Rh5AG138000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001047
Physical Location & Seq
Forward (+)
14262048 .. 14265310
3263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG138000.1

Sequence Viewer

Length: 561 bp
ATGACTGATCGGACGTCAAGCTCTCATGGCGTGGATCTGGTTTGGACTGAGTTGGATGGGCGAGTCTGGATTTTGGATCGGGGTCGTCAGATTTCAGACGGTGATAGGGATTGTACAATCGCTTTGGCTGGCCCTGGCGGTTCGCTGCAGTGTCGTGGTGTTGCCGGAGTGGGGTTGGCTCGACCAGTTCAGGGGATCGATCAAAGCTTGGAGGATCTTCAGGTTGTACTGGGCTCCTCCGATCGGGTTCATCCCGATCTAGGATCTGGTTTCTTCAATGATTGCGAAGGCACTGGAATGGATCTGAAGTTGGTTCGAGGTGATCAAGAATGGGCGCGGACTTGGGTGTCTTTCGATCCTGGATATGGTACAGTATCGTCGGTGGTGAACCACGGTGACGGCGGCTATGGGGATGGCGGTTTCAAGGGTTTCAGAGCTCCTACTTGGGCTCTATGGGCTGTAAGGGAGGCGGCGTCTTTGCCGGCGACGGCGACGGCGACATGCAACTTGGGAGCGGCCATGTTTTGGAGCAGCTGGTTGTTAGGGTTTCAGAAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

19.82

Weight (kDa)

4.8

Isoelectric Point (pI)

