RLG00000030019

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001047
Physical Location & Seq
Forward (+)
53391895 .. 53392792
898 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030019

Sequence Viewer

Length: 786 bp
ATGGGGAGTACTAGTTCCCCCAATTCTTCTGTCCGTGTCATCAAGAAATATGCAGTGGATGGTCTTAAGGACAAGGCCTTGGAAGAACACTTGAACATGATTCGGGACAAAGACTCTCTTCACAAATATCGGGCAAAGCTGTACAAATCTATAGCAAAATTCGCTATCGTTGATGAAGCCTTAGATCAGCTAATTAAGGTTCACTCTGAGCCGCCCACCCGCACTGTTGTCATTGGGAACAAGCAAGTAATGTCATACACTTATTCTGGCAATTCCTCTGCCGATGACCTCAAGAAACATGCAATGGAGGTTTTCAAGGATGTGACCAAAGATTCTGAAGAGCTCCTTAAGAAGGCCATACTGCCCGTTGCGGCGGTTCACACCTATGTCATTGGGGTTGGGGTCGCTGCCGGCAATACCAATGCTGCTCTCGAGGCCTTTCAGCACATGTCAGCCTCTGGGGTTGCTCCAAACTCCTGTACTTATGCAGTTTTGATCAAGGGACTCACTGCTGACCCCAACTACTGTGGAGATGCCAAGAAGTTATTGCTTGAGATGATGGACAAGGGTATGAGGCCCAATGCTGCTGCCTACACTGCGGTGATAGAGGGCTTTGCAAAGCTGGAGGACAAGGCAGCTGAGGAGGAGGGCAAACAGTTGGTGGATGTGATGATGCATAAGGGGTTTGTGCCAAATGCAAAGGCTATGATGGAGGTTCTAAAGGGAAGGCCAACACCTTTAATAAGAAGGGTCATCAACATTGCCCTTTCCAAGTTGAAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

262

Amino Acids

28.39

Weight (kDa)

9.16

Isoelectric Point (pI)

