RLG00000037087

component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001047
Physical Location & Seq
Reverse (-)
88202361 .. 88206446
4086 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037087

Sequence Viewer

Length: 804 bp
ATGACCTTCCATCAATCCACCCCATTGCCTATTCCATTTAAAAATTCCGGTATCCCAACTTTCTCCGAGTATGGGGTTGATTTGGTGGAGAATCTTGCAAGCCCAGTTGTTGAATGCGGCGTCAAAATTGTTCTGGTGTGGAATAGTAGTTGTCACAGATCTACAGGTTTTGAGCAAGCTATCCAAGCCTATGCAGTTCATGTTCTTTCCTTGACTTACCAAAAGGTTGCCAGATCTGTGCTTGCTGAGGCAATCAACCGTGAAGGTCGTCAGACTTCCGACTGTGAAAGGGATTGTACAATCGATTTGGTTAGTCCTGGGGGTTCGCTGCAGCATCGAAGTGTCGCCGGAGTTGGATTGGTCCGACCAGTTCAGGGGATCGATCAAAGCTTAGAGGATCTTCAGGTTGTCCTGGGCGTCTCCGATCGGGTTCGTACCGATCTTGGATCTGGTTTTTTCAATGCTTGCAAAGGCACCGGAATAGATATGAAGTTGGTTCGAGGTGATCAGGACTGGGTCCGGATTTGGGTGCCTTTCGATCCTGGAGATGGTACAGTATCGTCGGCGGTAACCCACGGTGACGCCGGCTATGGGGATGGAGGTTTCCAGGGCGACGGTGTTCCTACTTGGGCTCTCTGGGCTGGTGATCGTCCTGGGGATGGGGATGCTCAACATGGTGGCTATTTAGGCTATGCTGGTGATGGCCTGAAGGAGGTCAATAGGGGCGATGGCACTTTGACGGCGACGGCGACATGCAACTTGGTAGCGGCTATGTTATGGAGCAGCTGGCTGCTAGGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0032991 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CSN8_PSD8_EIF3K

Protein Analysis

268

Amino Acids

28.4

Weight (kDa)