17.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 346
AatII GACGTC 1 cut(s) 17
AccB7I CCANNNNNTGG 1 cut(s) 525
AccBSI CCGCTC 1 cut(s) 515
AccII CGCG 1 cut(s) 337
AciI CCGC 6 cut(s) 138, 337, 402, 417, 470, 515
AclWI GGATC 7 cut(s) 42, 84, 203, 222, 271, 309, 350
AcoI YGGCCR 1 cut(s) 516
AcsI RAATTY 1 cut(s) 555
AcuI CTGAAG 2 cut(s) 203, 326
AcyI GRCGYC 2 cut(s) 14, 473
AfaI GTAC 3 cut(s) 115, 228, 370
AfiI CCNNNNNNNGG 6 cut(s) 171, 191, 243, 260, 365, 525
AgsI TTSAA 2 cut(s) 277, 424
AjnI CCWGG 2 cut(s) 133, 358
AluBI AGCT 4 cut(s) 21, 207, 437, 534
AluI AGCT 4 cut(s) 21, 207, 437, 534
Alw21I GWGCWC 1 cut(s) 439
AlwI GGATC 7 cut(s) 42, 84, 203, 222, 271, 309, 350
AoxI GGCC 2 cut(s) 130, 516
ApeKI GCWGC 2 cut(s) 145, 531
ApoI RAATTY 1 cut(s) 555
AspLEI GCGC 1 cut(s) 337
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 4 cut(s) 113, 332, 397, 407
BanII GRGCYC 3 cut(s) 236, 439, 451
Bbv12I GWGCWC 1 cut(s) 439
BbvI GCAGC 2 cut(s) 132, 543
BccI CCATC 2 cut(s) 50, 407
BceAI ACGGC 3 cut(s) 415, 504, 510
BciT130I CCWGG 2 cut(s) 135, 360
BclI TGATCA 1 cut(s) 322
BfaI CTAG 1 cut(s) 260
BfmI CTRYAG 1 cut(s) 146
BisI GCNGC 5 cut(s) 146, 403, 471, 516, 532
BlsI GCNGC 5 cut(s) 147, 404, 472, 517, 533
Bme1390I CCNGG 2 cut(s) 135, 360
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 235
BmrFI CCNGG 2 cut(s) 135, 360
BmrI ACTGGG 1 cut(s) 239
BmuI ACTGGG 1 cut(s) 239
Bsa29I ATCGAT 1 cut(s) 198
BsaHI GRCGYC 2 cut(s) 14, 473
BsaJI CCNNGG 2 cut(s) 133, 391
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 6 cut(s) 171, 191, 243, 260, 365, 525
Bse118I RCCGGY 1 cut(s) 481
Bse1I ACTGG 3 cut(s) 185, 234, 298
BseBI CCWGG 2 cut(s) 135, 360
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 2 cut(s) 133, 391
BseGI GGATG 3 cut(s) 61, 250, 418
BseLI CCNNNNNNNGG 6 cut(s) 171, 191, 243, 260, 365, 525
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 3 cut(s) 185, 234, 298
BseRI GAGGAG 1 cut(s) 226
BseXI GCAGC 2 cut(s) 132, 543
Bsh1236I CGCG 1 cut(s) 337
Bsh1285I CGRYCG 1 cut(s) 244
BshFI GGCC 2 cut(s) 132, 518
BshVI ATCGAT 1 cut(s) 198
BsiEI CGRYCG 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 439
BsiSI CCGG 2 cut(s) 165, 482
BslI CCNNNNNNNGG 6 cut(s) 171, 191, 243, 260, 365, 525
BsnI GGCC 2 cut(s) 132, 518
Bsp1286I GDGCHC 3 cut(s) 236, 439, 451
Bsp1407I TGTACA 1 cut(s) 113
BspACI CCGC 6 cut(s) 138, 337, 402, 417, 470, 515
BspANI GGCC 2 cut(s) 132, 518
BspCNI CTCAG 1 cut(s) 40
BspDI ATCGAT 1 cut(s) 198
BspFNI CGCG 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 235
BspMAI CTGCAG 1 cut(s) 150
BspPI GGATC 7 cut(s) 42, 84, 203, 222, 271, 309, 350
BsrBI CCGCTC 1 cut(s) 515
BsrFI RCCGGY 1 cut(s) 481
BsrGI TGTACA 1 cut(s) 113
BsrI ACTGG 3 cut(s) 185, 234, 298
BssAI RCCGGY 1 cut(s) 481
BssECI CCNNGG 2 cut(s) 133, 391
BssNI GRCGYC 2 cut(s) 14, 473
Bst2UI CCWGG 2 cut(s) 135, 360
Bst4CI ACNGT 3 cut(s) 101, 373, 395
BstACI GRCGYC 2 cut(s) 14, 473
BstAUI TGTACA 1 cut(s) 113
BstC8I GCNNGC 2 cut(s) 130, 483
BstDEI CTNAG 1 cut(s) 48
BstDSI CCRYGG 1 cut(s) 391
BstF5I GGATG 3 cut(s) 61, 250, 418
BstFNI CGCG 1 cut(s) 337
BstHHI GCGC 1 cut(s) 337
BstMCI CGRYCG 1 cut(s) 244
BstMWI GCNNNNNNNGC 2 cut(s) 27, 455
BstNI CCWGG 2 cut(s) 135, 360
BstNSI RCATGY 1 cut(s) 504
BstSCI CCNGG 2 cut(s) 133, 358
BstSFI CTRYAG 1 cut(s) 146
BstUI CGCG 1 cut(s) 337
BstV1I GCAGC 2 cut(s) 132, 543
BstX2I RGATCY 4 cut(s) 34, 214, 263, 301
BstYI RGATCY 4 cut(s) 34, 214, 263, 301
Bsu15I ATCGAT 1 cut(s) 198
BsuRI GGCC 2 cut(s) 132, 518
BsuTUI ATCGAT 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 391
BtsCI GGATG 3 cut(s) 61, 250, 418
BtsI GCAGTG 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 155, 291
Cac8I GCNNGC 2 cut(s) 130, 483
CfoI GCGC 1 cut(s) 337
Cfr10I RCCGGY 1 cut(s) 481
Cfr13I GGNCC 1 cut(s) 131
ClaI ATCGAT 1 cut(s) 198
CseI GACGC 1 cut(s) 462
Csp6I GTAC 3 cut(s) 114, 227, 369
CviAII CATG 3 cut(s) 26, 501, 520
CviQI GTAC 3 cut(s) 114, 227, 369
DdeI CTNAG 1 cut(s) 48
DrdI GACNNNNNNGTC 1 cut(s) 346
DseDI GACNNNNNNGTC 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 516
