Rh6BG073500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001047
Physical Location & Seq
Forward (+)
11124105 .. 11125297
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG073500.1

Sequence Viewer

Length: 615 bp
ATGGCTACTGCTCATCTGGTAGCTAATCGTTTCTTTTTTGGTTTTGCTTTTACTTTCTTGCTCGGAGCGCCGCCTTGGTATGGGCTCCCTGTGGTTACTGTTGGGGAGGGTAGTGTTGCTGTTTGGATGGCTGATCGGAGGCCGAACTCTAACGGCGTGGTTCTGGTTTGGCCTAAGGTGGATGGGTGCGTCTGGGTTTTGGATCGGGGTCGTCTGCCTTCCGACGGTGATAGGGATTGTACAATCGCTTTGGTAGGCCCTGGTGGTTCGCTGCAGCGTCGTGGTGTTGACGGAGTGGGGTTGGCCGGACCAGTTCAGGGGATTGATCAAAGCTTGGACGATTTTCAGGTTGATAGTGATGATGGATCTGCTCTTGATTCGTCGATTGATGGTGGTGGTAGCGACCGACGCGGAGGCCAGATTGCTTTTGTTGGCGGTGGGGGTTGTCTCTGGTTCATGAAGGCGGAGTATCTGGCCTTCGATGGTGGAGGTGGTACTTTGTCTGGAGGCGGTGATGGTTTCTGGGTGGAATCTGATCCCCTTGGGGTTGTGACCCACGGCGGTGGCGGCGACAGCTTGCACGGCTGTGATGGAGTGCATGCGATAAGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

21.01

Weight (kDa)

4.58

Isoelectric Point (pI)

