RLG00000013102

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001047
Physical Location & Seq
Reverse (-)
26227178 .. 26227828
651 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013102

Sequence Viewer

Length: 501 bp
ATGGCTACTGCTCGTCTGGTAGCTAATCGTTTCCTTCTTTCTTTGGCTTTTGTTTTCTTGCTCGGAGCGCCGCCTTGGGGTGGGCTCCCTGTGGTTACTGATTGGGAGGGTAGTGTTGTTGTTTGGATGGCTGATCGGTGGCCAAGCTCTAACGGTGTGGATCTGGTTTGGCCTGAGTTGGATGGGAGCGTCTGGGTTTTGGATCGGGGTCTTCAGATTCCCGACGGTGATAGGGATTGTACAATTGCTTTGGTTGGTCCTGGTGGCACTGGAATGGATCTGAAGTTGGTTCGCGGTGATCAGGAATGGGCGCGGATTTGGGGCTTTTTCGATCCTGGAGATGGTACAGTAGCGTTGGTGGTGACCCACGGTGACGGCGGCTATGGGGATGGAGGATTCCAGGGCGACGGTGCTCCTACTTGGGCTCTCTGGGCTGGTGATCGTTCTGGGGATGGGGATGCTCAATGTGGTGGTTTTTTGGCTATGCTGGTGATGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

17.54

Weight (kDa)

4.08

Isoelectric Point (pI)

