Rh7AG101500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001047
Physical Location & Seq
Forward (+)
7899592 .. 7907968
8377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG101500.1

Sequence Viewer

Length: 870 bp
ATGGCTATTGCTCGTCTGGTAGCTATTTATTTCCTTCTTGTTTTTGCTTTTGTTTTCTTGCTTGGAGCGCCGCCTTGGTGTGAGTTCCCTGTGGTTACTGATTGGGAGAGTAGTGTTGTTGTTTGGATGATTGATCGGAGGCCGAGCTCTAACGGCGTGGATCTGGTTTGGACTGAGTTGGATGGGCGAGTCTGGGTTTTGGATCGGGGTCGTCAGATTTCCGACGGTGATAGGGCTTGTACAATCGCTTTGGTTGGCCCTGGTGGTTCGCTGCAGCGTCATGGTGTTGCCGGAGTGGGGTTGGCCCGACCAGTTCAGGGGATCGATCAAAGCTTGGAGGATCTTCAGGTTATCCTGGGCACCTCCGATCGGGTTTATCCCGATCTAGGATCGGGTTTCTTCAATGATTGCGAAGGCACTGGAATGGATCTGAAGTCGGTTCGAGGTGATCAGGAATGGGCGCGAACTTGGGTCTCCTTCGATCCTGGAGATGGTACAGTATCGTCGGCGGTGAACCACGGTGACGGCGGCTATGGGGATGGCGGTTTTCAGGGCAATGGAGCTCCTCCTTGGGCTCTATGGGCTGGTGATCGTTCTGGGGATGGGGTTGCTCAATGTGGTGGCTTTTTTGGCTATGCTGGTGATGGCCTGAAGGTGGTCAGTAGGGGCGGCGGCGACTGCGACGGCGACATGAAACTTGGGAGCGGCCATGTTGTGGAGCAGTTGGTTGTTAGGGTTTCAGAAAATTTGGGCTGTTGGGCTCAAGTATTGGGCTTAGTCTGGATGGGGATGCCTTGGGGCCATATGGGCTCTGAGGTTTTGAAATCTCGTTTGCTTTATGAGTTAAAGCTTGAGACACCTATAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

30.94

Weight (kDa)

4.65

Isoelectric Point (pI)

