Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001047

Physical Location & Seq

Genomic Coordinates Reverse (-)

36406607 .. 36412248

Gene Structure 5642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19544

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAGGACACTAGTTTCCCCAATTCTTCCGCCGATGTCATGAAGGTTTTCAAGGATGCAACCAAAGACTGTGAGGACAAGGTCTTGAAAAAAATGTTTGACTCCATTGGGGACTATGACTCCCTTAACAAATTTGCCTTTCAATTCTTCGGTATATTGGTAAATTTCGGCATCCCTGAGGAAGCCAAAGAGCTCTTCAAGCCTCGCTCTCAGTTGGCTGTACTGCCTGACGCGGCCATCTTCACCATTGTCATTCTGGCCTATGCCAATGCCGGAAAGACCAAGGCTGCCCACAAGGTCTACCAGCAAATGATAGCCACCGGTGTCGCCCCCACTTCCTGCACTTACACCATACTCATCATGGCACTTGCAACAGACTCGTCTTCTGATGCTGGACAAGGGGATGAGGCCAAGAAGTGCTTGCTTGAGATGATGGACAAGGGGATGAGGCCTAATGCTGCTACCTACACTGCTGTGATAGAGAGCTTTGCAAAGCAAGAGGACGAGGCATCTGAGGAGGAGTGCAAAGAGTTTGTGGAAGTGATGGTGGGTAAGGGGTTTGTTCCAAACTCAAAGGCTATGAGGGAGGTTCTAAAGGGAAGGCCAACTCCATTAGTCAAAAGGGATGTTTCAGAGATGGAGTTGGAAATCATGGAGATGGAGTTTATTCTCTATTTGTCTCTTACTTTGATGTCAACATTCACAATCCCACAAAATCCCACATTGGAGCCCATTCCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

247

Amino Acids

27.35

Weight (kDa)

