Rh1DG053200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001047
Physical Location & Seq
Forward (+)
8534902 .. 8547811
12910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG053200.1

Sequence Viewer

Length: 714 bp
ATGGTCATGGCTACTGCTCATCTGATAGCTAATCGTTTCTTTCTTGGTTTTGCTTTTGCTTTCTTGCTCGGAGCACCGCCTTGGTATGGGCTCCCTGTGGTTACTGTTTGGGAAGGTAGTGTTGCTGGTTGGATGGCTGATCGGAGGCCGAACTCTAACGGCGTGGTTCTGGTTTGGCCTAAGGTGGATGGGCGCGTCTGGGTTTTGGATCGGGGTCGTCTACCTTCCGACGGTGATAGGGATTGGACAATCGATTTGGTTGGCCCTGGTGGTTCGCTGCAGCGTCGTGGTGTTGCCGGAGTGGGGTTGGCCAGACCAGTTCAGGGGATCGATCAAAGCTTGGAGGATCTTCAGGTTGATAGTGATGATGGATCTGCTCTTGATTCGTCGGTTGATGGTGGTGGTAGCGACCGACGCGGTGGCCAGATTGCTTCTGTTGGCGGTGGTAAGGATTGGTGGCGGGGTTGTGTGCCTCCGAATGACGAACCTAGGCGAGCTGATCGTTTCGTTTTCTGTTCCATCTTCTCGTTGTATTTAGACGATGGTGGTGGAGCAGGGGGTTGTCTCTGGTTCATGACGGCGGAGTATCTAGTCTTCGATGGTGGAGGTGGTACTTTGTTTGGTGGTGGCGACGGTTTCTGGGTGGAATTTGATCCCCTTGGGGTTGTGACCCACGGCGGTGGCGGCGACAGCTTGCACGGCTGTGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

25.01

Weight (kDa)

