495
MaeIII	GTNAC	2 cut(s)	335, 373
MalI	GATC	6 cut(s)	9, 146, 150, 165, 190, 360
MboI	GATC	6 cut(s)	7, 144, 148, 163, 188, 358
MboII	GAAGA	1 cut(s)	158
MflI	RGATCY	2 cut(s)	163, 188
MhlI	GDGCHC	1 cut(s)	432
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	2 cut(s)	438, 480
MluNI	TGGCCA	1 cut(s)	240
MnlI	CCTC	6 cut(s)	6, 154, 305, 323, 383, 484
Mox20I	TGGCCA	1 cut(s)	240
MscI	TGGCCA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	408
Msp20I	TGGCCA	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	459
MspI	CCGG	2 cut(s)	114, 129
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	4 cut(s)	231, 390, 405, 427
NdeII	GATC	6 cut(s)	7, 144, 148, 163, 188, 358
NlaIII	CATG	1 cut(s)	283
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	2 cut(s)	335, 373
OliI	CACNNNNGTG	1 cut(s)	408
PagI	TCATGA	1 cut(s)	279
PfeI	GAWTC	2 cut(s)	200, 353
PkrI	GCNGC	2 cut(s)	96, 99
Psp6I	CCWGG	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	3 cut(s)	80, 131, 453
PstI	CTGCAG	1 cut(s)	99
PsuI	RGATCY	2 cut(s)	163, 188
PvuII	CAGCTG	1 cut(s)	459
RsaI	GTAC	2 cut(s)	59, 319
RsaNI	GTAC	2 cut(s)	58, 318
RseI	CAYNNNNRTG	1 cut(s)	408
SatI	GCNGC	2 cut(s)	95, 98
Sau3AI	GATC	6 cut(s)	7, 144, 148, 163, 188, 358
Sau96I	GGNCC	3 cut(s)	80, 131, 453
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	432
SetI	ASST	5 cut(s)	158, 174, 316, 401, 461
SfcI	CTRYAG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	408
Sse9I	AATT	2 cut(s)	438, 480
SsiI	CCGC	6 cut(s)	234, 258, 287, 333, 384, 425
SspMI	CTAG	2 cut(s)	327, 495
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	1 cut(s)	341
TaqI	TCGA	2 cut(s)	147, 206
TaqII	GACCGA	1 cut(s)	243
TasI	AATT	2 cut(s)	438, 480
TatI	WGTACW	1 cut(s)	57
TfiI	GAWTC	2 cut(s)	200, 353
TseFI	GTSAC	2 cut(s)	335, 373
TseI	GCWGC	2 cut(s)	94, 97
Tsp45I	GTSAC	2 cut(s)	335, 373
TspDTI	ATGAA	2 cut(s)	268, 296
VpaK11BI	GGWCC	1 cut(s)	131
XbaI	TCTAGA	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	410
XspI	CTAG	2 cut(s)	327, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.