Rh6AG006600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001047
Physical Location & Seq
Forward (+)
882461 .. 883719
1259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG006600.1

Sequence Viewer

Length: 798 bp
ATGGCTATTGCTCGTCTGGTAGCTATTTCTTTCCTTCTTGTTTTTGCTTTTGTTTTCTTGCTCGGAGCGCCGCCTTGGTGTCGGTTCCCTGTGGTTACTGATTGGGAGGGTAGTGTTGTTGTTTGGATGATTGATCGGAGGCCGAGCTCTAACGGTGTGGATCTGGTTTGGACTGAGTTGGATGGGCGAGTCTGGGTTTTGGATCGGGGTCGTCAGATTTCCAACGGTGATAGGGCTTGTACAATCGCTTTGGTTGGCCCTGGTGGTTCGCTACAGCGTCATGGTGTTGCCGGAGTGGGGTTGGCCCGACCAGTTCAGGGGATCGATCAAAGCTTAGAGGATCTTCAGGTTGTCCTGGGAGCCTCCGATCGGGTTTATCCCGATCTAGGATCTGGTTTCTTCAATGATTGCGAAGGCACTGGAATGGATCTGAAGTTGGTTCGAGGTGATCAGGAATGGGCGCGAACTTGGGTGTCCTTCGATCCTGGAGATGGTACATTATCGTCGGCGGTGAACCACGGTGACGGCGGCTATGGGGATGGCGGTTTTCAGGGCGATGGAGCTCCTCCTTGGGATCTATGGGCTGGTGATCGTTCTGGGGATGGGGTTGCTCAATGTGGTGGCTTTTTTGGCTATGCTGGCGATGGTCTGAAGGTGGTCAGTAGGGGAGGCGGCGACGGTGACGGCGACATGCAACTTGGGAGCGGCCATGTTGTGGAGCAGCTGACTCTCTCAAGCGTTGTGGAGTGGAGTGACTGGCCAGTAATTGAACAATATCAAGACTTGCCATCTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

28.21

Weight (kDa)

4.27

Isoelectric Point (pI)