4.49

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 220
AccII CGCG 2 cut(s) 195, 417
AciI CCGC 7 cut(s) 77, 417, 441, 460, 581, 678, 684
AclWI GGATC 5 cut(s) 216, 335, 354, 379, 647
AcoI YGGCCR 2 cut(s) 309, 421
AcsI RAATTY 1 cut(s) 647
AcuI CTGAAG 1 cut(s) 335
AfaI GTAC 1 cut(s) 613
AfiI CCNNNNNNNGG 4 cut(s) 86, 230, 303, 323
AjnI CCWGG 1 cut(s) 265
AleI CACNNNNGTG 2 cut(s) 678, 702
AluBI AGCT 4 cut(s) 29, 339, 497, 693
AluI AGCT 4 cut(s) 29, 339, 497, 693
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 1 cut(s) 569
AlwI GGATC 5 cut(s) 216, 335, 354, 379, 647
AoxI GGCC 5 cut(s) 146, 176, 262, 309, 421
ApeKI GCWGC 2 cut(s) 277, 280
ApoI RAATTY 1 cut(s) 647
ArsI GACNNNNNNTTYG 2 cut(s) 238, 270
AspA2I CCTAGG 1 cut(s) 488
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 245
AvrII CCTAGG 1 cut(s) 488
AxyI CCTNAGG 1 cut(s) 180
BalI TGGCCA 2 cut(s) 311, 423
BanII GRGCYC 1 cut(s) 93
BarI GAAGNNNNNNTAC 2 cut(s) 578, 610
BbsI GAAGAC 1 cut(s) 586
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 2 cut(s) 264, 292
BccI CCATC 8 cut(s) 127, 182, 362, 389, 527, 536, 593, 701
BceAI ACGGC 3 cut(s) 175, 594, 691
BciT130I CCWGG 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 569
BfaI CTAG 2 cut(s) 489, 590
BfmI CTRYAG 1 cut(s) 278
BisI GCNGC 3 cut(s) 278, 281, 685
BlnI CCTAGG 1 cut(s) 488
BlsI GCNGC 3 cut(s) 279, 282, 686
Bme1390I CCNGG 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 586
Bsa29I ATCGAT 2 cut(s) 252, 330
BsaJI CCNNGG 5 cut(s) 80, 265, 488, 658, 673
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 230, 303, 323
Bse1I ACTGG 1 cut(s) 317
Bse21I CCTNAGG 1 cut(s) 180
BseBI CCWGG 1 cut(s) 267
BseCI ATCGAT 2 cut(s) 252, 330
BseDI CCNNGG 5 cut(s) 80, 265, 488, 658, 673
BseGI GGATG 2 cut(s) 138, 193
BseLI CCNNNNNNNGG 4 cut(s) 86, 230, 303, 323
BseNI ACTGG 1 cut(s) 317
BseXI GCAGC 2 cut(s) 264, 292
Bsh1236I CGCG 2 cut(s) 195, 417
Bsh1285I CGRYCG 1 cut(s) 412
BshFI GGCC 5 cut(s) 148, 178, 264, 311, 423
BshVI ATCGAT 2 cut(s) 252, 330
BsiEI CGRYCG 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 76
BsiSI CCGG 1 cut(s) 297
BslI CCNNNNNNNGG 4 cut(s) 86, 230, 303, 323
BsmAI GTCTC 1 cut(s) 569
BsnI GGCC 5 cut(s) 148, 178, 264, 311, 423
Bsp1286I GDGCHC 2 cut(s) 76, 93
Bsp143I GATC 8 cut(s) 139, 208, 327, 331, 346, 371, 499, 652
BspACI CCGC 7 cut(s) 77, 417, 441, 460, 581, 678, 684
BspANI GGCC 5 cut(s) 148, 178, 264, 311, 423
BspDI ATCGAT 2 cut(s) 252, 330
BspFNI CGCG 2 cut(s) 195, 417
BspHI TCATGA 1 cut(s) 573
BspLI GGNNCC 1 cut(s) 92
BspMAI CTGCAG 1 cut(s) 282
BspPI GGATC 5 cut(s) 216, 335, 354, 379, 647
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 5 cut(s) 80, 265, 488, 658, 673
BssMI GATC 8 cut(s) 139, 208, 327, 331, 346, 371, 499, 652
BssT1I CCWWGG 3 cut(s) 80, 488, 658
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 3 cut(s) 106, 233, 635
BstC8I GCNNGC 2 cut(s) 495, 695
BstDEI CTNAG 1 cut(s) 180
BstDSI CCRYGG 1 cut(s) 673
BstF5I GGATG 2 cut(s) 138, 193
BstFNI CGCG 2 cut(s) 195, 417
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 8 cut(s) 142, 211, 330, 334, 349, 374, 502, 655
BstMAI GTCTC 1 cut(s) 569
BstMBI GATC 8 cut(s) 139, 208, 327, 331, 346, 371, 499, 652
BstMCI CGRYCG 1 cut(s) 412
BstMWI GCNNNNNNNGC 4 cut(s) 414, 684, 690, 699
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BstSFI CTRYAG 1 cut(s) 278
BstUI CGCG 2 cut(s) 195, 417
BstV1I GCAGC 2 cut(s) 264, 292
BstV2I GAAGAC 1 cut(s) 586
BstX2I RGATCY 2 cut(s) 346, 371
BstXI CCANNNNNNTGG 1 cut(s) 680
BstYI RGATCY 2 cut(s) 346, 371
Bsu15I ATCGAT 2 cut(s) 252, 330
Bsu36I CCTNAGG 1 cut(s) 180
BsuRI GGCC 5 cut(s) 148, 178, 264, 311, 423
BsuTUI ATCGAT 2 cut(s) 252, 330
BtgI CCRYGG 1 cut(s) 673
BtsCI GGATG 2 cut(s) 138, 193
Cac8I GCNNGC 2 cut(s) 495, 695
CciI TCATGA 1 cut(s) 573
CfoI GCGC 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 263
ClaI ATCGAT 2 cut(s) 252, 330
