Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001047

Physical Location & Seq

Genomic Coordinates Reverse (-)

68633677 .. 68634081

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG453300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGGGGAGGGGAGCGGCGGGTTGGTGCCGTGTTTGATTCTTGTTTCTCGGTGGAGGAAGCTGGATCTGACTTGGCTGTTGTTGGATCAGAGGACTGCAGTGAAGGTGGGGTGGCGTTGCCGGCCTCCCTTTCTTAATTCTTCTGTTGGTGGCGTTGATGGTGCTGCACGGGGGCTATGCTTCTGGCCCTCTAACGGTAGTGGAGCTTCAGTGACTGTGGCAGTGCGGTGTTTGATTTCAGATCTCGTGCAGCCACGTACTGGGTGGTTCTCCTTGCTTGTCGGCTATGGGGATGGAGGTTTCCAGGACGACGGTGTTCCTACTTGGGCTCTCTGGGCTGGGGATCGATCTGGGGATGGGGATGCTCAACGTGGTGGCTATTTAGGCTATGCGGTGATGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.22

Weight (kDa)

7.64

Isoelectric Point (pI)

28.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001047)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c11g0499391 RchiOBHm_Chr3g0447361 RchiOBHm_Chr7g0218341 RchiOBHm_Chr7g0226151 RchiOBHm_Chr7g0236171 RchiOBHm_Chr7g0236221
rosa_laevigata	RLG00000001100 RLG00000001939 RLG00000012810 RLG00000013102 RLG00000013301 RLG00000020513 RLG00000030019 RLG00000037087
rosa_multiflora	Rmu_sc0000570.1_g000004 Rmu_sc0010974.1_g000003 Rmu_sc0014688.1_g000003 Rmu_sc0040332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000490 Rroxscaffold_3G00225330 Rroxscaffold_3G00227720 Rroxscaffold_6G00410030 Rroxscaffold_7G00159290
rosa_rugosa	Rorug03G0036000 Rorug05G0301600 Rorug07G0294600 Rorug07G0294600 Rorug07G0294600 Rorug07G0295400 Rorug07G0295400
rosa_samantha	Rh1AG363600 Rh1BG122700 Rh1CG048900 Rh1CG366200 Rh1DG053200 Rh1DG383900 Rh2BG407500 Rh2CG090200 Rh2CG606900 Rh2DG420300 Rh2DG655300 Rh3DG114600 Rh4AG182100 Rh4CG412200 Rh4CG453300 Rh4DG240200 Rh4DG240300 Rh5AG138000 Rh5BG568100 Rh5DG205500 Rh6AG006600 Rh6AG084300 Rh6AG150400 Rh6BG073500 Rh6BG279100 Rh6CG073700 Rh6DG070600 Rh7AG101500 Rh7DG439100
rosa_wichuraiana	Rw2G020930 Rw7G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccB7I	CCANNNNNTGG	1 cut(s)	260
AccBSI	CCGCTC	1 cut(s)	15
AciI	CCGC	4 cut(s)	15, 18, 226, 392
AclWI	GGATC	3 cut(s)	72, 93, 351
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	194, 260
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	2 cut(s)	61, 206
AluI	AGCT	2 cut(s)	61, 206
AlwI	GGATC	3 cut(s)	72, 93, 351
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	3 cut(s)	122, 185, 399
ApeKI	GCWGC	2 cut(s)	164, 250
AspS9I	GGNCC	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	331
BarI	GAAGNNNNNNTAC	2 cut(s)	190, 222
BauI	CACGAG	1 cut(s)	245
BbvI	GCAGC	2 cut(s)	151, 262
BccI	CCATC	4 cut(s)	152, 287, 350, 391
BceAI	ACGGC	1 cut(s)	13
BciT130I	CCWGG	1 cut(s)	305
BfmI	CTRYAG	1 cut(s)	96
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	3 cut(s)	16, 165, 251
BlsI	GCNGC	3 cut(s)	17, 166, 252
Bme1390I	CCNGG	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	305
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	352
BmuI	ACTGGG	1 cut(s)	270
Bsa29I	ATCGAT	1 cut(s)	346
BsaAI	YACGTR	1 cut(s)	257
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 260
Bse118I	RCCGGY	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	305
BseCI	ATCGAT	1 cut(s)	346
BseGI	GGATG	3 cut(s)	298, 361, 367
BseLI	CCNNNNNNNGG	2 cut(s)	194, 260
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	151, 262
BseYI	CCCAGC	1 cut(s)	338
BsgI	GTGCAG	2 cut(s)	150, 269
BshFI	GGCC	3 cut(s)	124, 187, 401
BshNI	GGYRCC	1 cut(s)	25
BshVI	ATCGAT	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	121
BslI	CCNNNNNNNGG	2 cut(s)	194, 260
BsnI	GGCC	3 cut(s)	124, 187, 401
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	5 cut(s)	64, 85, 241, 343, 347
BspACI	CCGC	4 cut(s)	15, 18, 226, 392
BspANI	GGCC	3 cut(s)	124, 187, 401
BspDI	ATCGAT	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	27
BspMAI	CTGCAG	1 cut(s)	100
BspPI	GGATC	3 cut(s)	72, 93, 351