33.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 135 - 169 8.5e-07 PPR repeat family
TPR_24 PF23276 135 - 211 7.5e-06 Fungal tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 212, 220, 371, 374, 599
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 3 cut(s) 10, 143, 481
AfiI CCNNNNNNNGG 1 cut(s) 352
AflII CTTAAG 2 cut(s) 65, 347
AflIII ACRYGT 1 cut(s) 447
AgsI TTSAA 3 cut(s) 94, 316, 778
AhlI ACTAGT 1 cut(s) 11
AleI CACNNNNGTG 1 cut(s) 599
AloI GAACNNNNNNTCC 1 cut(s) 30
AluBI AGCT 5 cut(s) 139, 190, 343, 622, 638
AluI AGCT 5 cut(s) 139, 190, 343, 622, 638
Alw21I GWGCWC 1 cut(s) 345
AlwNI CAGNNNCTG 1 cut(s) 458
Ama87I CYCGRG 1 cut(s) 431
AoxI GGCC 5 cut(s) 75, 354, 435, 575, 728
ApeKI GCWGC 5 cut(s) 407, 425, 584, 587, 635
ApoI RAATTY 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 576
AsuHPI GGTGA 1 cut(s) 613
AvaI CYCGRG 1 cut(s) 431
BanII GRGCYC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 345
BbvCI CCTCAGC 1 cut(s) 639
BbvI GCAGC 5 cut(s) 394, 412, 571, 574, 647
BccI CCATC 3 cut(s) 53, 553, 703
BclI TGATCA 1 cut(s) 495
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 150
BfrI CTTAAG 2 cut(s) 65, 347
BisI GCNGC 7 cut(s) 212, 372, 408, 426, 585, 588, 636
BlsI GCNGC 7 cut(s) 213, 373, 409, 427, 586, 589, 637
BmcAI AGTACT 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 431
BmgT120I GGNCC 1 cut(s) 576
BmsI GCATC 2 cut(s) 523, 663
BpmI CTGGAG 1 cut(s) 644
Bpu10I CCTNAGC 1 cut(s) 639
BpuEI CTTGAG 2 cut(s) 275, 572
BsaJI CCNNGG 1 cut(s) 78
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse118I RCCGGY 1 cut(s) 410
Bse3DI GCAATG 2 cut(s) 309, 759
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 3 cut(s) 64, 325, 670
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMI GCAATG 2 cut(s) 309, 759
BseMII CTCAG 2 cut(s) 198, 630
BseRI GAGGAG 2 cut(s) 656, 659
BseXI GCAGC 5 cut(s) 394, 412, 571, 574, 647
BshFI GGCC 5 cut(s) 77, 356, 437, 577, 730
BsiHKAI GWGCWC 1 cut(s) 345
BsiHKCI CYCGRG 1 cut(s) 431
BsiSI CCGG 1 cut(s) 411
BslFI GGGAC 2 cut(s) 119, 516
BslI CCNNNNNNNGG 1 cut(s) 352
BsmFI GGGAC 2 cut(s) 119, 516
BsnI GGCC 5 cut(s) 77, 356, 437, 577, 730
BsoBI CYCGRG 1 cut(s) 431
Bsp1286I GDGCHC 1 cut(s) 345
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 2 cut(s) 184, 495
BspACI CCGC 5 cut(s) 212, 220, 371, 374, 599
BspANI GGCC 5 cut(s) 77, 356, 437, 577, 730
BspCNI CTCAG 2 cut(s) 199, 631
BspQI GCTCTTC 1 cut(s) 333
BspTI CTTAAG 2 cut(s) 65, 347
BsrDI GCAATG 2 cut(s) 309, 759
BsrFI RCCGGY 1 cut(s) 410
BsrGI TGTACA 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 410
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 2 cut(s) 184, 495
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 3 cut(s) 226, 527, 657
Bst6I CTCTTC 2 cut(s) 123, 333
BstAFI CTTAAG 2 cut(s) 65, 347
BstAUI TGTACA 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 3 cut(s) 181, 207, 639
BstENI CCTNNNNNAGG 1 cut(s) 350
BstF5I GGATG 3 cut(s) 64, 325, 670
BstKTI GATC 2 cut(s) 187, 498
BstMBI GATC 2 cut(s) 184, 495
BstMWI GCNNNNNNNGC 3 cut(s) 161, 434, 596
BstNSI RCATGY 2 cut(s) 302, 451
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 5 cut(s) 394, 412, 571, 574, 647
BsuRI GGCC 5 cut(s) 77, 356, 437, 577, 730
BtsCI GGATG 3 cut(s) 64, 325, 670
BtsI GCAGTG 3 cut(s) 60, 507, 594
BtsIMutI CAGTG 4 cut(s) 60, 222, 507, 594
Cac8I GCNNGC 1 cut(s) 412
CaiI CAGNNNCTG 1 cut(s) 458
Cfr10I RCCGGY 1 cut(s) 410
Cfr13I GGNCC 1 cut(s) 576
Csp6I GTAC 3 cut(s) 9, 142, 480
CspCI CAANNNNNGTGG 2 cut(s) 508, 543
CviAII CATG 3 cut(s) 97, 299, 448
CviQI GTAC 3 cut(s) 9, 142, 480
DdeI CTNAG 3 cut(s) 181, 207, 639
DpnI GATC 2 cut(s) 186, 497
DpnII GATC 2 cut(s) 184, 495
Eam1104I CTCTTC 2 cut(s) 123, 333
EarI CTCTTC 2 cut(s) 123, 333
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 1 cut(s) 78
Eco147I AGGCCT 2 cut(s) 77, 437
Eco24I GRGCYC 1 cut(s) 345
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 431
EcoICRI GAGCTC 1 cut(s) 343
EcoNI CCTNNNNNAGG 1 cut(s) 350
EcoT14I CCWWGG 1 cut(s) 78
EcoT22I ATGCAT 1 cut(s) 678
EcoT38I GRGCYC 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 3 cut(s) 100, 302, 451
FalI AAGNNNNNCTT 4 cut(s) 102, 134, 330, 362
