Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001047

Physical Location & Seq

Genomic Coordinates Forward (+)

56753909 .. 56756446

Gene Structure 2538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G037370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCTTTGAAGTTGGTTCGAGGTGATCAGGAATGGGCGCGAACTTGGGTGTCCTTTGATCCTGGAGATGGTACAGTATCGTCGGCGGTGAACCACGGTGACGGCGGCCATGGGGATGGCGGTTTTCAGGGCGATGGAGCTCCTCCTTGGGCTCTATGGGCTGGTGATCGTTCTGGGGATGGGGCTGCTCAATGTGGTGGCCTTTTTGGCTATGCTGGTGATGGCCTGAAGGTGGGAACAATGGCGAGTTCTAGTTCCCCCAATTCTTCTGTCCGTGTCATCAAGAAATATGCAGTGAAGGGTCTTAAGGACAAGGCCTTGAAAGAACACTTGAACATGATTCGGGACAAAGACTCCCTTCACAAATATGGGGCAAAGCTGTACAAATCTATAGCAAAATTCGCCATCTTTGATGAAGCCCTAGAGCAGCTAATTAAGGTTCACTCTGAGCCGCCCACCCGCACTATGGTCATTGGGAACAATCAAACATATGCTGCTGTTCTCTTTGATTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

18.4

Weight (kDa)

6.97

Isoelectric Point (pI)

