Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010974.1

Orthogroup ID

OG0001047

Physical Location & Seq

Genomic Coordinates Forward (+)

12130 .. 13029

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010974.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atggcgagttctagttcccccaattcttctgtccgtgtcatcaagaaatatgcagtggagggtcttaaggacaaggccttgaaagaacacttgaacatgattcgggacaaagactcccttcacaaatatggggcaaagctgtacaaatctatagcaaaattcgccatcgttgatgaagccctagagcagctaattaaggttcactctgagccgcccacccgcactatggtcattgggaacaatcaagtaatgtcatacacttgttctcgcaattcttctgtcgatgacctcaagaaacatgcaatggaggttttcaaggatgcgaccaaagattgtgaggacaaggacatgaaagaaaaatttgacatgattcaggactacagttcccttgagaaatctgcgtttatgttcttcaattctatggtgaattcaggcttccttgacgaagctgaagagctccttaagaaggccatactgcccgttgtggcggtccacacctatgtcattggggttggggtcgctgccggcaataccaatgctgctctcaaggcctttcagcacatgtcagcctctggggttgctccaaactcctatacttatgcagttttgatcaagggactcactgctgaccccaactactgtggagatgccaagaagttcttgcttgagatgatggacaagggtatgaggcccaatgctgctacctacactgcagtgatagagggctttgcaaagctggaggacaaggcagctgaggaggagggcaaacagttggtggagttgatgatgcataaggggtttgtgccaaatgcaaaggctatgatggtggttctaaagggaaggccaaaacctttaattagaagggttatcaacattgcgctttccaagttgaagggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

299

Amino Acids

33.03

Weight (kDa)

9.04

Isoelectric Point (pI)