31.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 715
AccBSI CCGCTC 1 cut(s) 705
AccII CGCG 1 cut(s) 463
AciI CCGC 6 cut(s) 71, 509, 528, 543, 672, 705
AclWI GGATC 8 cut(s) 168, 210, 329, 348, 397, 435, 476, 582
AcoI YGGCCR 2 cut(s) 706, 758
AcuI CTGAAG 3 cut(s) 329, 452, 671
AfaI GTAC 2 cut(s) 241, 496
AfiI CCNNNNNNNGG 6 cut(s) 297, 317, 369, 386, 491, 715
AgsI TTSAA 2 cut(s) 403, 770
AjnI CCWGG 3 cut(s) 259, 354, 484
AluBI AGCT 5 cut(s) 23, 147, 333, 563, 724
AluI AGCT 5 cut(s) 23, 147, 333, 563, 724
Alw21I GWGCWC 2 cut(s) 149, 565
AlwI GGATC 8 cut(s) 168, 210, 329, 348, 397, 435, 476, 582
AoxI GGCC 5 cut(s) 140, 256, 303, 706, 758
ApeKI GCWGC 1 cut(s) 721
AspLEI GCGC 2 cut(s) 70, 463
AspS9I GGNCC 2 cut(s) 257, 304
AsuHPI GGTGA 6 cut(s) 239, 458, 523, 533, 599, 692
BalI TGGCCA 1 cut(s) 760
BanII GRGCYC 2 cut(s) 149, 565
Bbv12I GWGCWC 2 cut(s) 149, 565
BbvI GCAGC 1 cut(s) 733
BccI CCATC 7 cut(s) 176, 485, 533, 551, 596, 638, 796
BceAI ACGGC 2 cut(s) 541, 700
BciT130I CCWGG 3 cut(s) 261, 356, 486
BclI TGATCA 1 cut(s) 448
BfaI CTAG 1 cut(s) 386
BfmI CTRYAG 1 cut(s) 272
BfoI RGCGCY 1 cut(s) 71
BisI GCNGC 5 cut(s) 71, 529, 673, 706, 722
BlsI GCNGC 5 cut(s) 72, 530, 674, 707, 723
Bme1390I CCNGG 3 cut(s) 261, 356, 486
BmgT120I GGNCC 2 cut(s) 257, 304
BmiI GGNNCC 2 cut(s) 86, 361
BmrFI CCNGG 3 cut(s) 261, 356, 486
BpmI CTGGAG 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 718
Bsa29I ATCGAT 1 cut(s) 324
BsaJI CCNNGG 5 cut(s) 74, 259, 355, 517, 569
Bsc4I CCNNNNNNNGG 6 cut(s) 297, 317, 369, 386, 491, 715
Bse1I ACTGG 4 cut(s) 311, 424, 761, 761
BseBI CCWGG 3 cut(s) 261, 356, 486
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 5 cut(s) 74, 259, 355, 517, 569
BseGI GGATG 4 cut(s) 132, 187, 544, 607
BseLI CCNNNNNNNGG 6 cut(s) 297, 317, 369, 386, 491, 715
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 4 cut(s) 311, 424, 761, 761
BseRI GAGGAG 1 cut(s) 555
BseXI GCAGC 1 cut(s) 733
Bsh1236I CGCG 1 cut(s) 463
Bsh1285I CGRYCG 1 cut(s) 370
BshFI GGCC 5 cut(s) 142, 258, 305, 708, 760
BshVI ATCGAT 1 cut(s) 324
BsiEI CGRYCG 1 cut(s) 370
BsiHKAI GWGCWC 2 cut(s) 149, 565
BsiSI CCGG 1 cut(s) 291
BslI CCNNNNNNNGG 6 cut(s) 297, 317, 369, 386, 491, 715
BsnI GGCC 5 cut(s) 142, 258, 305, 708, 760
Bsp1286I GDGCHC 2 cut(s) 149, 565
Bsp1407I TGTACA 1 cut(s) 239
BspACI CCGC 6 cut(s) 71, 509, 528, 543, 672, 705
BspANI GGCC 5 cut(s) 142, 258, 305, 708, 760
BspCNI CTCAG 1 cut(s) 166
BspDI ATCGAT 1 cut(s) 324
BspFNI CGCG 1 cut(s) 463
BspLI GGNNCC 2 cut(s) 86, 361
BspPI GGATC 8 cut(s) 168, 210, 329, 348, 397, 435, 476, 582
BsrBI CCGCTC 1 cut(s) 705
BsrGI TGTACA 1 cut(s) 239
BsrI ACTGG 4 cut(s) 311, 424, 761, 761
BssECI CCNNGG 5 cut(s) 74, 259, 355, 517, 569