22.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001047)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c11g0499391 RchiOBHm_Chr3g0447361 RchiOBHm_Chr7g0218341 RchiOBHm_Chr7g0226151 RchiOBHm_Chr7g0236171 RchiOBHm_Chr7g0236221
rosa_laevigata	RLG00000001100 RLG00000001939 RLG00000012810 RLG00000013102 RLG00000013301 RLG00000020513 RLG00000030019 RLG00000037087
rosa_multiflora	Rmu_sc0000570.1_g000004 Rmu_sc0010974.1_g000003 Rmu_sc0014688.1_g000003 Rmu_sc0040332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000490 Rroxscaffold_3G00225330 Rroxscaffold_3G00227720 Rroxscaffold_6G00410030 Rroxscaffold_7G00159290
rosa_rugosa	Rorug03G0036000 Rorug05G0301600 Rorug07G0294600 Rorug07G0294600 Rorug07G0294600 Rorug07G0295400 Rorug07G0295400
rosa_samantha	Rh1AG363600 Rh1BG122700 Rh1CG048900 Rh1CG366200 Rh1DG053200 Rh1DG383900 Rh2BG407500 Rh2CG090200 Rh2CG606900 Rh2DG420300 Rh2DG655300 Rh3DG114600 Rh4AG182100 Rh4CG412200 Rh4CG453300 Rh4DG240200 Rh4DG240300 Rh5AG138000 Rh5BG568100 Rh5DG205500 Rh6AG006600 Rh6AG084300 Rh6AG150400 Rh6BG073500 Rh6BG279100 Rh6CG073700 Rh6DG070600 Rh7AG101500 Rh7DG439100
rosa_wichuraiana	Rw2G020930 Rw7G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	40
AciI	CCGC	5 cut(s)	86, 105, 120, 452, 460
AclWI	GGATC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	398
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	2 cut(s)	73, 383
AfiI	CCNNNNNNNGG	3 cut(s)	68, 232, 466
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	4 cut(s)	10, 322, 334, 515
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	3 cut(s)	140, 379, 430
AluI	AGCT	3 cut(s)	140, 379, 430
Alw21I	GWGCWC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	53
AoxI	GGCC	4 cut(s)	106, 199, 223, 315
ApeKI	GCWGC	3 cut(s)	185, 427, 494
ApoI	RAATTY	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	40
AsuHPI	GGTGA	5 cut(s)	35, 100, 110, 176, 230
BanII	GRGCYC	2 cut(s)	142, 154
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	3 cut(s)	172, 439, 481
BccI	CCATC	6 cut(s)	62, 110, 128, 173, 215, 413
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	63
BclI	TGATCA	1 cut(s)	25
BfaI	CTAG	2 cut(s)	252, 422
BfmI	CTRYAG	1 cut(s)	390
BfrI	CTTAAG	1 cut(s)	305
BglI	GCCNNNNNGGC	1 cut(s)	207
BisI	GCNGC	5 cut(s)	106, 186, 428, 452, 495
BlsI	GCNGC	5 cut(s)	107, 187, 429, 453, 496
Bme1390I	CCNGG	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	94, 109, 146
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 232, 466
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	3 cut(s)	94, 109, 146
BseGI	GGATG	2 cut(s)	121, 184
BseLI	CCNNNNNNNGG	3 cut(s)	68, 232, 466
BseMII	CTCAG	1 cut(s)	438
BseRI	GAGGAG	1 cut(s)	132
BseXI	GCAGC	3 cut(s)	172, 439, 481
Bsh1236I	CGCG	1 cut(s)	40
BshFI	GGCC	4 cut(s)	108, 201, 225, 317
BsiHKAI	GWGCWC	1 cut(s)	142
BslFI	GGGAC	1 cut(s)	359
BslI	CCNNNNNNNGG	3 cut(s)	68, 232, 466
BsmFI	GGGAC	1 cut(s)	359
BsnI	GGCC	4 cut(s)	108, 201, 225, 317
Bsp1286I	GDGCHC	2 cut(s)	142, 154
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	3 cut(s)	25, 58, 166
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	5 cut(s)	86, 105, 120, 452, 460
BspANI	GGCC	4 cut(s)	108, 201, 225, 317
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	1 cut(s)	40
BspPI	GGATC	1 cut(s)	53
BspTI	CTTAAG	1 cut(s)	305
BsrGI	TGTACA	1 cut(s)	381
BssECI	CCNNGG	3 cut(s)	94, 109, 146
BssMI	GATC	3 cut(s)	25, 58, 166
BssT1I	CCWWGG	2 cut(s)	109, 146
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	76, 98
BstAFI	CTTAAG	1 cut(s)	305
BstAUI	TGTACA	1 cut(s)	381
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	2 cut(s)	94, 109
BstF5I	GGATG	2 cut(s)	121, 184
BstFNI	CGCG	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	3 cut(s)	28, 61, 169
BstMBI	GATC	3 cut(s)	25, 58, 166
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 207, 401
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstSFI	CTRYAG	1 cut(s)	390
BstUI	CGCG	1 cut(s)	40
BstV1I	GCAGC	3 cut(s)	172, 439, 481
BstXI	CCANNNNNNTGG	1 cut(s)	116
BsuRI	GGCC	4 cut(s)	108, 201, 225, 317
BtgI	CCRYGG	2 cut(s)	94, 109
BtgZI	GCGATG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	121, 184
