RchiOBHm_Chr7g0226151

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001047
Physical Location & Seq
Reverse (-)
49221552 .. 49222681
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20255

Sequence Viewer

Length: 813 bp
ATGGTCATGGCTATTGCTCGTCTGGTAGCTAATCATTTCCTTCTTGTTTTTGCTTTTGTTTTCTTGCTCGGAGCGCCGCCTTGGTGTGGGCTCCCTGTGGTTATTGATTGGGAGGGTAGTGTTGTTGTTTGGATGACTGATCGGAGGCCAAGCTCTAACGGCGTGGATCTGGTTTGGACTGAGTTGGATGGGCGAGTCTGGGTTTTGGATCGGGGTCGTCAGATTTCCGACGGTGATAGGGATTGTCCAATTGCTTTAGTTGGCCTTGGTGGTTCGCTGCAGCGTCGTGGTGTTGCCGGAGTGGGGTTGGCCCGACCAGTTCAGGGGATCGATCAAAGCTTGGAGGATCTTCAGGATTGGGCGCGGACTTGGGTGTCCTTCGATCCTGGAGATGGTACAGTATCGTCGGCGGTGAACCACGGTGACGGTGGCTATGGGGATGGCGGTTTCCAGGGCGACGGAGCTCCTACTTGGGCTCTATGGGCTAGTGATTGTTCTGGGGATGGGGATGCTCAACCTGGTGGCTTTTTTGGCTATGCTGGTGATGGCCTGAAGGTGATCAGTAGGGGAGGCGGCGTCTTTGCCTGCGACGGCGACGGCGACGACGACATGCAACTTGGGAGCGGCCATGTTGTGGTGCAGCTGGTTGTTAGGGTTTCAGAAAATTTGGGCTGTTGGGCTCAAGTATTGGGCTTAGTCTGGATTGGGATGCATTGGGGCCATATGGGCTCTGAGGATTTTTTGAGATTTTATTCTTCTAGAATAGGGTTTCATGAGGTTCTAAGGAACGATTGCTTTCTGTCGACCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

28.92

Weight (kDa)

