Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001047

Physical Location & Seq

Genomic Coordinates Forward (+)

45371316 .. 45387776

Gene Structure 16461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG182100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCTTTTCACCGGCATATGCATTTTCTCAAGAGTGAAGCAACAAAGGGGGAAACTTGAAAATGATAATTCAGAAAAATTTAGTTTTGAGGATTCATTACAATATGACTTTGAAATTATAAGATCTGCGACCGATGACTTTTCTGATGCCAATAAGCTTGGACAAGGTGGATTTGGAGCTGTTTACAAGGACTGGGTGCCTTTCGATCCTGGAGATGGTACAGTGTCGTCGGCGGTGAGCTACGGTGACGCCGGCTATGGGGATGGAGGTTTCCAGGGCGACGGTGTTCCTAGTTGGGCTCTCTGGGCTGGTGATCGTTCTGGGGATGGGGATGCTCAACGTGGTGGCTATTTAGGCTATGCTGGTGATGGCCTGAAGGAGGTCAGTAGGGGGGGCGGCGTCTTTGCCGGCGACGAAGACATGCAACTTGGTAGCGGCTATGTTGTGGAGCAGCTGGCTGCTAGGGTTTCAGAAAATTTGGGCTGTTGGACTCAAGTATTGGGCTTCGTCTGGATTGGGATGCATTGGGTCCAGATGGGCTCTGAGATCCCACCGTTTTTTGGCCTTAAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0071944 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

191

Amino Acids

20.51

Weight (kDa)