BssT1I CCWWGG 2 cut(s) 74, 569
Bst2UI CCWGG 3 cut(s) 261, 356, 486
Bst4CI ACNGT 4 cut(s) 155, 227, 521, 680
BstAUI TGTACA 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 640
BstDEI CTNAG 2 cut(s) 174, 334
BstDSI CCRYGG 1 cut(s) 517
BstF5I GGATG 4 cut(s) 132, 187, 544, 607
BstFNI CGCG 1 cut(s) 463
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 2 cut(s) 70, 463
BstMCI CGRYCG 1 cut(s) 370
BstMWI GCNNNNNNNGC 3 cut(s) 67, 630, 639
BstNI CCWGG 3 cut(s) 261, 356, 486
BstNSI RCATGY 1 cut(s) 694
BstSCI CCNGG 3 cut(s) 259, 354, 484
BstSFI CTRYAG 1 cut(s) 272
BstUI CGCG 1 cut(s) 463
BstV1I GCAGC 1 cut(s) 733
BstX2I RGATCY 5 cut(s) 160, 340, 389, 427, 574
BstYI RGATCY 5 cut(s) 160, 340, 389, 427, 574
Bsu15I ATCGAT 1 cut(s) 324
BsuRI GGCC 5 cut(s) 142, 258, 305, 708, 760
BsuTUI ATCGAT 1 cut(s) 324
BtgI CCRYGG 1 cut(s) 517
BtgZI GCGATG 2 cut(s) 570, 657
BtsCI GGATG 4 cut(s) 132, 187, 544, 607
BtsIMutI CAGTG 1 cut(s) 417
Cac8I GCNNGC 1 cut(s) 640
CfoI GCGC 2 cut(s) 70, 463
Cfr13I GGNCC 2 cut(s) 257, 304
ClaI ATCGAT 1 cut(s) 324
CseI GACGC 1 cut(s) 266
Csp6I GTAC 2 cut(s) 240, 495
CspCI CAANNNNNGTGG 2 cut(s) 723, 758
CviAII CATG 3 cut(s) 281, 691, 710
CviQI GTAC 2 cut(s) 240, 495
DdeI CTNAG 2 cut(s) 174, 334
EaeI YGGCCR 2 cut(s) 706, 758
Ecl136II GAGCTC 2 cut(s) 147, 563
Eco130I CCWWGG 2 cut(s) 74, 569
Eco24I GRGCYC 2 cut(s) 149, 565
Eco53kI GAGCTC 2 cut(s) 147, 563
Eco57I CTGAAG 3 cut(s) 329, 452, 671
EcoICRI GAGCTC 2 cut(s) 147, 563
EcoRII CCWGG 3 cut(s) 259, 354, 484
EcoT14I CCWWGG 2 cut(s) 74, 569
EcoT38I GRGCYC 2 cut(s) 149, 565
ErhI CCWWGG 2 cut(s) 74, 569
FaeI CATG 3 cut(s) 284, 694, 713
FaiI YATR 7 cut(s) 282, 534, 580, 636, 692, 711, 794
FatI CATG 3 cut(s) 280, 690, 709
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 5 cut(s) 71, 529, 673, 706, 722
FokI GGATG 4 cut(s) 139, 194, 551, 614
FriOI GRGCYC 2 cut(s) 149, 565
Fsp4HI GCNGC 5 cut(s) 71, 529, 673, 706, 722
FspBI CTAG 1 cut(s) 386
GlaI GCGC 2 cut(s) 69, 462
GluI GCNGC 5 cut(s) 71, 529, 673, 706, 722
GsuI CTGGAG 1 cut(s) 507
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 5 cut(s) 142, 258, 305, 708, 760
HapII CCGG 1 cut(s) 291
HgaI GACGC 1 cut(s) 266
HhaI GCGC 2 cut(s) 70, 463
Hin1II CATG 3 cut(s) 284, 694, 713
Hin6I GCGC 2 cut(s) 68, 461
HinP1I GCGC 2 cut(s) 68, 461
HindIII AAGCTT 1 cut(s) 331
HinfI GANTC 2 cut(s) 189, 727
HpaII CCGG 1 cut(s) 291
HphI GGTGA 6 cut(s) 239, 458, 523, 533, 599, 692
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 6 cut(s) 65, 138, 216, 367, 432, 651
Hpy188III TCNNGA 3 cut(s) 380, 452, 779
Hpy8I GTNNAC 1 cut(s) 514
Hpy99I CGWCG 2 cut(s) 508, 680
HpyAV CCTTC 4 cut(s) 44, 407, 487, 646
HpyCH4III ACNGT 4 cut(s) 155, 227, 521, 680