CseI GACGC 3 cut(s) 184, 272, 423
Csp6I GTAC 1 cut(s) 612
CviAII CATG 2 cut(s) 7, 574
CviQI GTAC 1 cut(s) 612
DdeI CTNAG 1 cut(s) 180
DpnI GATC 8 cut(s) 141, 210, 329, 333, 348, 373, 501, 654
DpnII GATC 8 cut(s) 139, 208, 327, 331, 346, 371, 499, 652
EaeI YGGCCR 2 cut(s) 309, 421
EciI GGCGGA 1 cut(s) 596
Eco130I CCWWGG 3 cut(s) 80, 488, 658
Eco24I GRGCYC 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 335
Eco81I CCTNAGG 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 265
EcoT14I CCWWGG 3 cut(s) 80, 488, 658
EcoT38I GRGCYC 1 cut(s) 93
ErhI CCWWGG 3 cut(s) 80, 488, 658
FaeI CATG 2 cut(s) 10, 577
FaiI YATR 3 cut(s) 8, 87, 575
FatI CATG 2 cut(s) 6, 573
FauI CCCGC 1 cut(s) 453
FblI GTMKAC 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 278, 281, 685
FokI GGATG 2 cut(s) 145, 200
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 3 cut(s) 278, 281, 685
FspBI CTAG 2 cut(s) 489, 590
GlaI GCGC 1 cut(s) 194
GluI GCNGC 3 cut(s) 278, 281, 685
HaeIII GGCC 5 cut(s) 148, 178, 264, 311, 423
HapII CCGG 1 cut(s) 297
HgaI GACGC 3 cut(s) 184, 272, 423
HhaI GCGC 1 cut(s) 195
Hin1II CATG 2 cut(s) 10, 577
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 337
HinfI GANTC 1 cut(s) 383
HpaII CCGG 1 cut(s) 297
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 5 cut(s) 24, 71, 144, 229, 477
Hpy188III TCNNGA 2 cut(s) 380, 574
Hpy8I GTNNAC 1 cut(s) 221
Hpy99I CGWCG 5 cut(s) 233, 288, 391, 417, 635
HpyAV CCTTC 2 cut(s) 107, 234
HpyCH4III ACNGT 3 cut(s) 106, 233, 635
HpyCH4V TGCA 2 cut(s) 280, 697
HpyF10VI GCNNNNNNNGC 4 cut(s) 414, 684, 690, 699
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 2 cut(s) 10, 577
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 8 cut(s) 139, 208, 327, 331, 346, 371, 499, 652
LmnI GCTCC 3 cut(s) 71, 96, 551
Lsp1109I GCAGC 2 cut(s) 264, 292
MaeI CTAG 2 cut(s) 489, 590
MaeIII GTNAC 2 cut(s) 100, 667
MalI GATC 8 cut(s) 141, 210, 329, 333, 348, 373, 501, 654
MboI GATC 8 cut(s) 139, 208, 327, 331, 346, 371, 499, 652
MboII GAAGA 3 cut(s) 341, 514, 586
MflI RGATCY 2 cut(s) 346, 371
MhlI GDGCHC 2 cut(s) 76, 93
MlsI TGGCCA 2 cut(s) 311, 423
MluCI AATT 1 cut(s) 647
MluNI TGGCCA 2 cut(s) 311, 423
MmeI TCCRAC 2 cut(s) 110, 252
MnlI CCTC 4 cut(s) 138, 337, 483, 599
Mox20I TGGCCA 2 cut(s) 311, 423
MscI TGGCCA 2 cut(s) 311, 423
MslI CAYNNNNRTG 2 cut(s) 678, 702
Msp20I TGGCCA 2 cut(s) 311, 423
MspI CCGG 1 cut(s) 297
MspR9I CCNGG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 267
MvnI CGCG 2 cut(s) 195, 417
MwoI GCNNNNNNNGC 4 cut(s) 414, 684, 690, 699
NdeII GATC 8 cut(s) 139, 208, 327, 331, 346, 371, 499, 652
NlaIII CATG 2 cut(s) 10, 577
NlaIV GGNNCC 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 667
OliI CACNNNNGTG 2 cut(s) 678, 702
PagI TCATGA 1 cut(s) 573
PfeI GAWTC 1 cut(s) 383
PkrI GCNGC 3 cut(s) 279, 282, 686
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 1 cut(s) 263
PstI CTGCAG 1 cut(s) 282
PsuI RGATCY 2 cut(s) 346, 371
RsaI GTAC 1 cut(s) 613
RsaNI GTAC 1 cut(s) 612
RseI CAYNNNNRTG 2 cut(s) 678, 702
SatI GCNGC 3 cut(s) 278, 281, 685
Sau3AI GATC 8 cut(s) 139, 208, 327, 331, 346, 371, 499, 652
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 267
SduI GDGCHC 2 cut(s) 76, 93
SfcI CTRYAG 1 cut(s) 278
SmiMI CAYNNNNRTG 2 cut(s) 678, 702
Sse9I AATT 1 cut(s) 647
SsiI CCGC 7 cut(s) 77, 417, 441, 460, 581, 678, 684
SspMI CTAG 2 cut(s) 489, 590
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 3 cut(s) 80, 488, 658
TaaI ACNGT 3 cut(s) 106, 233, 635
TaqI TCGA 3 cut(s) 252, 330, 597
TaqII GACCGA 1 cut(s) 426
TasI AATT 1 cut(s) 647
TauI GCSGC 1 cut(s) 687
TfiI GAWTC 1 cut(s) 383
TseFI GTSAC 1 cut(s) 667
TseI GCWGC 2 cut(s) 277, 280
Tsp45I GTSAC 1 cut(s) 667
TspDTI ATGAA 1 cut(s) 562
XapI RAATTY 1 cut(s) 647
XmaJI CCTAGG 1 cut(s) 488
XmiI GTMKAC 1 cut(s) 220
XspI CTAG 2 cut(s) 489, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.