29.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 715
AccBSI CCGCTC 1 cut(s) 705
AccII CGCG 1 cut(s) 463
AciI CCGC 7 cut(s) 71, 509, 528, 543, 669, 672, 705
AclWI GGATC 7 cut(s) 168, 210, 329, 348, 397, 435, 476
AcoI YGGCCR 1 cut(s) 706
AcsI RAATTY 1 cut(s) 745
AcuI CTGAAG 3 cut(s) 329, 452, 671
AfaI GTAC 2 cut(s) 241, 496
AfiI CCNNNNNNNGG 7 cut(s) 297, 317, 369, 386, 491, 655, 715
AgsI TTSAA 2 cut(s) 403, 823
AjnI CCWGG 3 cut(s) 259, 354, 484
AluBI AGCT 5 cut(s) 23, 147, 333, 563, 850
AluI AGCT 5 cut(s) 23, 147, 333, 563, 850
Alw21I GWGCWC 2 cut(s) 149, 565
Alw26I GTCTC 2 cut(s) 478, 848
AlwI GGATC 7 cut(s) 168, 210, 329, 348, 397, 435, 476
AoxI GGCC 6 cut(s) 140, 256, 303, 646, 706, 799
ApeKI GCWGC 2 cut(s) 271, 274
ApoI RAATTY 1 cut(s) 745
AspLEI GCGC 2 cut(s) 70, 463
AspS9I GGNCC 3 cut(s) 257, 304, 799
AsuHPI GGTGA 6 cut(s) 239, 458, 523, 533, 599, 653
BaeGI GKGCMC 1 cut(s) 362
BanI GGYRCC 1 cut(s) 359
BanII GRGCYC 5 cut(s) 149, 565, 577, 763, 812
Bbv12I GWGCWC 2 cut(s) 149, 565
BbvI GCAGC 2 cut(s) 258, 286
BccI CCATC 6 cut(s) 176, 485, 533, 596, 638, 778
BceAI ACGGC 3 cut(s) 169, 541, 700
BciT130I CCWGG 3 cut(s) 261, 356, 486
BclI TGATCA 1 cut(s) 448
BcoDI GTCTC 2 cut(s) 478, 848
BfaI CTAG 1 cut(s) 386
BfmI CTRYAG 1 cut(s) 272
BfoI RGCGCY 1 cut(s) 71
BglI GCCNNNNNGGC 1 cut(s) 807
BisI GCNGC 7 cut(s) 71, 272, 275, 529, 670, 673, 706
BlsI GCNGC 7 cut(s) 72, 273, 276, 530, 671, 674, 707
Bme1390I CCNGG 3 cut(s) 261, 356, 486
BmgT120I GGNCC 3 cut(s) 257, 304, 799
BmiI GGNNCC 2 cut(s) 361, 800
BmrFI CCNGG 3 cut(s) 261, 356, 486
BmsI GCATC 1 cut(s) 780
BpmI CTGGAG 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 747
Bsa29I ATCGAT 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 478
BsaJI CCNNGG 6 cut(s) 74, 259, 355, 517, 569, 794
Bsc4I CCNNNNNNNGG 7 cut(s) 297, 317, 369, 386, 491, 655, 715
Bse1I ACTGG 2 cut(s) 311, 424
Bse3DI GCAATG 1 cut(s) 562
BseBI CCWGG 3 cut(s) 261, 356, 486
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 6 cut(s) 74, 259, 355, 517, 569, 794
BseGI GGATG 6 cut(s) 132, 187, 544, 607, 789, 795
BseLI CCNNNNNNNGG 7 cut(s) 297, 317, 369, 386, 491, 655, 715
BseMI GCAATG 1 cut(s) 562
BseMII CTCAG 2 cut(s) 165, 804
BseNI ACTGG 2 cut(s) 311, 424
BseRI GAGGAG 1 cut(s) 555
BseSI GKGCMC 1 cut(s) 362
BseXI GCAGC 2 cut(s) 258, 286
Bsh1236I CGCG 1 cut(s) 463
Bsh1285I CGRYCG 1 cut(s) 370
BshFI GGCC 6 cut(s) 142, 258, 305, 648, 708, 801
BshNI GGYRCC 1 cut(s) 359
BshVI ATCGAT 1 cut(s) 324
BsiEI CGRYCG 1 cut(s) 370
BsiHKAI GWGCWC 2 cut(s) 149, 565
BsiSI CCGG 1 cut(s) 291
BslI CCNNNNNNNGG 7 cut(s) 297, 317, 369, 386, 491, 655, 715
BsmAI GTCTC 2 cut(s) 478, 848
BsnI GGCC 6 cut(s) 142, 258, 305, 648, 708, 801
Bso31I GGTCTC 1 cut(s) 478
Bsp1286I GDGCHC 6 cut(s) 149, 362, 565, 577, 763, 812
Bsp1407I TGTACA 1 cut(s) 239
BspACI CCGC 7 cut(s) 71, 509, 528, 543, 669, 672, 705
BspANI GGCC 6 cut(s) 142, 258, 305, 648, 708, 801
