Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001047

Physical Location & Seq

Genomic Coordinates Forward (+)

44878472 .. 44878973

Gene Structure 502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG240300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGGGATGGCTGTTTCTAGGGCAATGGAGCTCCTACTTGGGCTCTATGGGCTGGTGATCGTTCTGGGGATGGGGATGCTCAACGTGGTGGATTGTTTGGCTATGCTGGTGATGGCCTGCAGGTGGTCAATAGGGGAGGCGGCGTCTTTGCCGGCGACGGCGACGGTGACATGCAACTTGGGAGCGGCCATGTTGTGGAGCAGCTGGTTGTTAGGGTTTCAGAAAATTTGGGCTGTTGGGCTCAAGTATTGGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

85

Amino Acids

9.11

Weight (kDa)

7.71

Isoelectric Point (pI)

25.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001047)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c11g0499391 RchiOBHm_Chr3g0447361 RchiOBHm_Chr7g0218341 RchiOBHm_Chr7g0226151 RchiOBHm_Chr7g0236171 RchiOBHm_Chr7g0236221
rosa_laevigata	RLG00000001100 RLG00000001939 RLG00000012810 RLG00000013102 RLG00000013301 RLG00000020513 RLG00000030019 RLG00000037087
rosa_multiflora	Rmu_sc0000570.1_g000004 Rmu_sc0010974.1_g000003 Rmu_sc0014688.1_g000003 Rmu_sc0040332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000490 Rroxscaffold_3G00225330 Rroxscaffold_3G00227720 Rroxscaffold_6G00410030 Rroxscaffold_7G00159290
rosa_rugosa	Rorug03G0036000 Rorug05G0301600 Rorug07G0294600 Rorug07G0294600 Rorug07G0294600 Rorug07G0295400 Rorug07G0295400
rosa_samantha	Rh1AG363600 Rh1BG122700 Rh1CG048900 Rh1CG366200 Rh1DG053200 Rh1DG383900 Rh2BG407500 Rh2CG090200 Rh2CG606900 Rh2DG420300 Rh2DG655300 Rh3DG114600 Rh4AG182100 Rh4CG412200 Rh4CG453300 Rh4DG240200 Rh4DG240300 Rh5AG138000 Rh5BG568100 Rh5DG205500 Rh6AG006600 Rh6AG084300 Rh6AG150400 Rh6BG073500 Rh6BG279100 Rh6CG073700 Rh6DG070600 Rh7AG101500 Rh7DG439100
rosa_wichuraiana	Rw2G020930 Rw7G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	111
Acc36I	ACCTGC	1 cut(s)	111
AccB7I	CCANNNNNTGG	1 cut(s)	195
AccBSI	CCGCTC	1 cut(s)	185
AciI	CCGC	2 cut(s)	140, 185
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	225
AcyI	GRCGYC	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	123, 195
AluBI	AGCT	2 cut(s)	31, 204
AluI	AGCT	2 cut(s)	31, 204
Alw21I	GWGCWC	1 cut(s)	33
AoxI	GGCC	2 cut(s)	114, 186
ApeKI	GCWGC	1 cut(s)	201
ApoI	RAATTY	1 cut(s)	225
AsuHPI	GGTGA	3 cut(s)	67, 121, 178
BanII	GRGCYC	3 cut(s)	33, 45, 243
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	2 cut(s)	64, 106
BceAI	ACGGC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	118
BfuAI	ACCTGC	1 cut(s)	111
BisI	GCNGC	3 cut(s)	141, 186, 202
BlsI	GCNGC	3 cut(s)	142, 187, 203
BmsI	GCATC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 195
Bse118I	RCCGGY	1 cut(s)	151
Bse3DI	GCAATG	1 cut(s)	30
BseGI	GGATG	3 cut(s)	12, 75, 81
BseLI	CCNNNNNNNGG	2 cut(s)	123, 195
BseMI	GCAATG	1 cut(s)	30
BseXI	GCAGC	1 cut(s)	213
BshFI	GGCC	2 cut(s)	116, 188
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	123, 195
BsnI	GGCC	2 cut(s)	116, 188
Bsp1286I	GDGCHC	3 cut(s)	33, 45, 243
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	2 cut(s)	140, 185
BspANI	GGCC	2 cut(s)	116, 188
BspMAI	CTGCAG	1 cut(s)	122
BspMI	ACCTGC	1 cut(s)	111
BsrBI	CCGCTC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	30
BsrFI	RCCGGY	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	151
