Rorug03G0036000

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
2845062 .. 2846509
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0036000.1

Sequence Viewer

Length: 480 bp
ATGGGTTTGAGCTACGTTTTGAAAGGTGACTCCAAAGTTTGGCATACATGGTGGCAGAAGTTTACTTCAACCAACTTTCTTTCCCAAGAGAGGCTTACATTTGATGAAGAGACGTTTGTCAATGTAAACAACATCAAAACGCAGAATTTGGCAAGCCAGAGAGCTAATGGATTTCACAATCAATATATAGTGGTTACAATATTCTTGGCAATTGAAGGAAAATATATGTTACCCAGCATCAATAGCAGTCCTGAGTTGAAGGAAGTACTGCAGAAACTTTCATCTATCGAAAGACTACGGGCAGTTGAAGTGTTGTGGACTCCTCAGAATGAAACAAACACTCTATTAGAGGAGCAACTGCTTAAAAGTTACCCACACTTGAAGCACTTTGAGAAGATGTGTTGTACAGAAATGACATGTCTGAGAAACTCCTCGATCTATATAGAAGTTTCCCGCTGCAATATATCCAATCCGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.54

Weight (kDa)

6.9

Isoelectric Point (pI)

53.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 25 - 129 3.7e-29 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 39
AciI CCGC 1 cut(s) 454
AcsI RAATTY 1 cut(s) 145
AfaI GTAC 2 cut(s) 267, 406
AfiI CCNNNNNNNGG 2 cut(s) 39, 90
AflIII ACRYGT 1 cut(s) 416
AgsI TTSAA 6 cut(s) 22, 69, 215, 259, 308, 382
AluBI AGCT 2 cut(s) 12, 164
AluI AGCT 2 cut(s) 12, 164
Alw26I GTCTC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 456
ApoI RAATTY 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 38
BbvI GCAGC 1 cut(s) 443
BcoDI GTCTC 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 269
BisI GCNGC 1 cut(s) 457
BlsI GCNGC 1 cut(s) 458
BmcAI AGTACT 1 cut(s) 267
BmsI GCATC 1 cut(s) 246
BoxI GACNNNNGTC 1 cut(s) 116
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 90
BseLI CCNNNNNNNGG 2 cut(s) 39, 90
BseMII CTCAG 3 cut(s) 243, 338, 413
BseRI GAGGAG 3 cut(s) 312, 365, 421
BseXI GCAGC 1 cut(s) 443
BseYI CCCAGC 1 cut(s) 233
BslI CCNNNNNNNGG 2 cut(s) 39, 90
BsmAI GTCTC 1 cut(s) 104
BsmBI CGTCTC 1 cut(s) 104
Bsp1407I TGTACA 1 cut(s) 404
Bsp143I GATC 1 cut(s) 435
BspACI CCGC 1 cut(s) 454
BspCNI CTCAG 3 cut(s) 244, 337, 414
BspMAI CTGCAG 1 cut(s) 273
BsrGI TGTACA 1 cut(s) 404
BssMI GATC 1 cut(s) 435
Bst6I CTCTTC 1 cut(s) 102
BstAUI TGTACA 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 3 cut(s) 252, 324, 422
BstKTI GATC 1 cut(s) 438
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 1 cut(s) 435
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstNSI RCATGY 1 cut(s) 420
BstPAI GACNNNNGTC 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 443
Cac8I GCNNGC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 266, 405
CviAII CATG 2 cut(s) 48, 417
CviJI RGCY 4 cut(s) 12, 94, 156, 164
CviKI_1 RGCY 4 cut(s) 12, 94, 156, 164
CviQI GTAC 2 cut(s) 266, 405
DdeI CTNAG 3 cut(s) 252, 324, 422
DpnI GATC 1 cut(s) 437
DpnII GATC 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Esp3I CGTCTC 1 cut(s) 104
FaeI CATG 2 cut(s) 51, 420
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 2 cut(s) 47, 416
FauI CCCGC 1 cut(s) 461
Fnu4HI GCNGC 1 cut(s) 457
Fsp4HI GCNGC 1 cut(s) 457
GluI GCNGC 1 cut(s) 457
GsaI CCCAGC 1 cut(s) 237
Hin1II CATG 2 cut(s) 51, 420
HinfI GANTC 2 cut(s) 29, 319
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 3 cut(s) 63, 127, 318
Hpy188I TCNGA 2 cut(s) 327, 423
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 3 cut(s) 63, 127, 318
HpyAV CCTTC 2 cut(s) 209, 253
HpyCH4IV ACGT 2 cut(s) 15, 113
HpyCH4V TGCA 2 cut(s) 271, 459
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
HpyF3I CTNAG 3 cut(s) 252, 324, 422
HpySE526I ACGT 2 cut(s) 15, 113
Hsp92II CATG 2 cut(s) 51, 420
Kzo9I GATC 1 cut(s) 435
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 3 cut(s) 170, 247, 264
Lsp1109I GCAGC 1 cut(s) 443
LweI GCATC 1 cut(s) 246
MaeII ACGT 2 cut(s) 15, 113
MaeIII GTNAC 4 cut(s) 26, 193, 228, 368
MalI GATC 1 cut(s) 437
MboI GATC 1 cut(s) 435
MboII GAAGA 2 cut(s) 119, 406
MfeI CAATTG 1 cut(s) 210
MluCI AATT 2 cut(s) 145, 210
MlyI GAGTC 2 cut(s) 23, 313
MnlI CCTC 4 cut(s) 84, 333, 343, 442
MseI TTAA 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 456
MunI CAATTG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 243
NdeII GATC 1 cut(s) 435
NlaIII CATG 2 cut(s) 51, 420
NmuCI GTSAC 1 cut(s) 26
NspI RCATGY 1 cut(s) 420
PciI ACATGT 1 cut(s) 416
PflMI CCANNNNNTGG 1 cut(s) 39
PkrI GCNGC 1 cut(s) 458
PleI GAGTC 2 cut(s) 23, 313
PpsI GAGTC 2 cut(s) 23, 313
PscI ACATGT 1 cut(s) 416
PshAI GACNNNNGTC 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 233
PstI CTGCAG 1 cut(s) 273
RsaI GTAC 2 cut(s) 267, 406
RsaNI GTAC 2 cut(s) 266, 405
SaqAI TTAA 1 cut(s) 363
SatI GCNGC 1 cut(s) 457
Sau3AI GATC 1 cut(s) 435
ScaI AGTACT 1 cut(s) 267
SchI GAGTC 2 cut(s) 23, 313
SetI ASST 5 cut(s) 14, 18, 28, 116, 166
SfaNI GCATC 1 cut(s) 246
SfcI CTRYAG 1 cut(s) 269
Sse9I AATT 2 cut(s) 145, 210
SsiI CCGC 1 cut(s) 454
SspI AATATT 1 cut(s) 201
TaiI ACGT 2 cut(s) 18, 116
TaqI TCGA 2 cut(s) 288, 434
TasI AATT 2 cut(s) 145, 210
TatI WGTACW 2 cut(s) 265, 404
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 1 cut(s) 456
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 3 cut(s) 120, 270, 345
TspGWI ACGGA 1 cut(s) 462
Van91I CCANNNNNTGG 1 cut(s) 39
XapI RAATTY 1 cut(s) 145
XceI RCATGY 1 cut(s) 420
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
ZrmI AGTACT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.