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
CfoI	GCGC	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	72, 382
CviAII	CATG	2 cut(s)	110, 337
CviQI	GTAC	2 cut(s)	72, 382
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	3 cut(s)	27, 60, 168
DpnII	GATC	3 cut(s)	25, 58, 166
EaeI	YGGCCR	1 cut(s)	106
Ecl136II	GAGCTC	1 cut(s)	140
Eco130I	CCWWGG	2 cut(s)	109, 146
Eco147I	AGGCCT	1 cut(s)	317
Eco24I	GRGCYC	2 cut(s)	142, 154
Eco53kI	GAGCTC	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	2 cut(s)	109, 146
EcoT38I	GRGCYC	2 cut(s)	142, 154
ErhI	CCWWGG	2 cut(s)	109, 146
FaeI	CATG	2 cut(s)	113, 340
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	2 cut(s)	109, 336
FauI	CCCGC	1 cut(s)	467
FauNDI	CATATG	1 cut(s)	490
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	5 cut(s)	106, 186, 428, 452, 495
FokI	GGATG	2 cut(s)	128, 191
FriOI	GRGCYC	2 cut(s)	142, 154
Fsp4HI	GCNGC	5 cut(s)	106, 186, 428, 452, 495
FspBI	CTAG	2 cut(s)	252, 422
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	5 cut(s)	106, 186, 428, 452, 495
GsuI	CTGGAG	1 cut(s)	84
HaeIII	GGCC	4 cut(s)	108, 201, 225, 317
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	113, 340
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	2 cut(s)	340, 353
HphI	GGTGA	5 cut(s)	35, 100, 110, 176, 230
Hpy166II	GTNNAC	2 cut(s)	91, 442
Hpy188I	TCNGA	1 cut(s)	448
Hpy188III	TCNNGA	3 cut(s)	29, 283, 344
Hpy8I	GTNNAC	2 cut(s)	91, 442
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	3 cut(s)	223, 292, 368
HpyCH4III	ACNGT	2 cut(s)	76, 98
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 207, 401
HpyF3I	CTNAG	1 cut(s)	447
Hsp92II	CATG	2 cut(s)	113, 340
HspAI	GCGC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	25, 58, 166
LmnI	GCTCC	2 cut(s)	137, 145
LpnPI	CCDG	8 cut(s)	14, 48, 75, 113, 147, 159, 201, 239
Lsp1109I	GCAGC	3 cut(s)	172, 439, 481
MaeI	CTAG	2 cut(s)	252, 422
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	3 cut(s)	27, 60, 168
MboI	GATC	3 cut(s)	25, 58, 166
MboII	GAAGA	1 cut(s)	258
MhlI	GDGCHC	2 cut(s)	142, 154
MluCI	AATT	3 cut(s)	262, 398, 432
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	2 cut(s)	14, 153
MseI	TTAA	2 cut(s)	306, 435
MslI	CAYNNNNRTG	2 cut(s)	114, 366
MspCI	CTTAAG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	40
MwoI	GCNNNNNNNGC	3 cut(s)	158, 207, 401
NcoI	CCATGG	1 cut(s)	109
NdeI	CATATG	1 cut(s)	490
NdeII	GATC	3 cut(s)	25, 58, 166
NlaIII	CATG	2 cut(s)	113, 340
NmuCI	GTSAC	1 cut(s)	98
PceI	AGGCCT	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	340
PfoI	TCCNGGA	1 cut(s)	61
PkrI	GCNGC	5 cut(s)	107, 187, 429, 453, 496
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
Psp124BI	GAGCTC	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
RsaI	GTAC	2 cut(s)	73, 383
RsaNI	GTAC	2 cut(s)	72, 382
RseI	CAYNNNNRTG	2 cut(s)	114, 366
SacI	GAGCTC	1 cut(s)	142
SaqAI	TTAA	2 cut(s)	306, 435
SatI	GCNGC	5 cut(s)	106, 186, 428, 452, 495
Sau3AI	GATC	3 cut(s)	25, 58, 166
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	2 cut(s)	142, 154
SetI	ASST	6 cut(s)	25, 142, 234, 381, 432, 441
SfcI	CTRYAG	1 cut(s)	390
SmiMI	CAYNNNNRTG	2 cut(s)	114, 366
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	3 cut(s)	262, 398, 432
SseBI	AGGCCT	1 cut(s)	317
SsiI	CCGC	5 cut(s)	86, 105, 120, 452, 460
SspMI	CTAG	2 cut(s)	252, 422
SstI	GAGCTC	1 cut(s)	142
StuI	AGGCCT	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	2 cut(s)	109, 146
TaaI	ACNGT	2 cut(s)	76, 98
TaqI	TCGA	1 cut(s)	19
TasI	AATT	3 cut(s)	262, 398, 432
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	2 cut(s)	108, 454
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	2 cut(s)	306, 435
Tru9I	TTAA	2 cut(s)	306, 435
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	3 cut(s)	185, 427, 494
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	429
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	1 cut(s)	300
Vha464I	CTTAAG	1 cut(s)	305
XapI	RAATTY	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	463
XspI	CTAG	2 cut(s)	252, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.