Rh6CG073700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001047
Physical Location & Seq
Forward (+)
7619302 .. 7632844
13543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG073700.1

Sequence Viewer

Length: 588 bp
ATGGCTACTGCTCATCTGGTAGCTAATCGTTTCTTTCTTGGTTTTGCTTTTGCTTTCTTGCTCGGAGCGCCGCCTTGGTATGGGCTCCCTGTGGTTACTGTTTGGGAGGGTAGTGTTGCCGTTTGGATGGCTGATCGGAGGCCGAACTCTAACGGCGTGGTTCTGGTTTGGCCTAAGGTGGATGGGCGCATCTGGGTTTTGGATCAGGGTCGTCTGCCTTCCGACGGTGATAGGGATTGTACAATCGATTTGGTTGGCCCTGGTGGTTCGCTGCAGCGTCGTAGTGTTGCCGGAGTGGGGTTGGCCAGACCAGTTCAGGGGATCGATCAAAGCTTGGAGGATCTTCAGGTTGATAGTGATGCTGGATCTGCCCTTGATTCGTCTATTGATGGTGGTGGTAGCGACCGACGCGGTGGGGGTTGTCTCTGGTTCATGAAGGCGGAGTATCTGGTCTTCGATGGTGGAGGTGGTACTTTGTCTGGAGGCAGTGACGATTTCTGGGTGGAATCTGATCCCCTTGGGGTTGTGACCCACGGCGGTGGCGGCGATAGCTTGCACGGCTGTGACGGAGTGCGTGCGGTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

20.39

Weight (kDa)