HpyCH4V TGCA 1 cut(s) 694
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 630, 639
HpyF3I CTNAG 2 cut(s) 174, 334
Hsp92II CATG 3 cut(s) 284, 694, 713
HspAI GCGC 2 cut(s) 68, 461
Ksp22I TGATCA 1 cut(s) 448
LmnI GCTCC 6 cut(s) 65, 359, 560, 568, 702, 718
Lsp1109I GCAGC 1 cut(s) 733
MaeI CTAG 1 cut(s) 386
MaeIII GTNAC 4 cut(s) 94, 521, 680, 752
MbiI CCGCTC 1 cut(s) 705
MboII GAAGA 2 cut(s) 335, 391
MflI RGATCY 5 cut(s) 160, 340, 389, 427, 574
MhlI GDGCHC 2 cut(s) 149, 565
MlsI TGGCCA 1 cut(s) 760
MluCI AATT 1 cut(s) 765
MluNI TGGCCA 1 cut(s) 760
MlyI GAGTC 2 cut(s) 198, 721
MmeI TCCRAC 2 cut(s) 159, 246
MnlI CCTC 7 cut(s) 100, 132, 331, 373, 437, 576, 662
Mox20I TGGCCA 1 cut(s) 760
MscI TGGCCA 1 cut(s) 760
MslI CAYNNNNRTG 2 cut(s) 422, 793
Msp20I TGGCCA 1 cut(s) 760
MspA1I CMGCKG 1 cut(s) 724
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 3 cut(s) 261, 356, 486
MvaI CCWGG 3 cut(s) 261, 356, 486
MvnI CGCG 1 cut(s) 463
MwoI GCNNNNNNNGC 3 cut(s) 67, 630, 639
NlaIII CATG 3 cut(s) 284, 694, 713
NlaIV GGNNCC 2 cut(s) 86, 361
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 3 cut(s) 521, 680, 752
NspI RCATGY 1 cut(s) 694
PcsI WCGNNNNNNNCGW 1 cut(s) 684
PflMI CCANNNNNTGG 1 cut(s) 715
PfoI TCCNGGA 1 cut(s) 484
PkrI GCNGC 5 cut(s) 72, 530, 674, 707, 723
Ple19I CGATCG 1 cut(s) 370
PleI GAGTC 2 cut(s) 197, 721
PpsI GAGTC 2 cut(s) 197, 721
Psp124BI GAGCTC 2 cut(s) 149, 565
Psp6I CCWGG 3 cut(s) 259, 354, 484
PspGI CCWGG 3 cut(s) 259, 354, 484
PspN4I GGNNCC 2 cut(s) 86, 361
PspPI GGNCC 2 cut(s) 257, 304
PsuI RGATCY 5 cut(s) 160, 340, 389, 427, 574
PvuI CGATCG 1 cut(s) 370
PvuII CAGCTG 1 cut(s) 724
RsaI GTAC 2 cut(s) 241, 496
RsaNI GTAC 2 cut(s) 240, 495
RseI CAYNNNNRTG 2 cut(s) 422, 793
SacI GAGCTC 2 cut(s) 149, 565
SatI GCNGC 5 cut(s) 71, 529, 673, 706, 722
Sau96I GGNCC 2 cut(s) 257, 304
SchI GAGTC 2 cut(s) 198, 721
ScrFI CCNGG 3 cut(s) 261, 356, 486
SduI GDGCHC 2 cut(s) 149, 565
SetI ASST 8 cut(s) 25, 149, 335, 351, 448, 565, 657, 726
SfcI CTRYAG 1 cut(s) 272
SmiMI CAYNNNNRTG 2 cut(s) 422, 793
SmlI CTYRAG 1 cut(s) 733
SmoI CTYRAG 1 cut(s) 733
Sse9I AATT 1 cut(s) 765
SsiI CCGC 6 cut(s) 71, 509, 528, 543, 672, 705
SspMI CTAG 1 cut(s) 386
SstI GAGCTC 2 cut(s) 149, 565
StyD4I CCNGG 3 cut(s) 259, 354, 484
StyI CCWWGG 2 cut(s) 74, 569
TaaI ACNGT 4 cut(s) 155, 227, 521, 680
TaqI TCGA 3 cut(s) 324, 442, 480
TasI AATT 1 cut(s) 765
TatI WGTACW 1 cut(s) 239
TauI GCSGC 4 cut(s) 73, 531, 675, 708
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 3 cut(s) 521, 680, 752
TseI GCWGC 1 cut(s) 721
Tsp45I GTSAC 3 cut(s) 521, 680, 752
TspRI CASTG 1 cut(s) 424
Van91I CCANNNNNTGG 1 cut(s) 715
XceI RCATGY 1 cut(s) 694
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.