Rroxscaffold_6G00410030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001047
Physical Location & Seq
Reverse (-)
32498533 .. 32498757
225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00410030.1

Sequence Viewer

Length: 225 bp
ATGGGGATGGAGGTTTCCGGGGACGACGGTGTTCCTACTTGGGCTTTCCGGGCTGGTGATCAATCCGGGGATGGGGATGCTCAACGTGGTGGCTATTTAGGCTACGCCGGTGATGGACCGAAGGAAGTCCATAGGGGCGGTGGTGTTTTTTCCGGCGACGGCGACGGCGACATGCAACTTGGTAGCGGCTATGTTGTGGAGCAGGCGTTGGCTAGGGTTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

7.48

Weight (kDa)

4.17

Isoelectric Point (pI)

18.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 138, 186
AfiI CCNNNNNNNGG 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 116
AsuC2I CCSGG 3 cut(s) 19, 50, 67
AsuHPI GGTGA 2 cut(s) 68, 122
AvaII GGWCC 1 cut(s) 116
BccI CCATC 2 cut(s) 65, 107
BceAI ACGGC 2 cut(s) 175, 181
BclI TGATCA 1 cut(s) 58
BcnI CCSGG 3 cut(s) 19, 50, 67
BfaI CTAG 1 cut(s) 213
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
Bme1390I CCNGG 3 cut(s) 19, 50, 67
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmrFI CCNGG 3 cut(s) 19, 50, 67
BmsI GCATC 1 cut(s) 67
BpuMI CCSGG 3 cut(s) 19, 50, 67
BsaJI CCNNGG 2 cut(s) 18, 66
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse118I RCCGGY 1 cut(s) 107
BseDI CCNNGG 2 cut(s) 18, 66
BseGI GGATG 3 cut(s) 12, 76, 82
BseLI CCNNNNNNNGG 1 cut(s) 72
BsiSI CCGG 5 cut(s) 18, 49, 66, 108, 153
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 58
BspACI CCGC 2 cut(s) 138, 186
BsrFI RCCGGY 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 18, 66
BssMI GATC 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 204
BstF5I GGATG 3 cut(s) 12, 76, 82
BstKTI GATC 1 cut(s) 61
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 2 cut(s) 50, 99
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 3 cut(s) 17, 48, 65
BtsCI GGATG 3 cut(s) 12, 76, 82
Cac8I GCNNGC 1 cut(s) 204
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 116
CviAII CATG 1 cut(s) 172
CviJI RGCY 6 cut(s) 44, 53, 93, 102, 189, 212
CviKI_1 RGCY 6 cut(s) 44, 53, 93, 102, 189, 212
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 116
FaeI CATG 1 cut(s) 175
FaiI YATR 3 cut(s) 132, 173, 192
FaqI GGGAC 1 cut(s) 35
FatI CATG 1 cut(s) 171
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 187
FokI GGATG 3 cut(s) 19, 83, 89
Fsp4HI GCNGC 1 cut(s) 187
FspBI CTAG 1 cut(s) 213
GluI GCNGC 1 cut(s) 187
HapII CCGG 5 cut(s) 18, 49, 66, 108, 153
Hin1II CATG 1 cut(s) 175
HpaII CCGG 5 cut(s) 18, 49, 66, 108, 153
HphI GGTGA 2 cut(s) 68, 122
Hpy99I CGWCG 3 cut(s) 29, 161, 167
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 99
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 7 cut(s) 31, 39, 62, 79, 121, 166, 188
LweI GCATC 1 cut(s) 67
MaeI CTAG 1 cut(s) 213
MaeII ACGT 1 cut(s) 85
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MnlI CCTC 1 cut(s) 4
MspI CCGG 5 cut(s) 18, 49, 66, 108, 153
MspR9I CCNGG 3 cut(s) 19, 50, 67
MwoI GCNNNNNNNGC 2 cut(s) 50, 99
NciI CCSGG 3 cut(s) 19, 50, 67
NdeII GATC 1 cut(s) 58
NlaIII CATG 1 cut(s) 175
NspI RCATGY 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PkrI GCNGC 1 cut(s) 188
PspPI GGNCC 1 cut(s) 116
SatI GCNGC 1 cut(s) 187
Sau3AI GATC 1 cut(s) 58
Sau96I GGNCC 1 cut(s) 116
ScrFI CCNGG 3 cut(s) 19, 50, 67
SetI ASST 2 cut(s) 15, 88
SfaNI GCATC 1 cut(s) 67
SgrAI CRCCGGYG 1 cut(s) 107
SinI GGWCC 1 cut(s) 116
SsiI CCGC 2 cut(s) 138, 186
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 3 cut(s) 17, 48, 65
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 1 cut(s) 88
TaqII GACCGA 1 cut(s) 133
TauI GCSGC 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 116
XceI RCATGY 1 cut(s) 175
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.