4.49

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 373
AccB7I CCANNNNNTGG 1 cut(s) 634
AccBSI CCGCTC 1 cut(s) 624
AccI GTMKAC 1 cut(s) 803
AccII CGCG 1 cut(s) 364
AciI CCGC 6 cut(s) 77, 364, 410, 444, 573, 624
AclWI GGATC 5 cut(s) 174, 216, 335, 354, 377
AcoI YGGCCR 1 cut(s) 625
AcsI RAATTY 1 cut(s) 664
AcuI CTGAAG 2 cut(s) 335, 572
AcyI GRCGYC 1 cut(s) 576
AfaI GTAC 1 cut(s) 397
AfiI CCNNNNNNNGG 5 cut(s) 86, 303, 323, 392, 634
AjnI CCWGG 3 cut(s) 385, 450, 517
AluBI AGCT 5 cut(s) 29, 153, 339, 464, 643
AluI AGCT 5 cut(s) 29, 153, 339, 464, 643
Alw21I GWGCWC 1 cut(s) 466
AlwI GGATC 5 cut(s) 174, 216, 335, 354, 377
AoxI GGCC 6 cut(s) 146, 262, 309, 547, 625, 718
ApeKI GCWGC 3 cut(s) 277, 280, 640
ApoI RAATTY 1 cut(s) 664
AspLEI GCGC 2 cut(s) 76, 364
AspS9I GGNCC 2 cut(s) 310, 718
AsuHPI GGTGA 5 cut(s) 245, 424, 434, 554, 568
BanII GRGCYC 5 cut(s) 93, 466, 478, 682, 731
Bbv12I GWGCWC 1 cut(s) 466
BbvI GCAGC 3 cut(s) 264, 292, 652
BccI CCATC 5 cut(s) 182, 386, 434, 497, 539
BceAI ACGGC 3 cut(s) 175, 607, 613
BciT130I CCWGG 3 cut(s) 387, 452, 519
BclI TGATCA 1 cut(s) 558
BfaI CTAG 2 cut(s) 486, 759
BfmI CTRYAG 1 cut(s) 278
BfoI RGCGCY 1 cut(s) 77
BglI GCCNNNNNGGC 1 cut(s) 726
BisI GCNGC 6 cut(s) 77, 278, 281, 574, 625, 641
BlsI GCNGC 6 cut(s) 78, 279, 282, 575, 626, 642
Bme1390I CCNGG 3 cut(s) 387, 452, 519
BmgT120I GGNCC 2 cut(s) 310, 718
BmiI GGNNCC 2 cut(s) 92, 719
BmrFI CCNGG 3 cut(s) 387, 452, 519
BmsI GCATC 2 cut(s) 499, 699
BpmI CTGGAG 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 666
Bsa29I ATCGAT 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 576
BsaJI CCNNGG 4 cut(s) 80, 265, 418, 451
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 5 cut(s) 86, 303, 323, 392, 634
Bse1I ACTGG 1 cut(s) 317
BseBI CCWGG 3 cut(s) 387, 452, 519
BseCI ATCGAT 1 cut(s) 330
BseDI CCNNGG 4 cut(s) 80, 265, 418, 451
BseGI GGATG 6 cut(s) 138, 193, 445, 508, 514, 714
BseLI CCNNNNNNNGG 5 cut(s) 86, 303, 323, 392, 634
BseMII CTCAG 2 cut(s) 171, 723
BseNI ACTGG 1 cut(s) 317
BseXI GCAGC 3 cut(s) 264, 292, 652
BsgI GTGCAG 1 cut(s) 659
Bsh1236I CGCG 1 cut(s) 364
BshFI GGCC 6 cut(s) 148, 264, 311, 549, 627, 720
BshVI ATCGAT 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 466
BsiSI CCGG 1 cut(s) 297
BslI CCNNNNNNNGG 5 cut(s) 86, 303, 323, 392, 634
BsnI GGCC 6 cut(s) 148, 264, 311, 549, 627, 720
Bsp1286I GDGCHC 5 cut(s) 93, 466, 478, 682, 731
Bsp143I GATC 8 cut(s) 139, 166, 208, 327, 331, 346, 382, 558
BspACI CCGC 6 cut(s) 77, 364, 410, 444, 573, 624
BspANI GGCC 6 cut(s) 148, 264, 311, 549, 627, 720
BspCNI CTCAG 2 cut(s) 172, 724
BspDI ATCGAT 1 cut(s) 330
BspFNI CGCG 1 cut(s) 364
BspHI TCATGA 1 cut(s) 772
BspLI GGNNCC 2 cut(s) 92, 719
BspMAI CTGCAG 1 cut(s) 282
BspPI GGATC 5 cut(s) 174, 216, 335, 354, 377
BsrBI CCGCTC 1 cut(s) 624
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 4 cut(s) 80, 265, 418, 451
BssMI GATC 8 cut(s) 139, 166, 208, 327, 331, 346, 382, 558
BssNI GRCGYC 1 cut(s) 576
BssT1I CCWWGG 2 cut(s) 80, 265
Bst2UI CCWGG 3 cut(s) 387, 452, 519
Bst4CI ACNGT 4 cut(s) 233, 400, 422, 428
BstACI GRCGYC 1 cut(s) 576