29.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001047)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c11g0499391 RchiOBHm_Chr3g0447361 RchiOBHm_Chr7g0218341 RchiOBHm_Chr7g0226151 RchiOBHm_Chr7g0236171 RchiOBHm_Chr7g0236221
rosa_laevigata	RLG00000001100 RLG00000001939 RLG00000012810 RLG00000013102 RLG00000013301 RLG00000020513 RLG00000030019 RLG00000037087
rosa_multiflora	Rmu_sc0000570.1_g000004 Rmu_sc0010974.1_g000003 Rmu_sc0014688.1_g000003 Rmu_sc0040332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000490 Rroxscaffold_3G00225330 Rroxscaffold_3G00227720 Rroxscaffold_6G00410030 Rroxscaffold_7G00159290
rosa_rugosa	Rorug03G0036000 Rorug05G0301600 Rorug07G0294600 Rorug07G0294600 Rorug07G0294600 Rorug07G0295400 Rorug07G0295400
rosa_samantha	Rh1AG363600 Rh1BG122700 Rh1CG048900 Rh1CG366200 Rh1DG053200 Rh1DG383900 Rh2BG407500 Rh2CG090200 Rh2CG606900 Rh2DG420300 Rh2DG655300 Rh3DG114600 Rh4AG182100 Rh4CG412200 Rh4CG453300 Rh4DG240200 Rh4DG240300 Rh5AG138000 Rh5BG568100 Rh5DG205500 Rh6AG006600 Rh6AG084300 Rh6AG150400 Rh6BG073500 Rh6BG279100 Rh6CG073700 Rh6DG070600 Rh7AG101500 Rh7DG439100
rosa_wichuraiana	Rw2G020930 Rw7G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	212, 220, 488
AcsI	RAATTY	3 cut(s)	158, 359, 427
AcuI	CTGAAG	1 cut(s)	471
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	226, 466
AflII	CTTAAG	2 cut(s)	65, 461
AflIII	ACRYGT	1 cut(s)	561
AgsI	TTSAA	5 cut(s)	82, 94, 316, 415, 892
AleI	CACNNNNGTG	1 cut(s)	713
AluBI	AGCT	6 cut(s)	139, 190, 449, 457, 736, 752
AluI	AGCT	6 cut(s)	139, 190, 449, 457, 736, 752
Alw21I	GWGCWC	1 cut(s)	459
AlwNI	CAGNNNCTG	1 cut(s)	572
AoxI	GGCC	5 cut(s)	75, 468, 549, 689, 842
ApeKI	GCWGC	5 cut(s)	187, 521, 539, 698, 749
ApoI	RAATTY	3 cut(s)	158, 359, 427
AspLEI	GCGC	1 cut(s)	880
AspS9I	GGNCC	2 cut(s)	490, 690
AsuHPI	GGTGA	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	459
BbvCI	CCTCAGC	1 cut(s)	753
BbvI	GCAGC	5 cut(s)	199, 508, 526, 685, 761
BccI	CCATC	3 cut(s)	173, 667, 817
BclI	TGATCA	1 cut(s)	609
BfaI	CTAG	2 cut(s)	12, 182
BfmI	CTRYAG	3 cut(s)	150, 379, 711
BfrI	CTTAAG	2 cut(s)	65, 461
BisI	GCNGC	6 cut(s)	188, 212, 522, 540, 699, 750
BlsI	GCNGC	6 cut(s)	189, 213, 523, 541, 700, 751
Bme18I	GGWCC	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	490, 690
BmsI	GCATC	3 cut(s)	310, 637, 777
BpmI	CTGGAG	1 cut(s)	758
Bpu10I	CCTNAGC	1 cut(s)	753
BpuEI	CTTGAG	4 cut(s)	275, 410, 530, 686
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 466
Bse118I	RCCGGY	1 cut(s)	524
Bse3DI	GCAATG	2 cut(s)	309, 873
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	2 cut(s)	226, 466
BseMI	GCAATG	2 cut(s)	309, 873
BseMII	CTCAG	2 cut(s)	198, 744
BseRI	GAGGAG	2 cut(s)	770, 773
BseXI	GCAGC	5 cut(s)	199, 508, 526, 685, 761
BshFI	GGCC	5 cut(s)	77, 470, 551, 691, 844
BsiHKAI	GWGCWC	1 cut(s)	459
BsiSI	CCGG	1 cut(s)	525
BslFI	GGGAC	2 cut(s)	119, 630
BslI	CCNNNNNNNGG	2 cut(s)	226, 466
BsmFI	GGGAC	2 cut(s)	119, 630
BsnI	GGCC	5 cut(s)	77, 470, 551, 691, 844