38.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 411
AciI CCGC 7 cut(s) 71, 411, 435, 464, 510, 561, 567
AclWI GGATC 3 cut(s) 210, 373, 530
AcoI YGGCCR 1 cut(s) 303
AfaI GTAC 2 cut(s) 241, 496
AfiI CCNNNNNNNGG 3 cut(s) 80, 224, 317
AjnI CCWGG 1 cut(s) 259
AleI CACNNNNGTG 2 cut(s) 561, 585
AluBI AGCT 3 cut(s) 23, 333, 576
AluI AGCT 3 cut(s) 23, 333, 576
Alw26I GTCTC 1 cut(s) 452
AlwI GGATC 3 cut(s) 210, 373, 530
AoxI GGCC 6 cut(s) 140, 170, 256, 303, 415, 474
ApeKI GCWGC 2 cut(s) 271, 274
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 2 cut(s) 257, 308
AsuHPI GGTGA 2 cut(s) 239, 524
AvaII GGWCC 1 cut(s) 308
AxyI CCTNAGG 1 cut(s) 174
BanII GRGCYC 1 cut(s) 87
BarI GAAGNNNNNNTAC 2 cut(s) 461, 493
BbvI GCAGC 2 cut(s) 258, 286
BccI CCATC 7 cut(s) 121, 176, 356, 383, 476, 509, 584
BceAI ACGGC 3 cut(s) 169, 574, 598
BciT130I CCWGG 1 cut(s) 261
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 1 cut(s) 452
BfmI CTRYAG 1 cut(s) 272
BfoI RGCGCY 1 cut(s) 71
BisI GCNGC 4 cut(s) 71, 272, 275, 568
BlsI GCNGC 4 cut(s) 72, 273, 276, 569
Bme1390I CCNGG 1 cut(s) 261
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 257, 308
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 525
BsaJI CCNNGG 4 cut(s) 74, 259, 541, 556
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 224, 317
Bse1I ACTGG 1 cut(s) 311
Bse21I CCTNAGG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 261
BseDI CCNNGG 4 cut(s) 74, 259, 541, 556
BseGI GGATG 2 cut(s) 132, 187
BseLI CCNNNNNNNGG 3 cut(s) 80, 224, 317
BseNI ACTGG 1 cut(s) 311
BseXI GCAGC 2 cut(s) 258, 286
Bsh1236I CGCG 1 cut(s) 411
Bsh1285I CGRYCG 1 cut(s) 406
BshFI GGCC 6 cut(s) 142, 172, 258, 305, 417, 476
BsiEI CGRYCG 1 cut(s) 406
BsiSI CCGG 1 cut(s) 306
BslI CCNNNNNNNGG 3 cut(s) 80, 224, 317
BsmAI GTCTC 1 cut(s) 452
BsnI GGCC 6 cut(s) 142, 172, 258, 305, 417, 476
Bsp1286I GDGCHC 1 cut(s) 87
Bsp1407I TGTACA 1 cut(s) 239
Bsp143I GATC 5 cut(s) 133, 202, 325, 365, 535
BspACI CCGC 7 cut(s) 71, 411, 435, 464, 510, 561, 567
BspANI GGCC 6 cut(s) 142, 172, 258, 305, 417, 476
BspFNI CGCG 1 cut(s) 411
BspHI TCATGA 1 cut(s) 456
BspLI GGNNCC 1 cut(s) 86
BspMAI CTGCAG 1 cut(s) 276
BspPI GGATC 3 cut(s) 210, 373, 530
BsrGI TGTACA 1 cut(s) 239
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 4 cut(s) 74, 259, 541, 556
BssMI GATC 5 cut(s) 133, 202, 325, 365, 535
BssT1I CCWWGG 2 cut(s) 74, 541
Bst2UI CCWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 100, 227
BstAUI TGTACA 1 cut(s) 239
BstC8I GCNNGC 2 cut(s) 578, 600
BstDEI CTNAG 1 cut(s) 174
BstDSI CCRYGG 1 cut(s) 556
BstF5I GGATG 2 cut(s) 132, 187
BstFNI CGCG 1 cut(s) 411
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 5 cut(s) 136, 205, 328, 368, 538
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 5 cut(s) 133, 202, 325, 365, 535
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 5 cut(s) 67, 408, 567, 573, 582
BstNI CCWGG 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 602
BstSCI CCNGG 1 cut(s) 259
BstSFI CTRYAG 1 cut(s) 272
BstUI CGCG 1 cut(s) 411
BstV1I GCAGC 2 cut(s) 258, 286
BstX2I RGATCY 1 cut(s) 365
BstXI CCANNNNNNTGG 1 cut(s) 563
BstYI RGATCY 1 cut(s) 365
Bsu36I CCTNAGG 1 cut(s) 174
BsuRI GGCC 6 cut(s) 142, 172, 258, 305, 417, 476
BtgI CCRYGG 1 cut(s) 556
BtsCI GGATG 2 cut(s) 132, 187
Cac8I GCNNGC 2 cut(s) 578, 600
CciI TCATGA 1 cut(s) 456
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 257, 308
CseI GACGC 3 cut(s) 178, 266, 417
Csp6I GTAC 2 cut(s) 240, 495
CviAII CATG 2 cut(s) 457, 599
CviQI GTAC 2 cut(s) 240, 495
DdeI CTNAG 1 cut(s) 174
DpnI GATC 5 cut(s) 135, 204, 327, 367, 537