4.51

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 411
AciI CCGC 6 cut(s) 71, 411, 440, 537, 543, 578
AclWI GGATC 5 cut(s) 210, 329, 348, 373, 506
AcoI YGGCCR 1 cut(s) 303
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 2 cut(s) 241, 472
AfiI CCNNNNNNNGG 4 cut(s) 80, 224, 297, 317
AjnI CCWGG 1 cut(s) 259
AleI CACNNNNGTG 2 cut(s) 537, 561
AluBI AGCT 3 cut(s) 23, 333, 552
AluI AGCT 3 cut(s) 23, 333, 552
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 5 cut(s) 210, 329, 348, 373, 506
AoxI GGCC 4 cut(s) 140, 170, 256, 303
ApeKI GCWGC 2 cut(s) 271, 274
AspLEI GCGC 2 cut(s) 70, 189
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 239
AxyI CCTNAGG 1 cut(s) 174
BalI TGGCCA 1 cut(s) 305
BanII GRGCYC 1 cut(s) 87
BarI GAAGNNNNNNTAC 2 cut(s) 437, 469
BbsI GAAGAC 1 cut(s) 445
BbvI GCAGC 2 cut(s) 258, 286
BccI CCATC 4 cut(s) 121, 176, 383, 452
BceAI ACGGC 4 cut(s) 104, 169, 550, 574
BciT130I CCWGG 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 428
BfmI CTRYAG 1 cut(s) 272
BfoI RGCGCY 1 cut(s) 71
BisI GCNGC 4 cut(s) 71, 272, 275, 544
BlsI GCNGC 4 cut(s) 72, 273, 276, 545
Bme1390I CCNGG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 2 cut(s) 198, 349
BpiI GAAGAC 1 cut(s) 445
BpmI CTGGAG 1 cut(s) 501
Bsa29I ATCGAT 2 cut(s) 246, 324
BsaJI CCNNGG 4 cut(s) 74, 259, 517, 532
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 224, 297, 317
Bse1I ACTGG 1 cut(s) 311
Bse21I CCTNAGG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 261
BseCI ATCGAT 2 cut(s) 246, 324
BseDI CCNNGG 4 cut(s) 74, 259, 517, 532
BseGI GGATG 2 cut(s) 132, 187
BseLI CCNNNNNNNGG 4 cut(s) 80, 224, 297, 317
BseNI ACTGG 1 cut(s) 311
BseXI GCAGC 2 cut(s) 258, 286
Bsh1236I CGCG 1 cut(s) 411
Bsh1285I CGRYCG 1 cut(s) 406
BshFI GGCC 4 cut(s) 142, 172, 258, 305
BshVI ATCGAT 2 cut(s) 246, 324
BsiEI CGRYCG 1 cut(s) 406
BsiSI CCGG 1 cut(s) 291
BslI CCNNNNNNNGG 4 cut(s) 80, 224, 297, 317
BsmAI GTCTC 1 cut(s) 428
BsnI GGCC 4 cut(s) 142, 172, 258, 305
Bsp1286I GDGCHC 1 cut(s) 87
Bsp1407I TGTACA 1 cut(s) 239
Bsp143I GATC 7 cut(s) 133, 202, 321, 325, 340, 365, 511
BspACI CCGC 6 cut(s) 71, 411, 440, 537, 543, 578
BspANI GGCC 4 cut(s) 142, 172, 258, 305
BspDI ATCGAT 2 cut(s) 246, 324
BspFNI CGCG 1 cut(s) 411
BspHI TCATGA 1 cut(s) 432
BspLI GGNNCC 1 cut(s) 86
BspMAI CTGCAG 1 cut(s) 276
BspPI GGATC 5 cut(s) 210, 329, 348, 373, 506
BsrGI TGTACA 1 cut(s) 239
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 4 cut(s) 74, 259, 517, 532
BssMI GATC 7 cut(s) 133, 202, 321, 325, 340, 365, 511
BssT1I CCWWGG 2 cut(s) 74, 517
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 100, 227
BstAUI TGTACA 1 cut(s) 239
BstC8I GCNNGC 2 cut(s) 554, 576
BstDEI CTNAG 1 cut(s) 174
BstDSI CCRYGG 1 cut(s) 532
BstF5I GGATG 2 cut(s) 132, 187
BstFNI CGCG 1 cut(s) 411
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 2 cut(s) 70, 189
BstKTI GATC 7 cut(s) 136, 205, 324, 328, 343, 368, 514
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 7 cut(s) 133, 202, 321, 325, 340, 365, 511
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 6 cut(s) 67, 368, 408, 543, 549, 558
BstNI CCWGG 1 cut(s) 261
BstSCI CCNGG 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 272
BstUI CGCG 1 cut(s) 411
BstV1I GCAGC 2 cut(s) 258, 286
BstV2I GAAGAC 1 cut(s) 445
BstX2I RGATCY 2 cut(s) 340, 365
BstXI CCANNNNNNTGG 1 cut(s) 539
BstYI RGATCY 2 cut(s) 340, 365
Bsu15I ATCGAT 2 cut(s) 246, 324
Bsu36I CCTNAGG 1 cut(s) 174
BsuRI GGCC 4 cut(s) 142, 172, 258, 305
BsuTUI ATCGAT 2 cut(s) 246, 324
BtgI CCRYGG 1 cut(s) 532
BtsCI GGATG 2 cut(s) 132, 187
BtsI GCAGTG 1 cut(s) 493
BtsIMutI CAGTG 1 cut(s) 493
Cac8I GCNNGC 2 cut(s) 554, 576
CciI TCATGA 1 cut(s) 432
CfoI GCGC 2 cut(s) 70, 189
Cfr13I GGNCC 1 cut(s) 257
ClaI ATCGAT 2 cut(s) 246, 324
CseI GACGC 2 cut(s) 266, 417