BstC8I GCNNGC 1 cut(s) 586
BstDEI CTNAG 4 cut(s) 180, 694, 732, 782
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 6 cut(s) 138, 193, 445, 508, 514, 714
BstFNI CGCG 1 cut(s) 364
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 2 cut(s) 76, 364
BstKTI GATC 8 cut(s) 142, 169, 211, 330, 334, 349, 385, 561
BstMBI GATC 8 cut(s) 139, 166, 208, 327, 331, 346, 382, 558
BstMWI GCNNNNNNNGC 5 cut(s) 73, 159, 482, 531, 726
BstNI CCWGG 3 cut(s) 387, 452, 519
BstNSI RCATGY 1 cut(s) 613
BstSCI CCNGG 3 cut(s) 385, 450, 517
BstSFI CTRYAG 1 cut(s) 278
BstUI CGCG 1 cut(s) 364
BstV1I GCAGC 3 cut(s) 264, 292, 652
BstX2I RGATCY 2 cut(s) 166, 346
BstYI RGATCY 2 cut(s) 166, 346
Bsu15I ATCGAT 1 cut(s) 330
BsuRI GGCC 6 cut(s) 148, 264, 311, 549, 627, 720
BsuTUI ATCGAT 1 cut(s) 330
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 6 cut(s) 138, 193, 445, 508, 514, 714
Cac8I GCNNGC 1 cut(s) 586
CciI TCATGA 1 cut(s) 772
CfoI GCGC 2 cut(s) 76, 364
Cfr13I GGNCC 2 cut(s) 310, 718
ClaI ATCGAT 1 cut(s) 330
CseI GACGC 2 cut(s) 272, 565
CsiI ACCWGGT 1 cut(s) 517
Csp6I GTAC 1 cut(s) 396
CviAII CATG 4 cut(s) 7, 610, 629, 773
CviQI GTAC 1 cut(s) 396
DdeI CTNAG 4 cut(s) 180, 694, 732, 782
DpnI GATC 8 cut(s) 141, 168, 210, 329, 333, 348, 384, 560
DpnII GATC 8 cut(s) 139, 166, 208, 327, 331, 346, 382, 558
DrdI GACNNNNNNGTC 1 cut(s) 373
DseDI GACNNNNNNGTC 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 625
Ecl136II GAGCTC 1 cut(s) 464
Eco130I CCWWGG 2 cut(s) 80, 265
Eco24I GRGCYC 5 cut(s) 93, 466, 478, 682, 731
Eco53kI GAGCTC 1 cut(s) 464
Eco57I CTGAAG 2 cut(s) 335, 572
EcoICRI GAGCTC 1 cut(s) 464
EcoRII CCWGG 3 cut(s) 385, 450, 517
EcoT14I CCWWGG 2 cut(s) 80, 265
EcoT22I ATGCAT 1 cut(s) 714
EcoT38I GRGCYC 5 cut(s) 93, 466, 478, 682, 731
ErhI CCWWGG 2 cut(s) 80, 265
FaeI CATG 4 cut(s) 10, 613, 632, 776
FatI CATG 4 cut(s) 6, 609, 628, 772
FauNDI CATATG 1 cut(s) 723
FbaI TGATCA 1 cut(s) 558
FblI GTMKAC 1 cut(s) 803
Fnu4HI GCNGC 6 cut(s) 77, 278, 281, 574, 625, 641
FokI GGATG 6 cut(s) 145, 200, 452, 515, 521, 721
FriOI GRGCYC 5 cut(s) 93, 466, 478, 682, 731
Fsp4HI GCNGC 6 cut(s) 77, 278, 281, 574, 625, 641
FspBI CTAG 2 cut(s) 486, 759
GlaI GCGC 2 cut(s) 75, 363
GluI GCNGC 6 cut(s) 77, 278, 281, 574, 625, 641
GsuI CTGGAG 1 cut(s) 408
HaeII RGCGCY 1 cut(s) 77
HaeIII GGCC 6 cut(s) 148, 264, 311, 549, 627, 720
HapII CCGG 1 cut(s) 297
HgaI GACGC 2 cut(s) 272, 565
HhaI GCGC 2 cut(s) 76, 364
Hin1I GRCGYC 1 cut(s) 576
Hin1II CATG 4 cut(s) 10, 613, 632, 776
Hin6I GCGC 2 cut(s) 74, 362
HinP1I GCGC 2 cut(s) 74, 362
HincII GTYRAC 1 cut(s) 804
HindII GTYRAC 1 cut(s) 804
HindIII AAGCTT 1 cut(s) 337
HinfI GANTC 1 cut(s) 195
HpaII CCGG 1 cut(s) 297
HphI GGTGA 5 cut(s) 245, 424, 434, 554, 568
Hpy166II GTNNAC 2 cut(s) 415, 804
Hpy188I TCNGA 6 cut(s) 71, 144, 222, 229, 661, 733
Hpy188III TCNNGA 4 cut(s) 353, 700, 759, 773
Hpy8I GTNNAC 2 cut(s) 415, 804
Hpy99I CGWCG 8 cut(s) 233, 288, 409, 461, 593, 599, 605, 608
HpyAV CCTTC 3 cut(s) 50, 388, 547
HpyCH4III ACNGT 4 cut(s) 233, 400, 422, 428
HpyCH4V TGCA 4 cut(s) 280, 613, 640, 712
HpyF10VI GCNNNNNNNGC 5 cut(s) 73, 159, 482, 531, 726