4.86

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 473, 529
AccIII TCCGGA 1 cut(s) 519
AciI CCGC 3 cut(s) 117, 566, 767
AclWI GGATC 4 cut(s) 386, 405, 454, 533
AcsI RAATTY 1 cut(s) 43
AcuI CTGAAG 2 cut(s) 386, 728
AcyI GRCGYC 3 cut(s) 120, 417, 582
AfaI GTAC 3 cut(s) 298, 436, 553
AfiI CCNNNNNNNGG 7 cut(s) 72, 374, 526, 548, 591, 659, 712
AgsI TTSAA 2 cut(s) 113, 460
AjnI CCWGG 5 cut(s) 316, 411, 541, 606, 652
AluBI AGCT 3 cut(s) 179, 390, 786
AluI AGCT 3 cut(s) 179, 390, 786
Alw26I GTCTC 1 cut(s) 424
AlwI GGATC 4 cut(s) 386, 405, 454, 533
Aor13HI TCCGGA 1 cut(s) 519
AoxI GGCC 1 cut(s) 703
ApeKI GCWGC 4 cut(s) 328, 331, 783, 790
ApoI RAATTY 1 cut(s) 43
AspS9I GGNCC 2 cut(s) 361, 517
AsuHPI GGTGA 4 cut(s) 515, 590, 656, 710
AvaII GGWCC 2 cut(s) 361, 517
BanI GGYRCC 2 cut(s) 473, 529
BanII GRGCYC 1 cut(s) 634
BbvCI CCTCAGC 1 cut(s) 246
BbvI GCAGC 4 cut(s) 315, 343, 777, 795
BccI CCATC 6 cut(s) 18, 542, 590, 653, 695, 722
BceAI ACGGC 2 cut(s) 756, 762
BciT130I CCWGG 5 cut(s) 318, 413, 543, 608, 654
BciVI GTATCC 1 cut(s) 62
BclI TGATCA 1 cut(s) 505
BcoDI GTCTC 1 cut(s) 424
BfaI CTAG 1 cut(s) 794
BfmI CTRYAG 2 cut(s) 162, 329
BfuI GTATCC 1 cut(s) 62
BglII AGATCT 2 cut(s) 158, 233
BisI GCNGC 6 cut(s) 118, 329, 332, 768, 784, 791
BlsI GCNGC 6 cut(s) 119, 330, 333, 769, 785, 792
Bme1390I CCNGG 5 cut(s) 318, 413, 543, 608, 654
Bme18I GGWCC 2 cut(s) 361, 517
BmgT120I GGNCC 2 cut(s) 361, 517
BmiI GGNNCC 3 cut(s) 475, 518, 531
BmrFI CCNGG 5 cut(s) 318, 413, 543, 608, 654
BmrI ACTGGG 2 cut(s) 98, 523
BmsI GCATC 2 cut(s) 343, 655
BmuI ACTGGG 2 cut(s) 98, 523
BpmI CTGGAG 1 cut(s) 564
Bpu10I CCTNAGC 1 cut(s) 246
Bsa29I ATCGAT 2 cut(s) 303, 381
BsaHI GRCGYC 3 cut(s) 120, 417, 582
BsaJI CCNNGG 5 cut(s) 317, 412, 574, 607, 653
BsaWI WCCGGW 3 cut(s) 47, 476, 519
Bsc4I CCNNNNNNNGG 7 cut(s) 72, 374, 526, 548, 591, 659, 712
Bse118I RCCGGY 1 cut(s) 584
Bse1I ACTGG 3 cut(s) 104, 368, 518
Bse3DI GCAATG 1 cut(s) 23
BseAI TCCGGA 1 cut(s) 519
BseBI CCWGG 5 cut(s) 318, 413, 543, 608, 654
BseCI ATCGAT 2 cut(s) 303, 381
BseDI CCNNGG 5 cut(s) 317, 412, 574, 607, 653
BseGI GGATG 3 cut(s) 601, 664, 670
BseLI CCNNNNNNNGG 7 cut(s) 72, 374, 526, 548, 591, 659, 712
BseMI GCAATG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 3 cut(s) 104, 368, 518
BseXI GCAGC 4 cut(s) 315, 343, 777, 795
Bsh1285I CGRYCG 1 cut(s) 427
BshFI GGCC 1 cut(s) 705
BshNI GGYRCC 2 cut(s) 473, 529
BshVI ATCGAT 2 cut(s) 303, 381
BsiEI CGRYCG 1 cut(s) 427
BsiSI CCGG 5 cut(s) 48, 348, 477, 520, 585
BslI CCNNNNNNNGG 7 cut(s) 72, 374, 526, 548, 591, 659, 712
BsmAI GTCTC 1 cut(s) 424
BsmBI CGTCTC 1 cut(s) 424
BsmI GAATGC 1 cut(s) 119
BsnI GGCC 1 cut(s) 705
Bsp1286I GDGCHC 1 cut(s) 634
Bsp13I TCCGGA 1 cut(s) 519
Bsp1407I TGTACA 1 cut(s) 296
BspACI CCGC 3 cut(s) 117, 566, 767
BspANI GGCC 1 cut(s) 705
BspCNI CTCAG 1 cut(s) 238
BspDI ATCGAT 2 cut(s) 303, 381