Bsp1286I	GDGCHC	1 cut(s)	459
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	609
BspACI	CCGC	3 cut(s)	212, 220, 488
BspANI	GGCC	5 cut(s)	77, 470, 551, 691, 844
BspCNI	CTCAG	2 cut(s)	199, 745
BspMAI	CTGCAG	1 cut(s)	715
BspQI	GCTCTTC	1 cut(s)	447
BspTI	CTTAAG	2 cut(s)	65, 461
BsrDI	GCAATG	2 cut(s)	309, 873
BsrFI	RCCGGY	1 cut(s)	524
BsrGI	TGTACA	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	524
BssMI	GATC	1 cut(s)	609
Bst4CI	ACNGT	3 cut(s)	383, 641, 771
Bst6I	CTCTTC	1 cut(s)	447
BstAFI	CTTAAG	2 cut(s)	65, 461
BstAUI	TGTACA	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	2 cut(s)	207, 753
BstENI	CCTNNNNNAGG	1 cut(s)	464
BstF5I	GGATG	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	880
BstKTI	GATC	1 cut(s)	612
BstMBI	GATC	1 cut(s)	609
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 548
BstNSI	RCATGY	2 cut(s)	302, 565
BstSFI	CTRYAG	3 cut(s)	150, 379, 711
BstV1I	GCAGC	5 cut(s)	199, 508, 526, 685, 761
BsuRI	GGCC	5 cut(s)	77, 470, 551, 691, 844
BtsCI	GGATG	1 cut(s)	325
BtsI	GCAGTG	4 cut(s)	60, 621, 708, 720
BtsIMutI	CAGTG	4 cut(s)	60, 621, 708, 720
Cac8I	GCNNGC	1 cut(s)	526
CaiI	CAGNNNCTG	1 cut(s)	572
CfoI	GCGC	1 cut(s)	880
Cfr10I	RCCGGY	1 cut(s)	524
Cfr13I	GGNCC	2 cut(s)	490, 690
Csp6I	GTAC	1 cut(s)	142
CspCI	CAANNNNNGTGG	2 cut(s)	622, 657
CviAII	CATG	5 cut(s)	97, 299, 349, 367, 562
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	2 cut(s)	207, 753
DpnI	GATC	1 cut(s)	611
DpnII	GATC	1 cut(s)	609
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Ecl136II	GAGCTC	1 cut(s)	457
Eco147I	AGGCCT	2 cut(s)	77, 551
Eco24I	GRGCYC	1 cut(s)	459
Eco47I	GGWCC	1 cut(s)	490
Eco53kI	GAGCTC	1 cut(s)	457
Eco57I	CTGAAG	1 cut(s)	471
EcoICRI	GAGCTC	1 cut(s)	457
EcoNI	CCTNNNNNAGG	1 cut(s)	464
EcoRI	GAATTC	1 cut(s)	427
EcoT22I	ATGCAT	1 cut(s)	792
EcoT38I	GRGCYC	1 cut(s)	459
FaeI	CATG	5 cut(s)	100, 302, 352, 370, 565
FalI	AAGNNNNNCTT	6 cut(s)	102, 134, 444, 476, 644, 676
FaqI	GGGAC	2 cut(s)	119, 630
FatI	CATG	5 cut(s)	96, 298, 348, 366, 561
FauI	CCCGC	1 cut(s)	227
FbaI	TGATCA	1 cut(s)	609
Fnu4HI	GCNGC	6 cut(s)	188, 212, 522, 540, 699, 750
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	6 cut(s)	188, 212, 522, 540, 699, 750
FspBI	CTAG	2 cut(s)	12, 182
GlaI	GCGC	1 cut(s)	879
GluI	GCNGC	6 cut(s)	188, 212, 522, 540, 699, 750
GsuI	CTGGAG	1 cut(s)	758
HaeIII	GGCC	5 cut(s)	77, 470, 551, 691, 844
HapII	CCGG	1 cut(s)	525
HhaI	GCGC	1 cut(s)	880
Hin1II	CATG	5 cut(s)	100, 302, 352, 370, 565
Hin6I	GCGC	1 cut(s)	878
HinP1I	GCGC	1 cut(s)	878
HinfI	GANTC	4 cut(s)	100, 113, 370, 618
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	2 cut(s)	202, 493
Hpy188I	TCNGA	1 cut(s)	208
Hpy188III	TCNNGA	4 cut(s)	43, 104, 292, 374
Hpy8I	GTNNAC	2 cut(s)	202, 493
HpyAV	CCTTC	5 cut(s)	128, 460, 834, 855, 886
HpyCH4III	ACNGT	3 cut(s)	383, 641, 771
HpyCH4V	TGCA	7 cut(s)	53, 302, 602, 713, 731, 790, 812
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 548
HpyF3I	CTNAG	2 cut(s)	207, 753