20.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 294, 313
AciI CCGC 4 cut(s) 71, 294, 313, 378
AclWI GGATC 4 cut(s) 168, 210, 285, 326
AcoI YGGCCR 1 cut(s) 140
AcuI CTGAAG 2 cut(s) 197, 302
AfaI GTAC 2 cut(s) 241, 346
AfiI CCNNNNNNNGG 3 cut(s) 77, 80, 341
AjnI CCWGG 3 cut(s) 259, 334, 399
AluBI AGCT 2 cut(s) 23, 147
AluI AGCT 2 cut(s) 23, 147
Alw21I GWGCWC 1 cut(s) 415
AlwI GGATC 4 cut(s) 168, 210, 285, 326
AoxI GGCC 3 cut(s) 140, 170, 495
AspLEI GCGC 2 cut(s) 70, 313
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 5 cut(s) 239, 308, 373, 383, 449
AvaII GGWCC 1 cut(s) 257
BalI TGGCCA 1 cut(s) 142
BanII GRGCYC 2 cut(s) 87, 427
BbsI GAAGAC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 415
BccI CCATC 6 cut(s) 121, 176, 335, 383, 446, 487
BceAI ACGGC 1 cut(s) 391
BciT130I CCWGG 3 cut(s) 261, 336, 401
BclI TGATCA 1 cut(s) 298
BfoI RGCGCY 1 cut(s) 71
BisI GCNGC 2 cut(s) 71, 379
BlsI GCNGC 2 cut(s) 72, 380
Bme1390I CCNGG 3 cut(s) 261, 336, 401
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 3 cut(s) 261, 336, 401
BmsI GCATC 1 cut(s) 448
BpiI GAAGAC 1 cut(s) 203
BpmI CTGGAG 1 cut(s) 357
BsaJI CCNNGG 3 cut(s) 74, 367, 400
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 80, 341
Bse1I ACTGG 1 cut(s) 274
BseBI CCWGG 3 cut(s) 261, 336, 401
BseDI CCNNGG 3 cut(s) 74, 367, 400
BseGI GGATG 5 cut(s) 132, 187, 394, 457, 463
BseLI CCNNNNNNNGG 3 cut(s) 77, 80, 341
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 274
Bsh1236I CGCG 2 cut(s) 294, 313
BshFI GGCC 3 cut(s) 142, 172, 497
BsiHKAI GWGCWC 1 cut(s) 415
BslI CCNNNNNNNGG 3 cut(s) 77, 80, 341
BsnI GGCC 3 cut(s) 142, 172, 497
Bsp1286I GDGCHC 3 cut(s) 87, 415, 427
Bsp1407I TGTACA 1 cut(s) 239
Bsp143I GATC 7 cut(s) 133, 160, 202, 277, 298, 331, 439
BspACI CCGC 4 cut(s) 71, 294, 313, 378
BspANI GGCC 3 cut(s) 142, 172, 497
BspCNI CTCAG 1 cut(s) 166
BspFNI CGCG 2 cut(s) 294, 313
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 4 cut(s) 168, 210, 285, 326
BsrGI TGTACA 1 cut(s) 239
BsrI ACTGG 1 cut(s) 274
BssECI CCNNGG 3 cut(s) 74, 367, 400
BssMI GATC 7 cut(s) 133, 160, 202, 277, 298, 331, 439
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 3 cut(s) 261, 336, 401
Bst4CI ACNGT 5 cut(s) 155, 227, 349, 371, 410
BstAUI TGTACA 1 cut(s) 239
BstDEI CTNAG 1 cut(s) 174
BstDSI CCRYGG 1 cut(s) 367
BstEII GGTNACC 1 cut(s) 361
BstF5I GGATG 5 cut(s) 132, 187, 394, 457, 463
BstFNI CGCG 2 cut(s) 294, 313
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 2 cut(s) 70, 313
BstKTI GATC 7 cut(s) 136, 163, 205, 280, 301, 334, 442
BstMBI GATC 7 cut(s) 133, 160, 202, 277, 298, 331, 439
BstMWI GCNNNNNNNGC 2 cut(s) 67, 431
BstNI CCWGG 3 cut(s) 261, 336, 401
BstPI GGTNACC 1 cut(s) 361
BstSCI CCNGG 3 cut(s) 259, 334, 399
BstUI CGCG 2 cut(s) 294, 313
BstV2I GAAGAC 1 cut(s) 203
BstX2I RGATCY 2 cut(s) 160, 277
BstYI RGATCY 2 cut(s) 160, 277
BsuRI GGCC 3 cut(s) 142, 172, 497
BtgI CCRYGG 1 cut(s) 367
BtsCI GGATG 5 cut(s) 132, 187, 394, 457, 463
BtsIMutI CAGTG 1 cut(s) 267
CfoI GCGC 2 cut(s) 70, 313
Cfr13I GGNCC 1 cut(s) 257
CseI GACGC 1 cut(s) 178
Csp6I GTAC 2 cut(s) 240, 345
CviQI GTAC 2 cut(s) 240, 345
DdeI CTNAG 1 cut(s) 174
DpnI GATC 7 cut(s) 135, 162, 204, 279, 300, 333, 441
DpnII GATC 7 cut(s) 133, 160, 202, 277, 298, 331, 439
EaeI YGGCCR 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 74
Eco24I GRGCYC 2 cut(s) 87, 427
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 2 cut(s) 197, 302
Eco91I GGTNACC 1 cut(s) 361
EcoO65I GGTNACC 1 cut(s) 361
EcoRII CCWGG 3 cut(s) 259, 334, 399
EcoT14I CCWWGG 1 cut(s) 74
EcoT38I GRGCYC 2 cut(s) 87, 427
ErhI CCWWGG 1 cut(s) 74
FaiI YATR 2 cut(s) 384, 485
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 71, 379
FokI GGATG 5 cut(s) 139, 194, 401, 464, 470
FriOI GRGCYC 2 cut(s) 87, 427
Fsp4HI GCNGC 2 cut(s) 71, 379
GlaI GCGC 2 cut(s) 69, 312
GluI GCNGC 2 cut(s) 71, 379
GsuI CTGGAG 1 cut(s) 357
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 3 cut(s) 142, 172, 497
HgaI GACGC 1 cut(s) 178
HhaI GCGC 2 cut(s) 70, 313
Hin6I GCGC 2 cut(s) 68, 311
HinP1I GCGC 2 cut(s) 68, 311
HinfI GANTC 2 cut(s) 217, 396
HphI GGTGA 5 cut(s) 239, 308, 373, 383, 449
Hpy188I TCNGA 3 cut(s) 65, 216, 282
Hpy188III TCNNGA 2 cut(s) 221, 302
Hpy99I CGWCG 2 cut(s) 227, 410
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 5 cut(s) 155, 227, 349, 371, 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 431
HpyF3I CTNAG 1 cut(s) 174
HspAI GCGC 2 cut(s) 68, 311
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 7 cut(s) 133, 160, 202, 277, 298, 331, 439
LmnI GCTCC 4 cut(s) 65, 90, 186, 418
LweI GCATC 1 cut(s) 448
MaeIII GTNAC 3 cut(s) 94, 361, 371
MalI GATC 7 cut(s) 135, 162, 204, 279, 300, 333, 441
MboI GATC 7 cut(s) 133, 160, 202, 277, 298, 331, 439
MboII GAAGA 1 cut(s) 203
MfeI CAATTG 1 cut(s) 243
MflI RGATCY 2 cut(s) 160, 277
MhlI GDGCHC 3 cut(s) 87, 415, 427
MlsI TGGCCA 1 cut(s) 142
MluCI AATT 1 cut(s) 243
MluNI TGGCCA 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 2 cut(s) 100, 386
Mox20I TGGCCA 1 cut(s) 142
MscI TGGCCA 1 cut(s) 142
MslI CAYNNNNRTG 1 cut(s) 272
Msp20I TGGCCA 1 cut(s) 142
MspR9I CCNGG 3 cut(s) 261, 336, 401
MunI CAATTG 1 cut(s) 243
MvaI CCWGG 3 cut(s) 261, 336, 401
MvnI CGCG 2 cut(s) 294, 313
MwoI GCNNNNNNNGC 2 cut(s) 67, 431
NdeII GATC 7 cut(s) 133, 160, 202, 277, 298, 331, 439
NlaIV GGNNCC 1 cut(s) 86
NmuCI GTSAC 2 cut(s) 361, 371
PfeI GAWTC 2 cut(s) 217, 396
PfoI TCCNGGA 1 cut(s) 334
PkrI GCNGC 2 cut(s) 72, 380
Psp6I CCWGG 3 cut(s) 259, 334, 399
PspEI GGTNACC 1 cut(s) 361
PspGI CCWGG 3 cut(s) 259, 334, 399
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 257
PsuI RGATCY 2 cut(s) 160, 277
RsaI GTAC 2 cut(s) 241, 346
RsaNI GTAC 2 cut(s) 240, 345
RseI CAYNNNNRTG 1 cut(s) 272
SatI GCNGC 2 cut(s) 71, 379
Sau3AI GATC 7 cut(s) 133, 160, 202, 277, 298, 331, 439
Sau96I GGNCC 1 cut(s) 257
ScrFI CCNGG 3 cut(s) 261, 336, 401
SduI GDGCHC 3 cut(s) 87, 415, 427
SetI ASST 2 cut(s) 25, 149
SfaNI GCATC 1 cut(s) 448
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 272
Sse9I AATT 1 cut(s) 243
SsiI CCGC 4 cut(s) 71, 294, 313, 378
StyD4I CCNGG 3 cut(s) 259, 334, 399
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 5 cut(s) 155, 227, 349, 371, 410
TaqI TCGA 1 cut(s) 330
TasI AATT 1 cut(s) 243
TatI WGTACW 1 cut(s) 239
TauI GCSGC 2 cut(s) 73, 381
TfiI GAWTC 2 cut(s) 217, 396
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 2 cut(s) 361, 371
Tsp45I GTSAC 2 cut(s) 361, 371
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.