BspEI TCCGGA 1 cut(s) 519
BspLI GGNNCC 3 cut(s) 475, 518, 531
BspMAI CTGCAG 1 cut(s) 333
BspPI GGATC 4 cut(s) 386, 405, 454, 533
BspT107I GGYRCC 2 cut(s) 473, 529
BsrDI GCAATG 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 584
BsrGI TGTACA 1 cut(s) 296
BsrI ACTGG 3 cut(s) 104, 368, 518
BssAI RCCGGY 1 cut(s) 584
BssECI CCNNGG 5 cut(s) 317, 412, 574, 607, 653
BssNI GRCGYC 3 cut(s) 120, 417, 582
Bst2UI CCWGG 5 cut(s) 318, 413, 543, 608, 654
Bst4CI ACNGT 5 cut(s) 260, 284, 556, 578, 617
BstACI GRCGYC 3 cut(s) 120, 417, 582
BstAUI TGTACA 1 cut(s) 296
BstC8I GCNNGC 6 cut(s) 100, 177, 243, 466, 586, 788
BstDEI CTNAG 2 cut(s) 246, 391
BstDSI CCRYGG 1 cut(s) 574
BstEII GGTNACC 1 cut(s) 568
BstENI CCTNNNNNAGG 1 cut(s) 710
BstF5I GGATG 3 cut(s) 601, 664, 670
BstMAI GTCTC 1 cut(s) 424
BstMCI CGRYCG 1 cut(s) 427
BstMWI GCNNNNNNNGC 3 cut(s) 185, 638, 687
BstNI CCWGG 5 cut(s) 318, 413, 543, 608, 654
BstNSI RCATGY 1 cut(s) 756
BstPI GGTNACC 1 cut(s) 568
BstSCI CCNGG 5 cut(s) 316, 411, 541, 606, 652
BstSFI CTRYAG 2 cut(s) 162, 329
BstV1I GCAGC 4 cut(s) 315, 343, 777, 795
BstX2I RGATCY 4 cut(s) 158, 233, 397, 446
BstYI RGATCY 4 cut(s) 158, 233, 397, 446
Bsu15I ATCGAT 2 cut(s) 303, 381
BsuI GTATCC 1 cut(s) 62
BsuRI GGCC 1 cut(s) 705
BsuTUI ATCGAT 2 cut(s) 303, 381
BtgI CCRYGG 1 cut(s) 574
BtgZI GCGATG 1 cut(s) 741
BtsCI GGATG 3 cut(s) 601, 664, 670
Cac8I GCNNGC 6 cut(s) 100, 177, 243, 466, 586, 788
Cfr10I RCCGGY 1 cut(s) 584
Cfr13I GGNCC 2 cut(s) 361, 517
ClaI ATCGAT 2 cut(s) 303, 381
CseI GACGC 3 cut(s) 109, 406, 590
Csp6I GTAC 3 cut(s) 297, 435, 552
CviAII CATG 3 cut(s) 200, 674, 753
CviQI GTAC 3 cut(s) 297, 435, 552
DdeI CTNAG 2 cut(s) 246, 391
DraI TTTAAA 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 634
Eco47I GGWCC 2 cut(s) 361, 517
Eco57I CTGAAG 2 cut(s) 386, 728
Eco91I GGTNACC 1 cut(s) 568
EcoNI CCTNNNNNAGG 1 cut(s) 710
EcoO65I GGTNACC 1 cut(s) 568
EcoRII CCWGG 5 cut(s) 316, 411, 541, 606, 652
EcoT38I GRGCYC 1 cut(s) 634
Esp3I CGTCTC 1 cut(s) 424
FaeI CATG 3 cut(s) 203, 677, 756
FatI CATG 3 cut(s) 199, 673, 752
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 6 cut(s) 118, 329, 332, 768, 784, 791
FokI GGATG 3 cut(s) 608, 671, 677
FriOI GRGCYC 1 cut(s) 634
Fsp4HI GCNGC 6 cut(s) 118, 329, 332, 768, 784, 791
FspBI CTAG 1 cut(s) 794
GluI GCNGC 6 cut(s) 118, 329, 332, 768, 784, 791
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 1 cut(s) 705
HapII CCGG 5 cut(s) 48, 348, 477, 520, 585
HgaI GACGC 3 cut(s) 109, 406, 590
Hin1I GRCGYC 3 cut(s) 120, 417, 582
Hin1II CATG 3 cut(s) 203, 677, 756
HindIII AAGCTT 1 cut(s) 388
HinfI GANTC 1 cut(s) 91
HpaII CCGG 5 cut(s) 48, 348, 477, 520, 585
HphI GGTGA 4 cut(s) 515, 590, 656, 710
Hpy188I TCNGA 5 cut(s) 67, 273, 280, 365, 424
Hpy188III TCNNGA 2 cut(s) 509, 520
Hpy99I CGWCG 3 cut(s) 565, 617, 748
HpyAV CCTTC 3 cut(s) 16, 257, 703