FaqI GGGAC 2 cut(s) 119, 516
FatI CATG 3 cut(s) 96, 298, 447
FauI CCCGC 1 cut(s) 227
FbaI TGATCA 1 cut(s) 495
Fnu4HI GCNGC 7 cut(s) 212, 372, 408, 426, 585, 588, 636
FokI GGATG 3 cut(s) 71, 332, 677
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 7 cut(s) 212, 372, 408, 426, 585, 588, 636
FspBI CTAG 1 cut(s) 12
GluI GCNGC 7 cut(s) 212, 372, 408, 426, 585, 588, 636
GsuI CTGGAG 1 cut(s) 644
HaeIII GGCC 5 cut(s) 77, 356, 437, 577, 730
HapII CCGG 1 cut(s) 411
Hin1II CATG 3 cut(s) 100, 302, 451
HinfI GANTC 4 cut(s) 100, 113, 332, 504
HpaII CCGG 1 cut(s) 411
HphI GGTGA 1 cut(s) 613
Hpy166II GTNNAC 2 cut(s) 202, 379
Hpy188I TCNGA 2 cut(s) 208, 337
Hpy188III TCNNGA 4 cut(s) 43, 104, 292, 431
Hpy8I GTNNAC 2 cut(s) 202, 379
HpyAV CCTTC 4 cut(s) 346, 720, 741, 772
HpyCH4III ACNGT 3 cut(s) 226, 527, 657
HpyCH4V TGCA 6 cut(s) 53, 302, 488, 617, 676, 698
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 434, 596
HpyF3I CTNAG 3 cut(s) 181, 207, 639
Hsp92II CATG 3 cut(s) 100, 302, 451
KroI GCCGGC 1 cut(s) 410
KroNI GCCGGC 1 cut(s) 412
Ksp22I TGATCA 1 cut(s) 495
Kzo9I GATC 2 cut(s) 184, 495
LguI GCTCTTC 1 cut(s) 333
LmnI GCTCC 2 cut(s) 348, 472
LpnPI CCDG 5 cut(s) 252, 424, 444, 490, 608
Lsp1109I GCAGC 5 cut(s) 394, 412, 571, 574, 647
LweI GCATC 2 cut(s) 523, 663
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 322
MalI GATC 2 cut(s) 186, 497
MboI GATC 2 cut(s) 184, 495
MboII GAAGA 4 cut(s) 18, 95, 110, 350
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 4 cut(s) 22, 158, 192, 271
MlyI GAGTC 2 cut(s) 107, 498
Mph1103I ATGCAT 1 cut(s) 678
MroNI GCCGGC 1 cut(s) 410
MseI TTAA 4 cut(s) 66, 195, 348, 740
MslI CAYNNNNRTG 2 cut(s) 384, 599
MspA1I CMGCKG 1 cut(s) 638
MspCI CTTAAG 2 cut(s) 65, 347
MspI CCGG 1 cut(s) 411
MwoI GCNNNNNNNGC 3 cut(s) 161, 434, 596
NaeI GCCGGC 1 cut(s) 412
NdeII GATC 2 cut(s) 184, 495
NgoMIV GCCGGC 1 cut(s) 410
NlaIII CATG 3 cut(s) 100, 302, 451
NmuCI GTSAC 1 cut(s) 322
NsiI ATGCAT 1 cut(s) 678
NspI RCATGY 2 cut(s) 302, 451
OliI CACNNNNGTG 1 cut(s) 599
PaeR7I CTCGAG 1 cut(s) 431
PceI AGGCCT 2 cut(s) 77, 437
PciI ACATGT 1 cut(s) 447
PciSI GCTCTTC 1 cut(s) 333
PdiI GCCGGC 1 cut(s) 412
PfeI GAWTC 2 cut(s) 100, 332
PkrI GCNGC 7 cut(s) 213, 373, 409, 427, 586, 589, 637
PleI GAGTC 2 cut(s) 107, 498
PpsI GAGTC 2 cut(s) 107, 498
PscI ACATGT 1 cut(s) 447
Psp124BI GAGCTC 1 cut(s) 345
PspPI GGNCC 1 cut(s) 576
PstNI CAGNNNCTG 1 cut(s) 458
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 3 cut(s) 10, 143, 481
RsaNI GTAC 3 cut(s) 9, 142, 480
RseI CAYNNNNRTG 2 cut(s) 384, 599
SacI GAGCTC 1 cut(s) 345
SapI GCTCTTC 1 cut(s) 333
SaqAI TTAA 4 cut(s) 66, 195, 348, 740
SatI GCNGC 7 cut(s) 212, 372, 408, 426, 585, 588, 636
Sau3AI GATC 2 cut(s) 184, 495
Sau96I GGNCC 1 cut(s) 576
ScaI AGTACT 1 cut(s) 10
SchI GAGTC 2 cut(s) 107, 498
SduI GDGCHC 1 cut(s) 345
SfaNI GCATC 2 cut(s) 523, 663
SfcI CTRYAG 1 cut(s) 150
Sfr274I CTCGAG 1 cut(s) 431
SlaI CTCGAG 1 cut(s) 431
SmiMI CAYNNNNRTG 2 cut(s) 384, 599
SmlI CTYRAG 5 cut(s) 65, 290, 347, 431, 551
SmoI CTYRAG 5 cut(s) 65, 290, 347, 431, 551
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 4 cut(s) 22, 158, 192, 271
SseBI AGGCCT 2 cut(s) 77, 437
SsiI CCGC 5 cut(s) 212, 220, 371, 374, 599
SspMI CTAG 1 cut(s) 12
SstI GAGCTC 1 cut(s) 345
StuI AGGCCT 2 cut(s) 77, 437
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 3 cut(s) 226, 527, 657
TaqI TCGA 1 cut(s) 432
TasI AATT 4 cut(s) 22, 158, 192, 271
TatI WGTACW 3 cut(s) 8, 141, 479
TauI GCSGC 2 cut(s) 214, 374
TfiI GAWTC 2 cut(s) 100, 332
Tru1I TTAA 4 cut(s) 66, 195, 348, 740
Tru9I TTAA 4 cut(s) 66, 195, 348, 740
TscAI CASTG 4 cut(s) 60, 229, 514, 601
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 5 cut(s) 407, 425, 584, 587, 635
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 1 cut(s) 189
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 4 cut(s) 60, 229, 514, 601
Vha464I CTTAAG 2 cut(s) 65, 347
XagI CCTNNNNNAGG 1 cut(s) 350
XapI RAATTY 1 cut(s) 158
XceI RCATGY 2 cut(s) 302, 451
XhoI CTCGAG 1 cut(s) 431
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 10
Zsp2I ATGCAT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.