4.74

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	76 - 124	1.4e-11	PPR repeat family
PPR_3	PF13812	76 - 122	1.5e-06	Pentatricopeptide repeat domain
PPR_long	PF17177	92 - 190	2.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	131 - 165	2.4e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001047)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c11g0499391 RchiOBHm_Chr3g0447361 RchiOBHm_Chr7g0218341 RchiOBHm_Chr7g0226151 RchiOBHm_Chr7g0236171 RchiOBHm_Chr7g0236221
rosa_laevigata	RLG00000001100 RLG00000001939 RLG00000012810 RLG00000013102 RLG00000013301 RLG00000020513 RLG00000030019 RLG00000037087
rosa_multiflora	Rmu_sc0000570.1_g000004 Rmu_sc0010974.1_g000003 Rmu_sc0014688.1_g000003 Rmu_sc0040332.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000490 Rroxscaffold_3G00225330 Rroxscaffold_3G00227720 Rroxscaffold_6G00410030 Rroxscaffold_7G00159290
rosa_rugosa	Rorug03G0036000 Rorug05G0301600 Rorug07G0294600 Rorug07G0294600 Rorug07G0294600 Rorug07G0295400 Rorug07G0295400
rosa_samantha	Rh1AG363600 Rh1BG122700 Rh1CG048900 Rh1CG366200 Rh1DG053200 Rh1DG383900 Rh2BG407500 Rh2CG090200 Rh2CG606900 Rh2DG420300 Rh2DG655300 Rh3DG114600 Rh4AG182100 Rh4CG412200 Rh4CG453300 Rh4DG240200 Rh4DG240300 Rh5AG138000 Rh5BG568100 Rh5DG205500 Rh6AG006600 Rh6AG084300 Rh6AG150400 Rh6BG073500 Rh6BG279100 Rh6CG073700 Rh6DG070600 Rh7AG101500 Rh7DG439100
rosa_wichuraiana	Rw2G020930 Rw7G037370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	1 cut(s)	233
AciI	CCGC	2 cut(s)	30, 233
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	2 cut(s)	131, 163
AfaI	GTAC	1 cut(s)	222
AgeI	ACCGGT	1 cut(s)	320
AgsI	TTSAA	4 cut(s)	52, 88, 143, 199
AhlI	ACTAGT	1 cut(s)	11
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AleI	CACNNNNGTG	1 cut(s)	473
AluBI	AGCT	2 cut(s)	193, 486
AluI	AGCT	2 cut(s)	193, 486
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	684
AoxI	GGCC	5 cut(s)	234, 258, 408, 449, 602
ApeKI	GCWGC	2 cut(s)	287, 458
ApoI	RAATTY	2 cut(s)	131, 163
AsiGI	ACCGGT	1 cut(s)	320
Asp700I	GAANNNNTTC	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	235
AxyI	CCTNAGG	1 cut(s)	177
BanII	GRGCYC	2 cut(s)	195, 732
BbsI	GAAGAC	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	274, 445
BccI	CCATC	5 cut(s)	245, 427, 538, 631, 652
BcgI	CGANNNNNNTGC	2 cut(s)	360, 394
BcoDI	GTCTC	1 cut(s)	684
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	3 cut(s)	234, 288, 459
BlsI	GCNGC	3 cut(s)	235, 289, 460
BmiI	GGNNCC	1 cut(s)	729
BmsI	GCATC	4 cut(s)	46, 180, 379, 518
BpiI	GAAGAC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	446
BsaJI	CCNNGG	1 cut(s)	282
BsaWI	WCCGGW	1 cut(s)	320
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 647, 677
Bse118I	RCCGGY	1 cut(s)	320
Bse21I	CCTNAGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	5 cut(s)	61, 171, 409, 450, 631
BseMII	CTCAG	3 cut(s)	168, 224, 504
BseRI	GAGGAG	2 cut(s)	530, 533
BseXI	GCAGC	2 cut(s)	274, 445
BsgI	GTGCAG	1 cut(s)	325
Bsh1236I	CGCG	1 cut(s)	233
BshFI	GGCC	5 cut(s)	236, 260, 410, 451, 604
BshTI	ACCGGT	1 cut(s)	320
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	273, 321
BslFI	GGGAC	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	684
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	5 cut(s)	236, 260, 410, 451, 604
Bsp1286I	GDGCHC	2 cut(s)	195, 732
BspACI	CCGC	2 cut(s)	30, 233
BspANI	GGCC	5 cut(s)	236, 260, 410, 451, 604
BspCNI	CTCAG	3 cut(s)	169, 223, 505
BspFNI	CGCG	1 cut(s)	233
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	729
BspQI	GCTCTTC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	3 cut(s)	177, 210, 513
BstF5I	GGATG	5 cut(s)	61, 171, 409, 450, 631
BstFNI	CGCG	1 cut(s)	233
BstMAI	GTCTC	1 cut(s)	684
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	2 cut(s)	274, 445
BstV2I	GAAGAC	1 cut(s)	375
Bsu36I	CCTNAGG	1 cut(s)	177
BsuRI	GGCC	5 cut(s)	236, 260, 410, 451, 604
BtsCI	GGATG	5 cut(s)	61, 171, 409, 450, 631