Hsp92II	CATG	5 cut(s)	100, 302, 352, 370, 565
HspAI	GCGC	1 cut(s)	878
KroI	GCCGGC	1 cut(s)	524
KroNI	GCCGGC	1 cut(s)	526
Ksp22I	TGATCA	1 cut(s)	609
Kzo9I	GATC	1 cut(s)	609
LguI	GCTCTTC	1 cut(s)	447
LmnI	GCTCC	2 cut(s)	462, 586
LpnPI	CCDG	5 cut(s)	359, 417, 538, 558, 722
Lsp1109I	GCAGC	5 cut(s)	199, 508, 526, 685, 761
LweI	GCATC	3 cut(s)	310, 637, 777
MaeI	CTAG	2 cut(s)	12, 182
MalI	GATC	1 cut(s)	611
MboI	GATC	1 cut(s)	609
MboII	GAAGA	4 cut(s)	18, 267, 403, 464
MhlI	GDGCHC	1 cut(s)	459
MluCI	AATT	8 cut(s)	22, 158, 192, 271, 359, 415, 427, 855
MlyI	GAGTC	2 cut(s)	107, 612
Mph1103I	ATGCAT	1 cut(s)	792
MroNI	GCCGGC	1 cut(s)	524
MseI	TTAA	4 cut(s)	66, 195, 462, 854
MslI	CAYNNNNRTG	3 cut(s)	126, 498, 713
MspA1I	CMGCKG	1 cut(s)	752
MspCI	CTTAAG	2 cut(s)	65, 461
MspI	CCGG	1 cut(s)	525
MwoI	GCNNNNNNNGC	2 cut(s)	161, 548
NaeI	GCCGGC	1 cut(s)	526
NdeII	GATC	1 cut(s)	609
NgoMIV	GCCGGC	1 cut(s)	524
NlaIII	CATG	5 cut(s)	100, 302, 352, 370, 565
NsiI	ATGCAT	1 cut(s)	792
NspI	RCATGY	2 cut(s)	302, 565
OliI	CACNNNNGTG	1 cut(s)	713
PceI	AGGCCT	2 cut(s)	77, 551
PciI	ACATGT	1 cut(s)	561
PciSI	GCTCTTC	1 cut(s)	447
PdiI	GCCGGC	1 cut(s)	526
PfeI	GAWTC	2 cut(s)	100, 370
PkrI	GCNGC	6 cut(s)	189, 213, 523, 541, 700, 751
PleI	GAGTC	2 cut(s)	107, 612
PpsI	GAGTC	2 cut(s)	107, 612
PscI	ACATGT	1 cut(s)	561
Psp124BI	GAGCTC	1 cut(s)	459
PspPI	GGNCC	2 cut(s)	490, 690
PstI	CTGCAG	1 cut(s)	715
PstNI	CAGNNNCTG	1 cut(s)	572
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
RseI	CAYNNNNRTG	3 cut(s)	126, 498, 713
SacI	GAGCTC	1 cut(s)	459
SapI	GCTCTTC	1 cut(s)	447
SaqAI	TTAA	4 cut(s)	66, 195, 462, 854
SatI	GCNGC	6 cut(s)	188, 212, 522, 540, 699, 750
Sau3AI	GATC	1 cut(s)	609
Sau96I	GGNCC	2 cut(s)	490, 690
SchI	GAGTC	2 cut(s)	107, 612
SduI	GDGCHC	1 cut(s)	459
SfaNI	GCATC	3 cut(s)	310, 637, 777
SfcI	CTRYAG	3 cut(s)	150, 379, 711
SinI	GGWCC	1 cut(s)	490
SmiMI	CAYNNNNRTG	3 cut(s)	126, 498, 713
SmlI	CTYRAG	6 cut(s)	65, 290, 389, 461, 545, 665
SmoI	CTYRAG	6 cut(s)	65, 290, 389, 461, 545, 665
Sse9I	AATT	8 cut(s)	22, 158, 192, 271, 359, 415, 427, 855
SseBI	AGGCCT	2 cut(s)	77, 551
SsiI	CCGC	3 cut(s)	212, 220, 488
SspMI	CTAG	2 cut(s)	12, 182
SstI	GAGCTC	1 cut(s)	459
StuI	AGGCCT	2 cut(s)	77, 551
TaaI	ACNGT	3 cut(s)	383, 641, 771
TaqI	TCGA	1 cut(s)	282
TasI	AATT	8 cut(s)	22, 158, 192, 271, 359, 415, 427, 855
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	2 cut(s)	100, 370
Tru1I	TTAA	4 cut(s)	66, 195, 462, 854
Tru9I	TTAA	4 cut(s)	66, 195, 462, 854
TscAI	CASTG	4 cut(s)	60, 628, 715, 720
TseI	GCWGC	5 cut(s)	187, 521, 539, 698, 749
TspDTI	ATGAA	2 cut(s)	189, 365
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	4 cut(s)	60, 628, 715, 720
Vha464I	CTTAAG	2 cut(s)	65, 461
VpaK11BI	GGWCC	1 cut(s)	490
XagI	CCTNNNNNAGG	1 cut(s)	464
XapI	RAATTY	3 cut(s)	158, 359, 427
XceI	RCATGY	2 cut(s)	302, 565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XspI	CTAG	2 cut(s)	12, 182
Zsp2I	ATGCAT	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.