Rh7DG439100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001047
Physical Location & Seq
Forward (+)
62430007 .. 62436629
6623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG439100.1

Sequence Viewer

Length: 270 bp
ATGGCGAGTTCTAGTTCCCCCAATTCTTCTGTCCGTGTCATCAAGAAATATGCAGTGGAGGGTCTTAAGGACAAGGCCTTGAAAGAACACTTGAACATGATTCGGGACAAAGACTCCCTTCACAAATATGGGGCAAAGCTGTACAAATCTATAGCAAAATTCGCCATCTTTGATGAAGCCCTAGAGCAGCTAATTAAGGTTCACTCTGAGCCGCCCACCCGCACTATGGTCATTGGGAACAATCAAATCATGCCACTATGGACAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.07

Weight (kDa)

9.6

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 212, 220
AcsI RAATTY 1 cut(s) 158
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 226
AflII CTTAAG 1 cut(s) 65
AgsI TTSAA 2 cut(s) 82, 94
AluBI AGCT 2 cut(s) 139, 190
AluI AGCT 2 cut(s) 139, 190
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 187
ApoI RAATTY 1 cut(s) 158
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 173
BfaI CTAG 2 cut(s) 12, 182
BfmI CTRYAG 1 cut(s) 150
BfrI CTTAAG 1 cut(s) 65
BisI GCNGC 2 cut(s) 188, 212
BlsI GCNGC 2 cut(s) 189, 213
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 1 cut(s) 77
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 77
Bsp1407I TGTACA 1 cut(s) 141
BspACI CCGC 2 cut(s) 212, 220
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 199
BspTI CTTAAG 1 cut(s) 65
BsrGI TGTACA 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 65
BstAUI TGTACA 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 207
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 199
BsuRI GGCC 1 cut(s) 77
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
Csp6I GTAC 1 cut(s) 142
CviAII CATG 2 cut(s) 97, 250
CviJI RGCY 5 cut(s) 77, 139, 179, 190, 211
CviKI_1 RGCY 5 cut(s) 77, 139, 179, 190, 211
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 1 cut(s) 207
Eco147I AGGCCT 1 cut(s) 77
FaeI CATG 2 cut(s) 100, 253
FaiI YATR 7 cut(s) 51, 98, 129, 152, 227, 251, 259
FalI AAGNNNNNCTT 2 cut(s) 102, 134
FaqI GGGAC 1 cut(s) 119
FatI CATG 2 cut(s) 96, 249
FauI CCCGC 1 cut(s) 227
Fnu4HI GCNGC 2 cut(s) 188, 212
Fsp4HI GCNGC 2 cut(s) 188, 212
FspBI CTAG 2 cut(s) 12, 182
GluI GCNGC 2 cut(s) 188, 212
HaeIII GGCC 1 cut(s) 77
Hin1II CATG 2 cut(s) 100, 253
HinfI GANTC 2 cut(s) 100, 113
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 2 cut(s) 43, 104
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 1 cut(s) 207
Hsp92II CATG 2 cut(s) 100, 253
Lsp1109I GCAGC 1 cut(s) 199
MaeI CTAG 2 cut(s) 12, 182
MboII GAAGA 1 cut(s) 18
MluCI AATT 4 cut(s) 22, 158, 192, 265
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 1 cut(s) 52
MseI TTAA 2 cut(s) 66, 195
MslI CAYNNNNRTG 1 cut(s) 126
MspCI CTTAAG 1 cut(s) 65
MwoI GCNNNNNNNGC 1 cut(s) 161
NlaIII CATG 2 cut(s) 100, 253
PceI AGGCCT 1 cut(s) 77
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 2 cut(s) 189, 213
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
RseI CAYNNNNRTG 1 cut(s) 126
SaqAI TTAA 2 cut(s) 66, 195
SatI GCNGC 2 cut(s) 188, 212
SchI GAGTC 1 cut(s) 107
SetI ASST 3 cut(s) 141, 192, 201
SfcI CTRYAG 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 4 cut(s) 22, 158, 192, 265
SseBI AGGCCT 1 cut(s) 77
SsiI CCGC 2 cut(s) 212, 220
SspMI CTAG 2 cut(s) 12, 182
StuI AGGCCT 1 cut(s) 77
TasI AATT 4 cut(s) 22, 158, 192, 265
TatI WGTACW 1 cut(s) 141
TauI GCSGC 1 cut(s) 214
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 2 cut(s) 66, 195
Tru9I TTAA 2 cut(s) 66, 195
TscAI CASTG 1 cut(s) 60
TseI GCWGC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 189
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 60
Vha464I CTTAAG 1 cut(s) 65
XapI RAATTY 1 cut(s) 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XspI CTAG 2 cut(s) 12, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.