4.29

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001047)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c11g0499391 RchiOBHm_Chr3g0447361 RchiOBHm_Chr7g0218341 RchiOBHm_Chr7g0226151 RchiOBHm_Chr7g0236171 RchiOBHm_Chr7g0236221
rosa_laevigata	RLG00000001100 RLG00000001939 RLG00000012810 RLG00000013102 RLG00000013301 RLG00000020513 RLG00000030019 RLG00000037087
rosa_multiflora	Rmu_sc0000570.1_g000004 Rmu_sc0010974.1_g000003 Rmu_sc0014688.1_g000003 Rmu_sc0040332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000490 Rroxscaffold_3G00225330 Rroxscaffold_3G00227720 Rroxscaffold_6G00410030 Rroxscaffold_7G00159290
rosa_rugosa	Rorug03G0036000 Rorug05G0301600 Rorug07G0294600 Rorug07G0294600 Rorug07G0294600 Rorug07G0295400 Rorug07G0295400
rosa_samantha	Rh1AG363600 Rh1BG122700 Rh1CG048900 Rh1CG366200 Rh1DG053200 Rh1DG383900 Rh2BG407500 Rh2CG090200 Rh2CG606900 Rh2DG420300 Rh2DG655300 Rh3DG114600 Rh4AG182100 Rh4CG412200 Rh4CG453300 Rh4DG240200 Rh4DG240300 Rh5AG138000 Rh5BG568100 Rh5DG205500 Rh6AG006600 Rh6AG084300 Rh6AG150400 Rh6BG073500 Rh6BG279100 Rh6CG073700 Rh6DG070600 Rh7AG101500 Rh7DG439100
rosa_wichuraiana	Rw2G020930 Rw7G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	196
AciI	CCGC	3 cut(s)	233, 396, 435
AclWI	GGATC	2 cut(s)	200, 541
AcsI	RAATTY	2 cut(s)	77, 475
AcuI	CTGAAG	1 cut(s)	395
AcyI	GRCGYC	2 cut(s)	249, 399
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	4 cut(s)	215, 258, 379, 560
AflII	CTTAAG	1 cut(s)	566
AgsI	TTSAA	2 cut(s)	59, 113
AjnI	CCWGG	2 cut(s)	208, 273
AluBI	AGCT	4 cut(s)	157, 179, 240, 454
AluI	AGCT	4 cut(s)	157, 179, 240, 454
AlwI	GGATC	2 cut(s)	200, 541
AoxI	GGCC	2 cut(s)	370, 562
ApeKI	GCWGC	2 cut(s)	451, 458
ApoI	RAATTY	2 cut(s)	77, 475
AspS9I	GGNCC	1 cut(s)	529
AsuHPI	GGTGA	4 cut(s)	247, 257, 323, 377
AvaII	GGWCC	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	2 cut(s)	301, 542
BbsI	GAAGAC	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	445, 463
BccI	CCATC	5 cut(s)	209, 257, 320, 362, 529
BciT130I	CCWGG	2 cut(s)	210, 275
BfaI	CTAG	2 cut(s)	291, 462
BfrI	CTTAAG	1 cut(s)	566
BglII	AGATCT	1 cut(s)	122
BisI	GCNGC	4 cut(s)	397, 436, 452, 459
BlsI	GCNGC	4 cut(s)	398, 437, 453, 460
Bme1390I	CCNGG	2 cut(s)	210, 275
Bme18I	GGWCC	1 cut(s)	529
BmgT120I	GGNCC	1 cut(s)	529
BmiI	GGNNCC	2 cut(s)	198, 530
BmrFI	CCNGG	2 cut(s)	210, 275
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	3 cut(s)	136, 322, 510
BmuI	ACTGGG	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	423
BpmI	CTGGAG	1 cut(s)	231
BpuEI	CTTGAG	2 cut(s)	13, 477
BsaHI	GRCGYC	2 cut(s)	249, 399
BsaJI	CCNNGG	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	4 cut(s)	215, 258, 379, 560
Bse118I	RCCGGY	3 cut(s)	11, 251, 407
Bse1I	ACTGG	1 cut(s)	197
BseBI	CCWGG	2 cut(s)	210, 275
BseDI	CCNNGG	1 cut(s)	274
BseGI	GGATG	4 cut(s)	268, 331, 337, 525
BseLI	CCNNNNNNNGG	4 cut(s)	215, 258, 379, 560
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	445, 463
Bsh1285I	CGRYCG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	372, 564
BshNI	GGYRCC	1 cut(s)	196
BsiEI	CGRYCG	1 cut(s)	132
BsiSI	CCGG	3 cut(s)	12, 252, 408
BslI	CCNNNNNNNGG	4 cut(s)	215, 258, 379, 560
BsnI	GGCC	2 cut(s)	372, 564
Bsp1286I	GDGCHC	2 cut(s)	301, 542
Bsp143I	GATC	4 cut(s)	122, 205, 313, 546
BspACI	CCGC	3 cut(s)	233, 396, 435
BspANI	GGCC	2 cut(s)	372, 564
BspCNI	CTCAG	1 cut(s)	535
BspLI	GGNNCC	2 cut(s)	198, 530
BspPI	GGATC	2 cut(s)	200, 541
BspT107I	GGYRCC	1 cut(s)	196
BspTI	CTTAAG	1 cut(s)	566
BsrFI	RCCGGY	3 cut(s)	11, 251, 407
BsrI	ACTGG	1 cut(s)	197
BssAI	RCCGGY	3 cut(s)	11, 251, 407
BssECI	CCNNGG	1 cut(s)	274
BssMI	GATC	4 cut(s)	122, 205, 313, 546
BssNI	GRCGYC	2 cut(s)	249, 399
Bst2UI	CCWGG	2 cut(s)	210, 275
Bst4CI	ACNGT	4 cut(s)	223, 245, 284, 555
BstACI	GRCGYC	2 cut(s)	249, 399
BstAFI	CTTAAG	1 cut(s)	566
BstC8I	GCNNGC	3 cut(s)	253, 409, 456
BstDEI	CTNAG	1 cut(s)	543
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	4 cut(s)	268, 331, 337, 525
BstKTI	GATC	4 cut(s)	125, 208, 316, 549
BstMBI	GATC	4 cut(s)	122, 205, 313, 546
BstMCI	CGRYCG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 354
BstNI	CCWGG	2 cut(s)	210, 275
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	2 cut(s)	208, 273
BstV1I	GCAGC	2 cut(s)	445, 463
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	2 cut(s)	122, 546
BstYI	RGATCY	2 cut(s)	122, 546
BsuRI	GGCC	2 cut(s)	372, 564
BtsCI	GGATG	4 cut(s)	268, 331, 337, 525
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	3 cut(s)	253, 409, 456