HpyF3I CTNAG 4 cut(s) 180, 694, 732, 782
Hsp92I GRCGYC 1 cut(s) 576
Hsp92II CATG 4 cut(s) 10, 613, 632, 776
HspAI GCGC 2 cut(s) 74, 362
Ksp22I TGATCA 1 cut(s) 558
Kzo9I GATC 8 cut(s) 139, 166, 208, 327, 331, 346, 382, 558
LmnI GCTCC 5 cut(s) 71, 96, 461, 469, 621
Lsp1109I GCAGC 3 cut(s) 264, 292, 652
LweI GCATC 2 cut(s) 499, 699
MabI ACCWGGT 1 cut(s) 517
MaeI CTAG 2 cut(s) 486, 759
MaeIII GTNAC 1 cut(s) 422
MalI GATC 8 cut(s) 141, 168, 210, 329, 333, 348, 384, 560
MbiI CCGCTC 1 cut(s) 624
MboI GATC 8 cut(s) 139, 166, 208, 327, 331, 346, 382, 558
MboII GAAGA 2 cut(s) 341, 747
MfeI CAATTG 1 cut(s) 249
MflI RGATCY 2 cut(s) 166, 346
MhlI GDGCHC 5 cut(s) 93, 466, 478, 682, 731
MluCI AATT 2 cut(s) 249, 664
MlyI GAGTC 1 cut(s) 204
MmeI TCCRAC 2 cut(s) 165, 252
MnlI CCTC 6 cut(s) 106, 138, 337, 563, 727, 769
Mph1103I ATGCAT 1 cut(s) 714
MspA1I CMGCKG 1 cut(s) 643
MspI CCGG 1 cut(s) 297
MspR9I CCNGG 3 cut(s) 387, 452, 519
MunI CAATTG 1 cut(s) 249
MvaI CCWGG 3 cut(s) 387, 452, 519
MvnI CGCG 1 cut(s) 364
MwoI GCNNNNNNNGC 5 cut(s) 73, 159, 482, 531, 726
NdeI CATATG 1 cut(s) 723
NdeII GATC 8 cut(s) 139, 166, 208, 327, 331, 346, 382, 558
NlaIII CATG 4 cut(s) 10, 613, 632, 776
NlaIV GGNNCC 2 cut(s) 92, 719
NmuCI GTSAC 1 cut(s) 422
NsiI ATGCAT 1 cut(s) 714
NspI RCATGY 1 cut(s) 613
PagI TCATGA 1 cut(s) 772
PcsI WCGNNNNNNNCGW 2 cut(s) 597, 603
PflMI CCANNNNNTGG 1 cut(s) 634
PfoI TCCNGGA 1 cut(s) 385
PkrI GCNGC 6 cut(s) 78, 279, 282, 575, 626, 642
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
Psp124BI GAGCTC 1 cut(s) 466
Psp6I CCWGG 3 cut(s) 385, 450, 517
PspGI CCWGG 3 cut(s) 385, 450, 517
PspN4I GGNNCC 2 cut(s) 92, 719
PspPI GGNCC 2 cut(s) 310, 718
PstI CTGCAG 1 cut(s) 282
PsuI RGATCY 2 cut(s) 166, 346
PvuII CAGCTG 1 cut(s) 643
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
SacI GAGCTC 1 cut(s) 466
SalI GTCGAC 1 cut(s) 802
SatI GCNGC 6 cut(s) 77, 278, 281, 574, 625, 641
Sau3AI GATC 8 cut(s) 139, 166, 208, 327, 331, 346, 382, 558
Sau96I GGNCC 2 cut(s) 310, 718
SchI GAGTC 1 cut(s) 204
ScrFI CCNGG 3 cut(s) 387, 452, 519
SduI GDGCHC 5 cut(s) 93, 466, 478, 682, 731
SetI ASST 8 cut(s) 31, 155, 341, 466, 520, 558, 645, 780
SexAI ACCWGGT 1 cut(s) 517
SfaNI GCATC 2 cut(s) 499, 699
SfcI CTRYAG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 681
SmoI CTYRAG 1 cut(s) 681
Sse9I AATT 2 cut(s) 249, 664
SsiI CCGC 6 cut(s) 77, 364, 410, 444, 573, 624
SspMI CTAG 2 cut(s) 486, 759
SstI GAGCTC 1 cut(s) 466
StyD4I CCNGG 3 cut(s) 385, 450, 517
StyI CCWWGG 2 cut(s) 80, 265
TaaI ACNGT 4 cut(s) 233, 400, 422, 428
TaqI TCGA 3 cut(s) 330, 381, 803
TasI AATT 2 cut(s) 249, 664
TauI GCSGC 3 cut(s) 79, 576, 627
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 3 cut(s) 277, 280, 640
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 1 cut(s) 761
TspGWI ACGGA 1 cut(s) 474
Van91I CCANNNNNTGG 1 cut(s) 634
XapI RAATTY 1 cut(s) 664
XbaI TCTAGA 1 cut(s) 758
XceI RCATGY 1 cut(s) 613
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 803
XspI CTAG 2 cut(s) 486, 759
Zsp2I ATGCAT 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.