BspCNI CTCAG 2 cut(s) 166, 805
BspDI ATCGAT 1 cut(s) 324
BspFNI CGCG 1 cut(s) 463
BspLI GGNNCC 2 cut(s) 361, 800
BspMAI CTGCAG 1 cut(s) 276
BspPI GGATC 7 cut(s) 168, 210, 329, 348, 397, 435, 476
BspT107I GGYRCC 1 cut(s) 359
BspTNI GGTCTC 1 cut(s) 478
BsrBI CCGCTC 1 cut(s) 705
BsrDI GCAATG 1 cut(s) 562
BsrGI TGTACA 1 cut(s) 239
BsrI ACTGG 2 cut(s) 311, 424
BssECI CCNNGG 6 cut(s) 74, 259, 355, 517, 569, 794
BssT1I CCWWGG 3 cut(s) 74, 569, 794
Bst2UI CCWGG 3 cut(s) 261, 356, 486
Bst4CI ACNGT 3 cut(s) 227, 499, 521
BstAUI TGTACA 1 cut(s) 239
BstDEI CTNAG 3 cut(s) 174, 775, 813
BstDSI CCRYGG 1 cut(s) 517
BstF5I GGATG 6 cut(s) 132, 187, 544, 607, 789, 795
BstFNI CGCG 1 cut(s) 463
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 2 cut(s) 70, 463
BstMAI GTCTC 2 cut(s) 478, 848
BstMCI CGRYCG 1 cut(s) 370
BstMWI GCNNNNNNNGC 6 cut(s) 67, 153, 581, 630, 678, 807
BstNI CCWGG 3 cut(s) 261, 356, 486
BstSCI CCNGG 3 cut(s) 259, 354, 484
BstSFI CTRYAG 1 cut(s) 272
BstSLI GKGCMC 1 cut(s) 362
BstUI CGCG 1 cut(s) 463
BstV1I GCAGC 2 cut(s) 258, 286
BstX2I RGATCY 3 cut(s) 160, 340, 427
BstYI RGATCY 3 cut(s) 160, 340, 427
Bsu15I ATCGAT 1 cut(s) 324
BsuRI GGCC 6 cut(s) 142, 258, 305, 648, 708, 801
BsuTUI ATCGAT 1 cut(s) 324
BtgI CCRYGG 1 cut(s) 517
BtsCI GGATG 6 cut(s) 132, 187, 544, 607, 789, 795
BtsIMutI CAGTG 1 cut(s) 417
CfoI GCGC 2 cut(s) 70, 463
Cfr13I GGNCC 3 cut(s) 257, 304, 799
ClaI ATCGAT 1 cut(s) 324
CseI GACGC 1 cut(s) 266
Csp6I GTAC 2 cut(s) 240, 495
CviAII CATG 3 cut(s) 281, 691, 710
CviQI GTAC 2 cut(s) 240, 495
DdeI CTNAG 3 cut(s) 174, 775, 813
EaeI YGGCCR 1 cut(s) 706
Ecl136II GAGCTC 2 cut(s) 147, 563
Eco130I CCWWGG 3 cut(s) 74, 569, 794
Eco24I GRGCYC 5 cut(s) 149, 565, 577, 763, 812
Eco31I GGTCTC 1 cut(s) 478
Eco53kI GAGCTC 2 cut(s) 147, 563
Eco57I CTGAAG 3 cut(s) 329, 452, 671
EcoICRI GAGCTC 2 cut(s) 147, 563
EcoRII CCWGG 3 cut(s) 259, 354, 484
EcoT14I CCWWGG 3 cut(s) 74, 569, 794
EcoT38I GRGCYC 5 cut(s) 149, 565, 577, 763, 812
ErhI CCWWGG 3 cut(s) 74, 569, 794
FaeI CATG 3 cut(s) 284, 694, 713
FatI CATG 3 cut(s) 280, 690, 709
FauNDI CATATG 1 cut(s) 804
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 7 cut(s) 71, 272, 275, 529, 670, 673, 706
FokI GGATG 6 cut(s) 139, 194, 551, 614, 796, 802
FriOI GRGCYC 5 cut(s) 149, 565, 577, 763, 812
Fsp4HI GCNGC 7 cut(s) 71, 272, 275, 529, 670, 673, 706
FspBI CTAG 1 cut(s) 386
GlaI GCGC 2 cut(s) 69, 462
GluI GCNGC 7 cut(s) 71, 272, 275, 529, 670, 673, 706
GsuI CTGGAG 1 cut(s) 507
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 6 cut(s) 142, 258, 305, 648, 708, 801
HapII CCGG 1 cut(s) 291
HgaI GACGC 1 cut(s) 266
HhaI GCGC 2 cut(s) 70, 463
Hin1II CATG 3 cut(s) 284, 694, 713
Hin6I GCGC 2 cut(s) 68, 461
HinP1I GCGC 2 cut(s) 68, 461
HindIII AAGCTT 2 cut(s) 331, 848
HinfI GANTC 1 cut(s) 189
HpaII CCGG 1 cut(s) 291
HphI GGTGA 6 cut(s) 239, 458, 523, 533, 599, 653