Cfr10I	RCCGGY	3 cut(s)	11, 251, 407
Cfr13I	GGNCC	1 cut(s)	529
CseI	GACGC	2 cut(s)	257, 388
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	1 cut(s)	421
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	1 cut(s)	543
DpnI	GATC	4 cut(s)	124, 207, 315, 548
DpnII	GATC	4 cut(s)	122, 205, 313, 546
Eco24I	GRGCYC	2 cut(s)	301, 542
Eco47I	GGWCC	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	395
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoRII	CCWGG	2 cut(s)	208, 273
EcoT22I	ATGCAT	2 cut(s)	23, 525
EcoT38I	GRGCYC	2 cut(s)	301, 542
FaeI	CATG	1 cut(s)	424
FaiI	YATR	8 cut(s)	17, 19, 105, 119, 258, 360, 422, 441
FatI	CATG	1 cut(s)	420
FauNDI	CATATG	1 cut(s)	17
Fnu4HI	GCNGC	4 cut(s)	397, 436, 452, 459
FokI	GGATG	4 cut(s)	275, 338, 344, 532
FriOI	GRGCYC	2 cut(s)	301, 542
Fsp4HI	GCNGC	4 cut(s)	397, 436, 452, 459
FspBI	CTAG	2 cut(s)	291, 462
GluI	GCNGC	4 cut(s)	397, 436, 452, 459
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	372, 564
HapII	CCGG	3 cut(s)	12, 252, 408
HgaI	GACGC	2 cut(s)	257, 388
Hin1I	GRCGYC	2 cut(s)	249, 399
Hin1II	CATG	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	2 cut(s)	92, 490
HpaII	CCGG	3 cut(s)	12, 252, 408
HphI	GGTGA	4 cut(s)	247, 257, 323, 377
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	4 cut(s)	73, 145, 472, 544
Hpy188III	TCNNGA	3 cut(s)	30, 511, 532
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	3 cut(s)	232, 284, 416
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	4 cut(s)	223, 245, 284, 555
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	3 cut(s)	21, 424, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 354
HpyF3I	CTNAG	1 cut(s)	543
HpySE526I	ACGT	1 cut(s)	340
Hsp92I	GRCGYC	2 cut(s)	249, 399
Hsp92II	CATG	1 cut(s)	424
KroI	GCCGGC	2 cut(s)	251, 407
KroNI	GCCGGC	2 cut(s)	253, 409
Kzo9I	GATC	4 cut(s)	122, 205, 313, 546
LmnI	GCTCC	2 cut(s)	176, 448
Lsp1109I	GCAGC	2 cut(s)	445, 463
LweI	GCATC	3 cut(s)	136, 322, 510
MaeI	CTAG	2 cut(s)	291, 462
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	4 cut(s)	124, 207, 315, 548
MboI	GATC	4 cut(s)	122, 205, 313, 546
MboII	GAAGA	1 cut(s)	428
MflI	RGATCY	2 cut(s)	122, 546
MhlI	GDGCHC	2 cut(s)	301, 542
MluCI	AATT	4 cut(s)	67, 77, 114, 475
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	467
MnlI	CCTC	3 cut(s)	82, 260, 373
Mph1103I	ATGCAT	2 cut(s)	23, 525
MroNI	GCCGGC	2 cut(s)	251, 407
MseI	TTAA	2 cut(s)	567, 574
MspA1I	CMGCKG	1 cut(s)	454
MspCI	CTTAAG	1 cut(s)	566
MspI	CCGG	3 cut(s)	12, 252, 408
MspR9I	CCNGG	2 cut(s)	210, 275
MvaI	CCWGG	2 cut(s)	210, 275
MwoI	GCNNNNNNNGC	2 cut(s)	305, 354
NaeI	GCCGGC	2 cut(s)	253, 409
NdeI	CATATG	1 cut(s)	17
NdeII	GATC	4 cut(s)	122, 205, 313, 546
NgoMIV	GCCGGC	2 cut(s)	251, 407
NlaIII	CATG	1 cut(s)	424
NlaIV	GGNNCC	2 cut(s)	198, 530
NmuCI	GTSAC	1 cut(s)	245
NsiI	ATGCAT	2 cut(s)	23, 525
NspI	RCATGY	1 cut(s)	424
PdiI	GCCGGC	2 cut(s)	253, 409
PfeI	GAWTC	1 cut(s)	92
PfoI	TCCNGGA	1 cut(s)	208
PkrI	GCNGC	4 cut(s)	398, 437, 453, 460
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PsiI	TTATAA	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	208, 273
PspGI	CCWGG	2 cut(s)	208, 273
PspN4I	GGNNCC	2 cut(s)	198, 530
PspPI	GGNCC	1 cut(s)	529
PsuI	RGATCY	2 cut(s)	122, 546
PvuII	CAGCTG	1 cut(s)	454
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	567, 574
SatI	GCNGC	4 cut(s)	397, 436, 452, 459
Sau3AI	GATC	4 cut(s)	122, 205, 313, 546
Sau96I	GGNCC	1 cut(s)	529
SchI	GAGTC	1 cut(s)	484
ScrFI	CCNGG	2 cut(s)	210, 275
SduI	GDGCHC	2 cut(s)	301, 542
SetI	ASST	8 cut(s)	159, 169, 181, 242, 271, 343, 384, 456
SfaNI	GCATC	3 cut(s)	136, 322, 510
SinI	GGWCC	1 cut(s)	529
SmlI	CTYRAG	3 cut(s)	28, 492, 566
SmoI	CTYRAG	3 cut(s)	28, 492, 566
Sse9I	AATT	4 cut(s)	67, 77, 114, 475
SsiI	CCGC	3 cut(s)	233, 396, 435
SspMI	CTAG	2 cut(s)	291, 462
StyD4I	CCNGG	2 cut(s)	208, 273
TaaI	ACNGT	4 cut(s)	223, 245, 284, 555
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	1 cut(s)	204
TaqII	GACCGA	1 cut(s)	146
TasI	AATT	4 cut(s)	67, 77, 114, 475
TauI	GCSGC	2 cut(s)	399, 438
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	2 cut(s)	567, 574
Tru9I	TTAA	2 cut(s)	567, 574
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	2 cut(s)	451, 458
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	228
Vha464I	CTTAAG	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	529
XagI	CCTNNNNNAGG	1 cut(s)	377
XapI	RAATTY	2 cut(s)	77, 475
XceI	RCATGY	1 cut(s)	424
XspI	CTAG	2 cut(s)	291, 462
Zsp2I	ATGCAT	2 cut(s)	23, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.