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	422
CciI	TCATGA	1 cut(s)	39
Cfr10I	RCCGGY	1 cut(s)	320
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	221
CspAI	ACCGGT	1 cut(s)	320
CviAII	CATG	4 cut(s)	40, 361, 652, 741
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	3 cut(s)	177, 210, 513
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
EciI	GGCGGA	1 cut(s)	19
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	282
Eco147I	AGGCCT	1 cut(s)	451
Eco24I	GRGCYC	2 cut(s)	195, 732
Eco53kI	GAGCTC	1 cut(s)	193
Eco81I	CCTNAGG	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	2 cut(s)	195, 732
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	4 cut(s)	43, 364, 655, 744
FaiI	YATR	9 cut(s)	41, 117, 155, 264, 353, 362, 581, 653, 742
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	4 cut(s)	39, 360, 651, 740
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	3 cut(s)	234, 288, 459
FokI	GGATG	5 cut(s)	68, 158, 416, 457, 638
FriOI	GRGCYC	2 cut(s)	195, 732
Fsp4HI	GCNGC	3 cut(s)	234, 288, 459
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	3 cut(s)	234, 288, 459
HaeIII	GGCC	5 cut(s)	236, 260, 410, 451, 604
HapII	CCGG	2 cut(s)	273, 321
HgaI	GACGC	1 cut(s)	239
Hin1II	CATG	4 cut(s)	43, 364, 655, 744
HincII	GTYRAC	1 cut(s)	696
HindII	GTYRAC	1 cut(s)	696
HinfI	GANTC	3 cut(s)	101, 119, 377
HpaII	CCGG	2 cut(s)	273, 321
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	2 cut(s)	301, 696
Hpy188I	TCNGA	3 cut(s)	388, 514, 634
Hpy188III	TCNNGA	2 cut(s)	40, 85
Hpy8I	GTNNAC	2 cut(s)	301, 696
HpyAV	CCTTC	2 cut(s)	37, 594
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4V	TGCA	5 cut(s)	59, 342, 371, 491, 525
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	3 cut(s)	177, 210, 513
Hsp92II	CATG	4 cut(s)	43, 364, 655, 744
LguI	GCTCTTC	1 cut(s)	200
LmnI	GCTCC	1 cut(s)	727
LpnPI	CCDG	8 cut(s)	189, 240, 242, 286, 317, 334, 352, 378
Lsp1109I	GCAGC	2 cut(s)	274, 445
LweI	GCATC	4 cut(s)	46, 180, 379, 518
MaeI	CTAG	1 cut(s)	12
MboII	GAAGA	5 cut(s)	18, 139, 187, 232, 375
MhlI	GDGCHC	2 cut(s)	195, 732
MluCI	AATT	4 cut(s)	22, 131, 143, 163
MlyI	GAGTC	3 cut(s)	95, 113, 371
MmeI	TCCRAC	1 cut(s)	624
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	2 cut(s)	473, 656
MspI	CCGG	2 cut(s)	273, 321
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	199
NlaIII	CATG	4 cut(s)	43, 364, 655, 744
NlaIV	GGNNCC	1 cut(s)	729
OliI	CACNNNNGTG	1 cut(s)	473
PagI	TCATGA	1 cut(s)	39
PceI	AGGCCT	1 cut(s)	451
PciSI	GCTCTTC	1 cut(s)	200
PdmI	GAANNNNTTC	1 cut(s)	47
PflFI	GACNNNGTC	1 cut(s)	80
PinAI	ACCGGT	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	235, 289, 460
PleI	GAGTC	3 cut(s)	95, 113, 371
PpsI	GAGTC	3 cut(s)	95, 113, 371
Psp124BI	GAGCTC	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	729
PsyI	GACNNNGTC	1 cut(s)	80
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
RseI	CAYNNNNRTG	2 cut(s)	473, 656
SacI	GAGCTC	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	3 cut(s)	234, 288, 459
SchI	GAGTC	3 cut(s)	95, 113, 371
SduI	GDGCHC	2 cut(s)	195, 732
SetI	ASST	7 cut(s)	48, 84, 195, 300, 467, 488, 591
SfaNI	GCATC	4 cut(s)	46, 180, 379, 518
SgrAI	CRCCGGYG	1 cut(s)	320
SmiMI	CAYNNNNRTG	2 cut(s)	473, 656
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SpeI	ACTAGT	1 cut(s)	11
Sse9I	AATT	4 cut(s)	22, 131, 143, 163
SseBI	AGGCCT	1 cut(s)	451
SsiI	CCGC	2 cut(s)	30, 233
SspMI	CTAG	1 cut(s)	12
SstI	GAGCTC	1 cut(s)	195
StuI	AGGCCT	1 cut(s)	451
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	71
TasI	AATT	4 cut(s)	22, 131, 143, 163
TatI	WGTACW	1 cut(s)	220
TauI	GCSGC	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	475
TseI	GCWGC	2 cut(s)	287, 458
TspDTI	ATGAA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	475
Tth111I	GACNNNGTC	1 cut(s)	80
XapI	RAATTY	2 cut(s)	131, 163
XcmI	CCANNNNNNNNNTGG	2 cut(s)	253, 358
XmiI	GTMKAC	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.