Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001047

Physical Location & Seq

Genomic Coordinates Forward (+)

60981419 .. 60981742

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG420300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTGCTTGGAGGATGTTCAGGTTGTCCTGGGCGCCTTCAATCGGGTTCATCCTGATCTAGGATCTGGTTTCTTCAATGCTTGCGACGGCACCGGGATGGATCTGAAGTTGATTCGAGGTAATAAGGAATGGGAGCAGCTTTGGGTGTCTTTCGATCATGGAGATGGTACAGTATCGTTGGCGGTGAAGCACGGTGACGGCGGCTATGGGGATGGAGGTTTCCAGGGCAACGGTGCTCCTACTTGGGCTCTCTGGGCTGGTGATCGTTCTGGGGATGGGATGCTCAACATGGTGGCTTTTTTGGCTATGCTGGTGGTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.35

Weight (kDa)

4.51

Isoelectric Point (pI)

15.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001047)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c11g0499391 RchiOBHm_Chr3g0447361 RchiOBHm_Chr7g0218341 RchiOBHm_Chr7g0226151 RchiOBHm_Chr7g0236171 RchiOBHm_Chr7g0236221
rosa_laevigata	RLG00000001100 RLG00000001939 RLG00000012810 RLG00000013102 RLG00000013301 RLG00000020513 RLG00000030019 RLG00000037087
rosa_multiflora	Rmu_sc0000570.1_g000004 Rmu_sc0010974.1_g000003 Rmu_sc0014688.1_g000003 Rmu_sc0040332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000490 Rroxscaffold_3G00225330 Rroxscaffold_3G00227720 Rroxscaffold_6G00410030 Rroxscaffold_7G00159290
rosa_rugosa	Rorug03G0036000 Rorug05G0301600 Rorug07G0294600 Rorug07G0294600 Rorug07G0294600 Rorug07G0295400 Rorug07G0295400
rosa_samantha	Rh1AG363600 Rh1BG122700 Rh1CG048900 Rh1CG366200 Rh1DG053200 Rh1DG383900 Rh2BG407500 Rh2CG090200 Rh2CG606900 Rh2DG420300 Rh2DG655300 Rh3DG114600 Rh4AG182100 Rh4CG412200 Rh4CG453300 Rh4DG240200 Rh4DG240300 Rh5AG138000 Rh5BG568100 Rh5DG205500 Rh6AG006600 Rh6AG084300 Rh6AG150400 Rh6BG073500 Rh6BG279100 Rh6CG073700 Rh6DG070600 Rh7AG101500 Rh7DG439100
rosa_wichuraiana	Rw2G020930 Rw7G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	32, 89
AciI	CCGC	2 cut(s)	182, 201
AclWI	GGATC	2 cut(s)	70, 108
AcuI	CTGAAG	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	2 cut(s)	42, 59
AgsI	TTSAA	2 cut(s)	40, 76
AjnI	CCWGG	2 cut(s)	27, 222
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw21I	GWGCWC	1 cut(s)	238
AlwI	GGATC	2 cut(s)	70, 108
AoxI	GGCC	1 cut(s)	318
ApeKI	GCWGC	1 cut(s)	136
AspLEI	GCGC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	3 cut(s)	196, 206, 272
BanI	GGYRCC	2 cut(s)	32, 89
BanII	GRGCYC	1 cut(s)	250
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	4 cut(s)	91, 158, 206, 269
BceAI	ACGGC	2 cut(s)	103, 214
BciT130I	CCWGG	2 cut(s)	29, 224
BcnI	CCSGG	1 cut(s)	94
BfaI	CTAG	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	36
BisI	GCNGC	2 cut(s)	137, 202
BlsI	GCNGC	2 cut(s)	138, 203
Bme1390I	CCNGG	3 cut(s)	29, 94, 224
BmiI	GGNNCC	2 cut(s)	34, 91
BmrFI	CCNGG	3 cut(s)	29, 94, 224
BmsI	GCATC	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	28, 223
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 59
BseBI	CCWGG	2 cut(s)	29, 224
BseDI	CCNNGG	2 cut(s)	28, 223
BseGI	GGATG	6 cut(s)	19, 49, 102, 217, 280, 285
BseLI	CCNNNNNNNGG	2 cut(s)	42, 59
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	1 cut(s)	320
BshNI	GGYRCC	2 cut(s)	32, 89
BsiHKAI	GWGCWC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	42, 59
BsnI	GGCC	1 cut(s)	320
Bsp1286I	GDGCHC	2 cut(s)	238, 250
Bsp143I	GATC	5 cut(s)	55, 62, 100, 154, 262
BspACI	CCGC	2 cut(s)	182, 201
BspANI	GGCC	1 cut(s)	320
BspLI	GGNNCC	2 cut(s)	34, 91
BspPI	GGATC	2 cut(s)	70, 108
BspT107I	GGYRCC	2 cut(s)	32, 89
BssECI	CCNNGG	2 cut(s)	28, 223
BssMI	GATC	5 cut(s)	55, 62, 100, 154, 262
BssNI	GRCGYC	1 cut(s)	33
Bst2UI	CCWGG	2 cut(s)	29, 224
Bst4CI	ACNGT	3 cut(s)	172, 194, 233