BspT107I	GGYRCC	1 cut(s)	25
BsrBI	CCGCTC	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	120
BssMI	GATC	5 cut(s)	64, 85, 241, 343, 347
BssSI	CACGAG	1 cut(s)	245
Bst2BI	CACGAG	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	3 cut(s)	197, 217, 314
BstBAI	YACGTR	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	122
BstF5I	GGATG	3 cut(s)	298, 361, 367
BstKTI	GATC	5 cut(s)	67, 88, 244, 346, 350
BstMBI	GATC	5 cut(s)	64, 85, 241, 343, 347
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 335, 384, 398
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	151, 262
BstX2I	RGATCY	2 cut(s)	64, 241
BstYI	RGATCY	2 cut(s)	64, 241
Bsu15I	ATCGAT	1 cut(s)	346
BsuRI	GGCC	3 cut(s)	124, 187, 401
BsuTUI	ATCGAT	1 cut(s)	346
BtsCI	GGATG	3 cut(s)	298, 361, 367
BtsI	GCAGTG	2 cut(s)	105, 228
BtsIMutI	CAGTG	3 cut(s)	105, 216, 228
Cac8I	GCNNGC	1 cut(s)	122
CaiI	CAGNNNCTG	1 cut(s)	215
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	186
ClaI	ATCGAT	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	258
CviQI	GTAC	1 cut(s)	258
DpnI	GATC	5 cut(s)	66, 87, 243, 345, 349
DpnII	GATC	5 cut(s)	64, 85, 241, 343, 347
Eco24I	GRGCYC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	331
FaiI	YATR	3 cut(s)	178, 288, 390
FauI	CCCGC	1 cut(s)	11
Fnu4HI	GCNGC	3 cut(s)	16, 165, 251
FokI	GGATG	3 cut(s)	305, 368, 374
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	3 cut(s)	16, 165, 251
GluI	GCNGC	3 cut(s)	16, 165, 251
GsaI	CCCAGC	1 cut(s)	342
HaeIII	GGCC	3 cut(s)	124, 187, 401
HapII	CCGG	1 cut(s)	121
HinfI	GANTC	1 cut(s)	37
HpaII	CCGG	1 cut(s)	121
Hpy188I	TCNGA	3 cut(s)	69, 90, 241
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	3 cut(s)	197, 217, 314
HpyCH4IV	ACGT	2 cut(s)	256, 370
HpyCH4V	TGCA	3 cut(s)	98, 167, 250
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 335, 384, 398
HpySE526I	ACGT	2 cut(s)	256, 370
KroI	GCCGGC	1 cut(s)	120
KroNI	GCCGGC	1 cut(s)	122
Kzo9I	GATC	5 cut(s)	64, 85, 241, 343, 347
LmnI	GCTCC	2 cut(s)	12, 203
LpnPI	CCDG	9 cut(s)	47, 134, 169, 246, 290, 317, 319, 324, 336
Lsp1109I	GCAGC	2 cut(s)	151, 262
LweI	GCATC	1 cut(s)	352
MaeII	ACGT	2 cut(s)	256, 370
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	5 cut(s)	66, 87, 243, 345, 349
MbiI	CCGCTC	1 cut(s)	15
MboI	GATC	5 cut(s)	64, 85, 241, 343, 347
MboII	GAAGA	1 cut(s)	132
MflI	RGATCY	2 cut(s)	64, 241
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	5 cut(s)	48, 84, 135, 199, 290
MroNI	GCCGGC	1 cut(s)	120
MseI	TTAA	1 cut(s)	135
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	4 cut(s)	121, 335, 384, 398
NaeI	GCCGGC	1 cut(s)	122
NdeII	GATC	5 cut(s)	64, 85, 241, 343, 347
NgoMIV	GCCGGC	1 cut(s)	120
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	211
PdiI	GCCGGC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	37
PflMI	CCANNNNNTGG	1 cut(s)	260
PfoI	TCCNGGA	1 cut(s)	303
PkrI	GCNGC	3 cut(s)	17, 166, 252
Ppu21I	YACGTR	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	186
PstI	CTGCAG	1 cut(s)	100
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	2 cut(s)	64, 241
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	3 cut(s)	16, 165, 251
Sau3AI	GATC	5 cut(s)	64, 85, 241, 343, 347
Sau96I	GGNCC	1 cut(s)	186
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	6 cut(s)	63, 108, 208, 259, 301, 373
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	96
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	4 cut(s)	15, 18, 226, 392
StyD4I	CCNGG	1 cut(s)	303
TaaI	ACNGT	3 cut(s)	197, 217, 314
TaiI	ACGT	2 cut(s)	259, 373
TaqI	TCGA	1 cut(s)	346
TasI	AATT	1 cut(s)	136
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	3 cut(s)	105, 216, 228
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	2 cut(s)	164, 250
Tsp45I	GTSAC	1 cut(s)	211
TspRI	CASTG	3 cut(s)	105, 216, 228
Van91I	CCANNNNNTGG	1 cut(s)	260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.