Csp6I GTAC 2 cut(s) 240, 471
CviAII CATG 1 cut(s) 433
CviQI GTAC 2 cut(s) 240, 471
DdeI CTNAG 1 cut(s) 174
DpnI GATC 7 cut(s) 135, 204, 323, 327, 342, 367, 513
DpnII GATC 7 cut(s) 133, 202, 321, 325, 340, 365, 511
EaeI YGGCCR 1 cut(s) 303
EciI GGCGGA 1 cut(s) 455
Eco130I CCWWGG 2 cut(s) 74, 517
Eco24I GRGCYC 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 329
Eco81I CCTNAGG 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 2 cut(s) 74, 517
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 2 cut(s) 74, 517
FaeI CATG 1 cut(s) 436
FaiI YATR 2 cut(s) 81, 434
FatI CATG 1 cut(s) 432
Fnu4HI GCNGC 4 cut(s) 71, 272, 275, 544
FokI GGATG 2 cut(s) 139, 194
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 4 cut(s) 71, 272, 275, 544
GlaI GCGC 2 cut(s) 69, 188
GluI GCNGC 4 cut(s) 71, 272, 275, 544
GsuI CTGGAG 1 cut(s) 501
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 4 cut(s) 142, 172, 258, 305
HapII CCGG 1 cut(s) 291
HgaI GACGC 2 cut(s) 266, 417
HhaI GCGC 2 cut(s) 70, 189
Hin1II CATG 1 cut(s) 436
Hin6I GCGC 2 cut(s) 68, 187
HinP1I GCGC 2 cut(s) 68, 187
HindIII AAGCTT 1 cut(s) 331
HinfI GANTC 2 cut(s) 377, 506
HpaII CCGG 1 cut(s) 291
HphI GGTGA 1 cut(s) 239
Hpy188I TCNGA 4 cut(s) 65, 138, 223, 511
Hpy188III TCNNGA 2 cut(s) 433, 480
Hpy99I CGWCG 3 cut(s) 227, 282, 411
HpyAV CCTTC 2 cut(s) 228, 430
HpyCH4III ACNGT 2 cut(s) 100, 227
HpyCH4V TGCA 2 cut(s) 274, 556
HpyF10VI GCNNNNNNNGC 6 cut(s) 67, 368, 408, 543, 549, 558
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 1 cut(s) 436
HspAI GCGC 2 cut(s) 68, 187
Kzo9I GATC 7 cut(s) 133, 202, 321, 325, 340, 365, 511
LmnI GCTCC 2 cut(s) 65, 90
Lsp1109I GCAGC 2 cut(s) 258, 286
LweI GCATC 2 cut(s) 198, 349
MaeIII GTNAC 4 cut(s) 94, 488, 526, 563
MalI GATC 7 cut(s) 135, 204, 323, 327, 342, 367, 513
MboI GATC 7 cut(s) 133, 202, 321, 325, 340, 365, 511
MboII GAAGA 2 cut(s) 335, 445
MflI RGATCY 2 cut(s) 340, 365
MhlI GDGCHC 1 cut(s) 87
MlsI TGGCCA 1 cut(s) 305
MluCI AATT 1 cut(s) 582
MluNI TGGCCA 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 5 cut(s) 100, 132, 331, 458, 476
Mox20I TGGCCA 1 cut(s) 305
MscI TGGCCA 1 cut(s) 305
MseI TTAA 1 cut(s) 586
MslI CAYNNNNRTG 2 cut(s) 537, 561
Msp20I TGGCCA 1 cut(s) 305
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
MvnI CGCG 1 cut(s) 411
MwoI GCNNNNNNNGC 6 cut(s) 67, 368, 408, 543, 549, 558
NdeII GATC 7 cut(s) 133, 202, 321, 325, 340, 365, 511
NlaIII CATG 1 cut(s) 436
NlaIV GGNNCC 1 cut(s) 86
NmuCI GTSAC 3 cut(s) 488, 526, 563
OliI CACNNNNGTG 2 cut(s) 537, 561
PagI TCATGA 1 cut(s) 432
PfeI GAWTC 2 cut(s) 377, 506
PkrI GCNGC 4 cut(s) 72, 273, 276, 545
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 257
PstI CTGCAG 1 cut(s) 276
PsuI RGATCY 2 cut(s) 340, 365
RsaI GTAC 2 cut(s) 241, 472
RsaNI GTAC 2 cut(s) 240, 471
RseI CAYNNNNRTG 2 cut(s) 537, 561
SaqAI TTAA 1 cut(s) 586
SatI GCNGC 4 cut(s) 71, 272, 275, 544
Sau3AI GATC 7 cut(s) 133, 202, 321, 325, 340, 365, 511
Sau96I GGNCC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 1 cut(s) 87
SetI ASST 6 cut(s) 25, 180, 335, 351, 469, 554
SfaNI GCATC 2 cut(s) 198, 349
SfcI CTRYAG 1 cut(s) 272
SmiMI CAYNNNNRTG 2 cut(s) 537, 561
Sse9I AATT 1 cut(s) 582
SsiI CCGC 6 cut(s) 71, 411, 440, 537, 543, 578
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 2 cut(s) 74, 517
TaaI ACNGT 2 cut(s) 100, 227
TaqI TCGA 3 cut(s) 246, 324, 456
TaqII GACCGA 1 cut(s) 420
TasI AATT 1 cut(s) 582
TatI WGTACW 1 cut(s) 239
TauI GCSGC 2 cut(s) 73, 546
TfiI GAWTC 2 cut(s) 377, 506
Tru1I TTAA 1 cut(s) 586
Tru9I TTAA 1 cut(s) 586
TscAI CASTG 1 cut(s) 493
TseFI GTSAC 3 cut(s) 488, 526, 563
TseI GCWGC 2 cut(s) 271, 274
Tsp45I GTSAC 3 cut(s) 488, 526, 563
TspDTI ATGAA 2 cut(s) 421, 449
TspGWI ACGGA 1 cut(s) 582
TspRI CASTG 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.