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 7 cut(s) 138, 216, 223, 367, 432, 742, 814
Hpy188III TCNNGA 3 cut(s) 380, 452, 781
Hpy8I GTNNAC 1 cut(s) 514
Hpy99I CGWCG 3 cut(s) 227, 508, 686
HpyAV CCTTC 4 cut(s) 44, 407, 487, 646
HpyCH4III ACNGT 3 cut(s) 227, 499, 521
HpyCH4V TGCA 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 6 cut(s) 67, 153, 581, 630, 678, 807
HpyF3I CTNAG 3 cut(s) 174, 775, 813
Hsp92II CATG 3 cut(s) 284, 694, 713
HspAI GCGC 2 cut(s) 68, 461
Ksp22I TGATCA 1 cut(s) 448
LmnI GCTCC 5 cut(s) 65, 560, 568, 702, 718
Lsp1109I GCAGC 2 cut(s) 258, 286
LweI GCATC 1 cut(s) 780
MaeI CTAG 1 cut(s) 386
MaeIII GTNAC 2 cut(s) 94, 521
MbiI CCGCTC 1 cut(s) 705
MboII GAAGA 2 cut(s) 335, 391
MflI RGATCY 3 cut(s) 160, 340, 427
MhlI GDGCHC 6 cut(s) 149, 362, 565, 577, 763, 812
MluCI AATT 1 cut(s) 745
MlyI GAGTC 1 cut(s) 198
MmeI TCCRAC 2 cut(s) 159, 246
MnlI CCTC 6 cut(s) 132, 331, 373, 437, 576, 808
MseI TTAA 1 cut(s) 845
MslI CAYNNNNRTG 1 cut(s) 422
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 3 cut(s) 261, 356, 486
MvaI CCWGG 3 cut(s) 261, 356, 486
MvnI CGCG 1 cut(s) 463
MwoI GCNNNNNNNGC 6 cut(s) 67, 153, 581, 630, 678, 807
NdeI CATATG 1 cut(s) 804
NlaIII CATG 3 cut(s) 284, 694, 713
NlaIV GGNNCC 2 cut(s) 361, 800
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 521
PflMI CCANNNNNTGG 1 cut(s) 715
PfoI TCCNGGA 1 cut(s) 484
PkrI GCNGC 7 cut(s) 72, 273, 276, 530, 671, 674, 707
Ple19I CGATCG 1 cut(s) 370
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
Psp124BI GAGCTC 2 cut(s) 149, 565
Psp6I CCWGG 3 cut(s) 259, 354, 484
PspGI CCWGG 3 cut(s) 259, 354, 484
PspN4I GGNNCC 2 cut(s) 361, 800
PspPI GGNCC 3 cut(s) 257, 304, 799
PstI CTGCAG 1 cut(s) 276
PsuI RGATCY 3 cut(s) 160, 340, 427
PvuI CGATCG 1 cut(s) 370
RsaI GTAC 2 cut(s) 241, 496
RsaNI GTAC 2 cut(s) 240, 495
RseI CAYNNNNRTG 1 cut(s) 422
SacI GAGCTC 2 cut(s) 149, 565
SaqAI TTAA 1 cut(s) 845
SatI GCNGC 7 cut(s) 71, 272, 275, 529, 670, 673, 706
Sau96I GGNCC 3 cut(s) 257, 304, 799
SchI GAGTC 1 cut(s) 198
ScrFI CCNGG 3 cut(s) 261, 356, 486
SduI GDGCHC 6 cut(s) 149, 362, 565, 577, 763, 812
SfaNI GCATC 1 cut(s) 780
SfcI CTRYAG 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 422
SmlI CTYRAG 2 cut(s) 762, 851
SmoI CTYRAG 2 cut(s) 762, 851
Sse9I AATT 1 cut(s) 745
SsiI CCGC 7 cut(s) 71, 509, 528, 543, 669, 672, 705
SspMI CTAG 1 cut(s) 386
SstI GAGCTC 2 cut(s) 149, 565
StyD4I CCNGG 3 cut(s) 259, 354, 484
StyI CCWWGG 3 cut(s) 74, 569, 794
TaaI ACNGT 3 cut(s) 227, 499, 521
TaqI TCGA 3 cut(s) 324, 442, 480
TasI AATT 1 cut(s) 745
TatI WGTACW 1 cut(s) 239
TauI GCSGC 5 cut(s) 73, 531, 672, 675, 708
Tru1I TTAA 1 cut(s) 845
Tru9I TTAA 1 cut(s) 845
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 521
TseI GCWGC 2 cut(s) 271, 274
Tsp45I GTSAC 1 cut(s) 521
TspDTI ATGAA 1 cut(s) 707
TspRI CASTG 1 cut(s) 424
Van91I CCANNNNNTGG 1 cut(s) 715
XapI RAATTY 1 cut(s) 745
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.