BstACI	GRCGYC	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	82
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	6 cut(s)	19, 49, 102, 217, 280, 285
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	5 cut(s)	58, 65, 103, 157, 265
BstMBI	GATC	5 cut(s)	55, 62, 100, 154, 262
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 302
BstNI	CCWGG	2 cut(s)	29, 224
BstSCI	CCNGG	3 cut(s)	27, 92, 222
BstV1I	GCAGC	1 cut(s)	148
BstX2I	RGATCY	2 cut(s)	62, 100
BstYI	RGATCY	2 cut(s)	62, 100
BsuRI	GGCC	1 cut(s)	320
BtsCI	GGATG	6 cut(s)	19, 49, 102, 217, 280, 285
Cac8I	GCNNGC	1 cut(s)	82
CfoI	GCGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	2 cut(s)	158, 289
CviJI	RGCY	7 cut(s)	139, 204, 248, 257, 296, 305, 320
CviKI_1	RGCY	7 cut(s)	139, 204, 248, 257, 296, 305, 320
CviQI	GTAC	1 cut(s)	168
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	5 cut(s)	57, 64, 102, 156, 264
DpnII	GATC	5 cut(s)	55, 62, 100, 154, 262
Eco24I	GRGCYC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	125
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	27, 222
EcoT38I	GRGCYC	1 cut(s)	250
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
FaeI	CATG	2 cut(s)	161, 292
FaiI	YATR	4 cut(s)	159, 207, 290, 308
FatI	CATG	2 cut(s)	157, 288
Fnu4HI	GCNGC	2 cut(s)	137, 202
FokI	GGATG	6 cut(s)	26, 36, 109, 224, 287, 292
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	2 cut(s)	137, 202
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	2 cut(s)	137, 202
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	320
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	2 cut(s)	161, 292
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	3 cut(s)	196, 206, 272
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	1 cut(s)	53
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	3 cut(s)	172, 194, 233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 302
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	161, 292
HspAI	GCGC	1 cut(s)	33
KasI	GGCGCC	1 cut(s)	32
Kzo9I	GATC	5 cut(s)	55, 62, 100, 154, 262
LmnI	GCTCC	2 cut(s)	133, 241
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	5 cut(s)	57, 64, 102, 156, 264
MboI	GATC	5 cut(s)	55, 62, 100, 154, 262
MboII	GAAGA	1 cut(s)	64
MflI	RGATCY	2 cut(s)	62, 100
MhlI	GDGCHC	2 cut(s)	238, 250
Mly113I	GGCGCC	1 cut(s)	33
MnlI	CCTC	3 cut(s)	4, 110, 209
MslI	CAYNNNNRTG	2 cut(s)	95, 162
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	3 cut(s)	29, 94, 224
MvaI	CCWGG	2 cut(s)	29, 224
MwoI	GCNNNNNNNGC	2 cut(s)	254, 302
NarI	GGCGCC	1 cut(s)	33
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	5 cut(s)	55, 62, 100, 154, 262
NlaIII	CATG	2 cut(s)	161, 292
NlaIV	GGNNCC	2 cut(s)	34, 91
NmuCI	GTSAC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	138, 203
PluTI	GGCGCC	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	27, 222
PspGI	CCWGG	2 cut(s)	27, 222
PspN4I	GGNNCC	2 cut(s)	34, 91
PsuI	RGATCY	2 cut(s)	62, 100
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
RseI	CAYNNNNRTG	2 cut(s)	95, 162
SatI	GCNGC	2 cut(s)	137, 202
Sau3AI	GATC	5 cut(s)	55, 62, 100, 154, 262
ScrFI	CCNGG	3 cut(s)	29, 94, 224
SduI	GDGCHC	2 cut(s)	238, 250
SetI	ASST	4 cut(s)	24, 121, 141, 220
SfaNI	GCATC	1 cut(s)	270
SfoI	GGCGCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	2 cut(s)	95, 162
SsiI	CCGC	2 cut(s)	182, 201
SspDI	GGCGCC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	3 cut(s)	27, 92, 222
TaaI	ACNGT	3 cut(s)	172, 194, 233
TaqI	TCGA	2 cut(s)	115, 153
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	38
XagI	CCTNNNNNAGG	1 cut(s)	57
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.