BssMI	GATC	1 cut(s)	57
BssNI	GRCGYC	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	166
BstACI	GRCGYC	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	118, 153
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	3 cut(s)	12, 75, 81
BstKTI	GATC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	174
BstSFI	CTRYAG	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	116, 188
BtsCI	GGATG	3 cut(s)	12, 75, 81
BveI	ACCTGC	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	118, 153
Cfr10I	RCCGGY	1 cut(s)	151
CseI	GACGC	1 cut(s)	132
CviAII	CATG	2 cut(s)	171, 190
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
EaeI	YGGCCR	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	31
Eco24I	GRGCYC	3 cut(s)	33, 45, 243
Eco53kI	GAGCTC	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	31
EcoT38I	GRGCYC	3 cut(s)	33, 45, 243
FaeI	CATG	2 cut(s)	174, 193
FaiI	YATR	4 cut(s)	48, 104, 172, 191
FatI	CATG	2 cut(s)	170, 189
Fnu4HI	GCNGC	3 cut(s)	141, 186, 202
FokI	GGATG	3 cut(s)	19, 82, 88
FriOI	GRGCYC	3 cut(s)	33, 45, 243
Fsp4HI	GCNGC	3 cut(s)	141, 186, 202
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	3 cut(s)	141, 186, 202
HaeIII	GGCC	2 cut(s)	116, 188
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	132
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	174, 193
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	3 cut(s)	67, 121, 178
Hpy188I	TCNGA	1 cut(s)	222
Hpy99I	CGWCG	2 cut(s)	160, 166
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	2 cut(s)	120, 174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	174, 193
KroI	GCCGGC	1 cut(s)	151
KroNI	GCCGGC	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	57
LmnI	GCTCC	4 cut(s)	28, 36, 182, 198
LpnPI	CCDG	7 cut(s)	38, 50, 92, 106, 130, 165, 190
Lsp1109I	GCAGC	1 cut(s)	213
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	59
MbiI	CCGCTC	1 cut(s)	185
MboI	GATC	1 cut(s)	57
MhlI	GDGCHC	3 cut(s)	33, 45, 243
MluCI	AATT	1 cut(s)	225
MnlI	CCTC	1 cut(s)	130
MroNI	GCCGGC	1 cut(s)	151
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	49
NaeI	GCCGGC	1 cut(s)	153
NdeII	GATC	1 cut(s)	57
NgoMIV	GCCGGC	1 cut(s)	151
NlaIII	CATG	2 cut(s)	174, 193
NmuCI	GTSAC	1 cut(s)	166
NspI	RCATGY	1 cut(s)	174
PaqCI	CACCTGC	1 cut(s)	111
PdiI	GCCGGC	1 cut(s)	153
PflMI	CCANNNNNTGG	1 cut(s)	195
PkrI	GCNGC	3 cut(s)	142, 187, 203
Psp124BI	GAGCTC	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	204
SacI	GAGCTC	1 cut(s)	33
SatI	GCNGC	3 cut(s)	141, 186, 202
Sau3AI	GATC	1 cut(s)	57
SbfI	CCTGCAGG	1 cut(s)	122
SdaI	CCTGCAGG	1 cut(s)	122
SduI	GDGCHC	3 cut(s)	33, 45, 243
SetI	ASST	4 cut(s)	33, 87, 125, 206
SfaNI	GCATC	1 cut(s)	66
SfcI	CTRYAG	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse8387I	CCTGCAGG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	225
SsiI	CCGC	2 cut(s)	140, 185
SspMI	CTAG	1 cut(s)	18
SstI	GAGCTC	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	166
TaiI	ACGT	1 cut(s)	87
TasI	AATT	1 cut(s)	225
TauI	GCSGC	2 cut(s)	143, 188
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	1 cut(s)	201
Tsp45I	GTSAC	1 cut(s)	166
Van91I	CCANNNNNTGG	1 cut(s)	195
XapI	RAATTY	1 cut(s)	225
XceI	RCATGY	1 cut(s)	174
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.