HpyCH4III ACNGT 5 cut(s) 260, 284, 556, 578, 617
HpyCH4V TGCA 5 cut(s) 98, 194, 331, 468, 756
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 638, 687
HpyF3I CTNAG 2 cut(s) 246, 391
Hsp92I GRCGYC 3 cut(s) 120, 417, 582
Hsp92II CATG 3 cut(s) 203, 677, 756
Kpn2I TCCGGA 1 cut(s) 519
KroI GCCGGC 1 cut(s) 584
KroNI GCCGGC 1 cut(s) 586
Ksp22I TGATCA 1 cut(s) 505
LmnI GCTCC 1 cut(s) 780
Lsp1109I GCAGC 4 cut(s) 315, 343, 777, 795
LweI GCATC 2 cut(s) 343, 655
MaeI CTAG 1 cut(s) 794
MaeIII GTNAC 3 cut(s) 152, 568, 578
MboII GAAGA 1 cut(s) 392
MflI RGATCY 4 cut(s) 158, 233, 397, 446
MhlI GDGCHC 1 cut(s) 634
MluCI AATT 2 cut(s) 43, 126
MmeI TCCRAC 3 cut(s) 303, 334, 388
MnlI CCTC 5 cut(s) 241, 388, 494, 593, 706
MroI TCCGGA 1 cut(s) 519
MroNI GCCGGC 1 cut(s) 584
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 786
MspI CCGG 5 cut(s) 48, 348, 477, 520, 585
MspR9I CCNGG 5 cut(s) 318, 413, 543, 608, 654
Mva1269I GAATGC 1 cut(s) 119
MvaI CCWGG 5 cut(s) 318, 413, 543, 608, 654
MwoI GCNNNNNNNGC 3 cut(s) 185, 638, 687
NaeI GCCGGC 1 cut(s) 586
NgoMIV GCCGGC 1 cut(s) 584
NlaIII CATG 3 cut(s) 203, 677, 756
NlaIV GGNNCC 3 cut(s) 475, 518, 531
NmuCI GTSAC 2 cut(s) 152, 578
NspI RCATGY 1 cut(s) 756
PcsI WCGNNNNNNNCGW 1 cut(s) 746
PctI GAATGC 1 cut(s) 119
PdiI GCCGGC 1 cut(s) 586
PfeI GAWTC 1 cut(s) 91
PflFI GACNNNGTC 1 cut(s) 515
PfoI TCCNGGA 1 cut(s) 541
PkrI GCNGC 6 cut(s) 119, 330, 333, 769, 785, 792
Ple19I CGATCG 1 cut(s) 427
Psp6I CCWGG 5 cut(s) 316, 411, 541, 606, 652
PspEI GGTNACC 1 cut(s) 568
PspGI CCWGG 5 cut(s) 316, 411, 541, 606, 652
PspN4I GGNNCC 3 cut(s) 475, 518, 531
PspPI GGNCC 2 cut(s) 361, 517
PstI CTGCAG 1 cut(s) 333
PsuI RGATCY 4 cut(s) 158, 233, 397, 446
PsyI GACNNNGTC 1 cut(s) 515
PvuI CGATCG 1 cut(s) 427
PvuII CAGCTG 1 cut(s) 786
RsaI GTAC 3 cut(s) 298, 436, 553
RsaNI GTAC 3 cut(s) 297, 435, 552
RseI CAYNNNNRTG 1 cut(s) 339
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 6 cut(s) 118, 329, 332, 768, 784, 791
Sau96I GGNCC 2 cut(s) 361, 517
ScrFI CCNGG 5 cut(s) 318, 413, 543, 608, 654
SduI GDGCHC 1 cut(s) 634
SfaNI GCATC 2 cut(s) 343, 655
SfcI CTRYAG 2 cut(s) 162, 329
SinI GGWCC 2 cut(s) 361, 517
SmiMI CAYNNNNRTG 1 cut(s) 339
Sse9I AATT 2 cut(s) 43, 126
SsiI CCGC 3 cut(s) 117, 566, 767
SspMI CTAG 1 cut(s) 794
StyD4I CCNGG 5 cut(s) 316, 411, 541, 606, 652
TaaI ACNGT 5 cut(s) 260, 284, 556, 578, 617
TaqI TCGA 5 cut(s) 303, 337, 381, 499, 537
TasI AATT 2 cut(s) 43, 126
TatI WGTACW 1 cut(s) 296
TauI GCSGC 2 cut(s) 120, 770
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TseFI GTSAC 2 cut(s) 152, 578
TseI GCWGC 4 cut(s) 328, 331, 783, 790
Tsp45I GTSAC 2 cut(s) 152, 578
TspDTI ATGAA 2 cut(s) 188, 503
Tth111I GACNNNGTC 1 cut(s) 515
VpaK11BI GGWCC 2 cut(s) 361, 517
XagI CCTNNNNNAGG 1 cut(s) 710
XapI RAATTY 1 cut(s) 43
XceI RCATGY 1 cut(s) 756
XspI CTAG 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.