DpnII GATC 5 cut(s) 133, 202, 325, 365, 535
EaeI YGGCCR 1 cut(s) 303
EciI GGCGGA 1 cut(s) 479
Eco130I CCWWGG 2 cut(s) 74, 541
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 308
Eco81I CCTNAGG 1 cut(s) 174
EcoO109I RGGNCCY 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 259
EcoT14I CCWWGG 2 cut(s) 74, 541
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 2 cut(s) 74, 541
FaeI CATG 2 cut(s) 460, 602
FaiI YATR 3 cut(s) 81, 458, 600
FatI CATG 2 cut(s) 456, 598
FbaI TGATCA 1 cut(s) 325
Fnu4HI GCNGC 4 cut(s) 71, 272, 275, 568
FokI GGATG 2 cut(s) 139, 194
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 4 cut(s) 71, 272, 275, 568
GlaI GCGC 1 cut(s) 69
GluI GCNGC 4 cut(s) 71, 272, 275, 568
GsuI CTGGAG 1 cut(s) 525
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 6 cut(s) 142, 172, 258, 305, 417, 476
HapII CCGG 1 cut(s) 306
HgaI GACGC 3 cut(s) 178, 266, 417
HhaI GCGC 1 cut(s) 70
Hin1II CATG 2 cut(s) 460, 602
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HindIII AAGCTT 1 cut(s) 331
HinfI GANTC 2 cut(s) 377, 530
HpaII CCGG 1 cut(s) 306
HphI GGTGA 2 cut(s) 239, 524
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 4 cut(s) 65, 138, 223, 535
Hpy188III TCNNGA 3 cut(s) 374, 457, 504
Hpy8I GTNNAC 1 cut(s) 289
Hpy99I CGWCG 4 cut(s) 227, 282, 385, 411
HpyAV CCTTC 3 cut(s) 228, 454, 487
HpyCH4III ACNGT 2 cut(s) 100, 227
HpyCH4V TGCA 3 cut(s) 274, 580, 598
HpyF10VI GCNNNNNNNGC 5 cut(s) 67, 408, 567, 573, 582
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 2 cut(s) 460, 602
HspAI GCGC 1 cut(s) 68
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 5 cut(s) 133, 202, 325, 365, 535
LmnI GCTCC 2 cut(s) 65, 90
Lsp1109I GCAGC 2 cut(s) 258, 286
MaeIII GTNAC 2 cut(s) 94, 550
MalI GATC 5 cut(s) 135, 204, 327, 367, 537
MboI GATC 5 cut(s) 133, 202, 325, 365, 535
MflI RGATCY 1 cut(s) 365
MhlI GDGCHC 1 cut(s) 87
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 5 cut(s) 100, 132, 407, 482, 500
MslI CAYNNNNRTG 2 cut(s) 561, 585
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 261
MvnI CGCG 1 cut(s) 411
MwoI GCNNNNNNNGC 5 cut(s) 67, 408, 567, 573, 582
NdeII GATC 5 cut(s) 133, 202, 325, 365, 535
NlaIII CATG 2 cut(s) 460, 602
NlaIV GGNNCC 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 550
NspI RCATGY 1 cut(s) 602
OliI CACNNNNGTG 2 cut(s) 561, 585
PaeI GCATGC 1 cut(s) 602
PagI TCATGA 1 cut(s) 456
PfeI GAWTC 2 cut(s) 377, 530
PkrI GCNGC 4 cut(s) 72, 273, 276, 569
Psp6I CCWGG 1 cut(s) 259
PspGI CCWGG 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 2 cut(s) 257, 308
PstI CTGCAG 1 cut(s) 276
PsuI RGATCY 1 cut(s) 365
RsaI GTAC 2 cut(s) 241, 496
RsaNI GTAC 2 cut(s) 240, 495
RseI CAYNNNNRTG 2 cut(s) 561, 585
SatI GCNGC 4 cut(s) 71, 272, 275, 568
Sau3AI GATC 5 cut(s) 133, 202, 325, 365, 535
Sau96I GGNCC 2 cut(s) 257, 308
ScrFI CCNGG 1 cut(s) 261
SduI GDGCHC 1 cut(s) 87
SetI ASST 6 cut(s) 25, 180, 335, 351, 493, 578
SfcI CTRYAG 1 cut(s) 272
SinI GGWCC 1 cut(s) 308
SmiMI CAYNNNNRTG 2 cut(s) 561, 585
SphI GCATGC 1 cut(s) 602
SsiI CCGC 7 cut(s) 71, 411, 435, 464, 510, 561, 567
StyD4I CCNGG 1 cut(s) 259
StyI CCWWGG 2 cut(s) 74, 541
TaaI ACNGT 2 cut(s) 100, 227
TaqI TCGA 2 cut(s) 383, 480
TaqII GACCGA 1 cut(s) 420
TatI WGTACW 1 cut(s) 239
TauI GCSGC 2 cut(s) 73, 570
TfiI GAWTC 2 cut(s) 377, 530
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 2 cut(s) 271, 274
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 2 cut(s) 445, 473
TspGWI ACGGA 1 cut(s) 306
VpaK11BI GGWCC 1 cut(s) 308
XceI RCATGY 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.