Ecl136II GAGCTC 1 cut(s) 437
Eco24I GRGCYC 3 cut(s) 236, 439, 451
Eco53kI GAGCTC 1 cut(s) 437
Eco57I CTGAAG 2 cut(s) 203, 326
EcoICRI GAGCTC 1 cut(s) 437
EcoRII CCWGG 2 cut(s) 133, 358
EcoT38I GRGCYC 3 cut(s) 236, 439, 451
FaeI CATG 3 cut(s) 29, 504, 523
FaiI YATR 6 cut(s) 27, 366, 408, 454, 502, 521
FatI CATG 3 cut(s) 25, 500, 519
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 5 cut(s) 146, 403, 471, 516, 532
FokI GGATG 3 cut(s) 68, 237, 425
FriOI GRGCYC 3 cut(s) 236, 439, 451
Fsp4HI GCNGC 5 cut(s) 146, 403, 471, 516, 532
FspBI CTAG 1 cut(s) 260
GlaI GCGC 1 cut(s) 336
GluI GCNGC 5 cut(s) 146, 403, 471, 516, 532
HaeIII GGCC 2 cut(s) 132, 518
HapII CCGG 2 cut(s) 165, 482
HgaI GACGC 1 cut(s) 462
HhaI GCGC 1 cut(s) 337
Hin1I GRCGYC 2 cut(s) 14, 473
Hin1II CATG 3 cut(s) 29, 504, 523
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HindIII AAGCTT 1 cut(s) 205
HinfI GANTC 1 cut(s) 63
HpaII CCGG 2 cut(s) 165, 482
HphI GGTGA 4 cut(s) 113, 332, 397, 407
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 7 cut(s) 12, 90, 97, 241, 306, 434, 552
Hpy188III TCNNGA 3 cut(s) 67, 254, 326
Hpy8I GTNNAC 1 cut(s) 388
Hpy99I CGWCG 3 cut(s) 382, 490, 496
HpyAV CCTTC 1 cut(s) 281
HpyCH4III ACNGT 3 cut(s) 101, 373, 395
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 2 cut(s) 148, 504
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 455
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 14
Hsp92I GRCGYC 2 cut(s) 14, 473
Hsp92II CATG 3 cut(s) 29, 504, 523
HspAI GCGC 1 cut(s) 335
KroI GCCGGC 1 cut(s) 481
KroNI GCCGGC 1 cut(s) 483
Ksp22I TGATCA 1 cut(s) 322
LmnI GCTCC 4 cut(s) 239, 442, 512, 528
Lsp1109I GCAGC 2 cut(s) 132, 543
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 395
MbiI CCGCTC 1 cut(s) 515
MboII GAAGA 2 cut(s) 209, 265
MflI RGATCY 4 cut(s) 34, 214, 263, 301
MhlI GDGCHC 3 cut(s) 236, 439, 451
MluCI AATT 1 cut(s) 555
MlyI GAGTC 1 cut(s) 72
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 4 cut(s) 205, 247, 311, 460
MroNI GCCGGC 1 cut(s) 481
MslI CAYNNNNRTG 1 cut(s) 296
MspA1I CMGCKG 1 cut(s) 534
MspI CCGG 2 cut(s) 165, 482
MspR9I CCNGG 2 cut(s) 135, 360
MvaI CCWGG 2 cut(s) 135, 360
MvnI CGCG 1 cut(s) 337
MwoI GCNNNNNNNGC 2 cut(s) 27, 455
NaeI GCCGGC 1 cut(s) 483
NgoMIV GCCGGC 1 cut(s) 481
NlaIII CATG 3 cut(s) 29, 504, 523
NlaIV GGNNCC 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 395
NspI RCATGY 1 cut(s) 504
PcsI WCGNNNNNNNCGW 1 cut(s) 494
PdiI GCCGGC 1 cut(s) 483
PflMI CCANNNNNTGG 1 cut(s) 525
PfoI TCCNGGA 1 cut(s) 358
PkrI GCNGC 5 cut(s) 147, 404, 472, 517, 533
Ple19I CGATCG 1 cut(s) 244
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 439
Psp6I CCWGG 2 cut(s) 133, 358
PspGI CCWGG 2 cut(s) 133, 358
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 131
PstI CTGCAG 1 cut(s) 150
PsuI RGATCY 4 cut(s) 34, 214, 263, 301
PvuI CGATCG 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 534
RsaI GTAC 3 cut(s) 115, 228, 370
RsaNI GTAC 3 cut(s) 114, 227, 369
RseI CAYNNNNRTG 1 cut(s) 296
SacI GAGCTC 1 cut(s) 439
SatI GCNGC 5 cut(s) 146, 403, 471, 516, 532
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 1 cut(s) 72
ScrFI CCNGG 2 cut(s) 135, 360
SduI GDGCHC 3 cut(s) 236, 439, 451
SetI ASST 7 cut(s) 17, 23, 209, 225, 322, 439, 536
SfcI CTRYAG 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 296
Sse9I AATT 1 cut(s) 555
SsiI CCGC 6 cut(s) 138, 337, 402, 417, 470, 515
SspMI CTAG 1 cut(s) 260
SstI GAGCTC 1 cut(s) 439
StyD4I CCNGG 2 cut(s) 133, 358
TaaI ACNGT 3 cut(s) 101, 373, 395
TaiI ACGT 1 cut(s) 17
TaqI TCGA 4 cut(s) 181, 198, 316, 354
TasI AATT 1 cut(s) 555
TatI WGTACW 2 cut(s) 113, 226
TauI GCSGC 3 cut(s) 405, 473, 518
TscAI CASTG 2 cut(s) 155, 298
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 2 cut(s) 145, 531
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 1 cut(s) 239
TspRI CASTG 2 cut(s) 155, 298
Van91I CCANNNNNTGG 1 cut(s) 525
XapI RAATTY 1 cut(s) 555
XceI RCATGY 1 cut(s) 504
XspI CTAG 1 cut(s) 260
ZraI GACGTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.